Wall clock time and date at job start Tue Mar 31 2020 05:26:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52993 * 109.47409 * 2 1 4 4 H 1.08999 * 109.47562 * 54.99525 * 3 2 1 5 5 C 1.50695 * 109.47509 * 174.99955 * 3 2 1 6 6 H 1.08001 * 120.00672 * 119.99458 * 5 3 2 7 7 C 1.37882 * 119.99838 * 300.00128 * 5 3 2 8 8 N 1.31519 * 119.99910 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 119.99892 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47058 * 90.00048 * 9 7 5 11 11 H 1.48504 * 109.47219 * 209.99529 * 9 7 5 12 12 H 1.48495 * 109.47370 * 329.99740 * 9 7 5 13 13 N 1.46506 * 109.47179 * 294.99884 * 3 2 1 14 14 C 1.34773 * 119.99926 * 84.99692 * 13 3 2 15 15 O 1.21698 * 120.00450 * 5.26737 * 14 13 3 16 16 C 1.46685 * 119.99798 * 185.26676 * 14 13 3 17 17 C 1.37864 * 126.23652 * 355.00092 * 16 14 13 18 18 C 1.39836 * 107.08979 * 180.02562 * 17 16 14 19 19 C 1.35458 * 107.85909 * 0.02562 * 18 17 16 20 20 N 1.48023 * 125.55720 * 179.73426 * 19 18 17 21 21 O 1.21800 * 120.00529 * 0.02847 * 20 19 18 22 22 O 1.21804 * 119.99533 * 180.02562 * 20 19 18 23 23 N 1.35526 * 108.87325 * 0.02562 * 19 18 17 24 24 C 1.46500 * 125.67585 * 179.97438 * 23 19 18 25 25 H 1.09000 * 109.47122 * 60.00084 * 1 2 3 26 26 H 1.08998 * 109.47171 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47280 * 300.00636 * 1 2 3 28 28 H 1.09002 * 109.47280 * 239.99364 * 2 1 3 29 29 H 1.08999 * 109.46637 * 119.99717 * 2 1 3 30 30 H 0.96996 * 120.00052 * 180.02562 * 8 7 5 31 31 H 0.96993 * 119.99838 * 265.00140 * 13 3 2 32 32 H 1.08003 * 126.45637 * 0.02944 * 17 16 14 33 33 H 1.07997 * 126.07160 * 180.02562 * 18 17 16 34 34 H 1.08999 * 109.47536 * 94.95434 * 24 23 19 35 35 H 1.08999 * 109.47170 * 214.95821 * 24 23 19 36 36 H 1.09001 * 109.47214 * 334.95379 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9816 0.8417 5 6 3.5419 1.4442 0.1238 6 1 4.1473 1.8887 -0.6523 7 6 4.1433 0.8783 1.2280 8 7 3.4061 0.3373 2.1734 9 14 6.0049 0.8799 1.3812 10 1 6.4427 2.1128 2.0837 11 1 6.4390 -0.3111 2.1547 12 1 6.6131 0.8393 0.0271 13 7 1.6526 2.0974 -1.2519 14 6 0.4353 2.6643 -1.3670 15 8 -0.3052 2.7171 -0.4027 16 6 0.0029 3.2178 -2.6548 17 6 0.7672 3.3145 -3.7981 18 6 -0.0363 3.9004 -4.7812 19 6 -1.2504 4.1466 -4.2331 20 7 -2.3993 4.7677 -4.9297 21 8 -2.2955 5.1035 -6.0959 22 8 -3.4487 4.9428 -4.3366 23 7 -1.2393 3.7372 -2.9412 24 6 -2.3626 3.8310 -2.0056 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.8291 -0.0605 2.9503 31 1 2.2720 2.1230 -1.9978 32 1 1.7932 2.9974 -3.9129 33 1 0.2587 4.1181 -5.7971 34 1 -2.9116 2.8894 -2.0012 35 1 -1.9850 4.0361 -1.0039 36 1 -3.0272 4.6376 -2.3154 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358052206.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:01 Heat of formation + Delta-G solvation = 7.601308 kcal Electronic energy + Delta-G solvation = -22121.529756 eV Core-core repulsion = 18610.244637 eV Total energy + Delta-G solvation = -3511.285119 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.66485 -41.39979 -38.91605 -36.80528 -35.37904 -33.51597 -32.52188 -31.43748 -30.38313 -27.51424 -26.96753 -26.01986 -23.40626 -22.46953 -21.44396 -20.26941 -19.61745 -18.83634 -18.67514 -17.87009 -17.65035 -16.00913 -15.86081 -15.70800 -14.91019 -14.48749 -14.30608 -13.92938 -13.65832 -13.28051 -12.84205 -12.77837 -12.52511 -12.28980 -11.72258 -11.67055 -11.41383 -11.37210 -11.29156 -11.10407 -10.96997 -10.47501 -10.37651 -9.85180 -9.56155 -9.36218 -9.23372 -9.04395 -8.66086 -8.12539 -6.26140 -4.36509 -0.10160 0.87601 1.36559 2.18177 2.32702 3.16873 3.24351 3.25336 3.47399 3.66845 4.23968 4.42873 4.55741 4.82076 5.06058 5.09260 5.12591 5.36803 5.49588 5.58017 5.80522 6.03937 6.19931 6.23548 6.28920 6.43904 6.53015 6.83108 6.97474 7.07390 7.16387 7.40777 7.49977 7.53865 7.70086 7.99036 8.32307 8.53377 8.76664 9.30895 10.79268 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.032830 B = 0.003989 C = 0.003711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.681335 B = 7016.890957 C = 7544.302160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.129 4.129 3 C 0.271 3.729 4 H 0.055 0.945 5 C -0.538 4.538 6 H 0.064 0.936 7 C 0.069 3.931 8 N -0.881 5.881 9 Si 0.903 3.097 10 H -0.279 1.279 11 H -0.284 1.284 12 H -0.273 1.273 13 N -0.682 5.682 14 C 0.567 3.433 15 O -0.540 6.540 16 C 0.052 3.948 17 C -0.158 4.158 18 C -0.090 4.090 19 C 0.049 3.951 20 N 0.064 4.936 21 O -0.144 6.144 22 O -0.180 6.180 23 N -0.382 5.382 24 C 0.048 3.952 25 H 0.032 0.968 26 H 0.027 0.973 27 H 0.051 0.949 28 H 0.035 0.965 29 H 0.104 0.896 30 H 0.266 0.734 31 H 0.394 0.606 32 H 0.171 0.829 33 H 0.170 0.830 34 H 0.088 0.912 35 H 0.115 0.885 36 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.623 4.374 -10.629 12.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.168 4.168 3 C 0.170 3.830 4 H 0.073 0.927 5 C -0.577 4.577 6 H 0.082 0.918 7 C -0.135 4.135 8 N -0.518 5.518 9 Si 0.731 3.269 10 H -0.205 1.205 11 H -0.210 1.210 12 H -0.197 1.197 13 N -0.329 5.329 14 C 0.351 3.649 15 O -0.420 6.420 16 C -0.070 4.070 17 C -0.183 4.183 18 C -0.119 4.119 19 C -0.147 4.147 20 N 0.580 4.420 21 O -0.359 6.359 22 O -0.389 6.389 23 N -0.057 5.057 24 C -0.092 4.092 25 H 0.051 0.949 26 H 0.046 0.954 27 H 0.070 0.930 28 H 0.054 0.946 29 H 0.122 0.878 30 H 0.076 0.924 31 H 0.227 0.773 32 H 0.189 0.811 33 H 0.187 0.813 34 H 0.106 0.894 35 H 0.134 0.866 36 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -5.978 4.033 -9.131 11.635 hybrid contribution 0.839 0.124 -0.460 0.965 sum -5.139 4.157 -9.591 11.648 Atomic orbital electron populations 1.21833 0.98524 0.98532 1.00769 1.21967 0.92453 0.99545 1.02800 1.18960 0.94724 0.89150 0.80162 0.92711 1.21173 0.90261 1.39611 1.06630 0.91820 1.24876 0.98830 0.94555 0.95254 1.69877 1.35343 1.37277 1.09291 0.86415 0.84462 0.77748 0.78315 1.20494 1.21005 1.19737 1.46326 1.13103 1.54181 1.19309 1.16803 0.83806 0.79488 0.84833 1.90809 1.54040 1.58641 1.38505 1.21273 0.84331 1.03468 0.97885 1.21555 1.00985 1.05159 0.90644 1.20786 0.89191 1.00474 1.01438 1.20763 0.90221 1.16610 0.87154 1.42516 1.00630 0.98244 1.00636 1.94565 1.89276 1.52996 0.99079 1.94514 1.16510 1.60145 1.67694 1.43749 1.12101 1.42329 1.07529 1.22800 0.86970 1.05165 0.94224 0.94910 0.95354 0.92992 0.94641 0.87828 0.92374 0.77255 0.81117 0.81270 0.89393 0.86635 0.87675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.83 8.58 37.16 0.32 -2.51 16 2 C -0.13 -2.86 5.45 -26.73 -0.15 -3.01 16 3 C 0.27 6.19 2.25 -69.09 -0.16 6.03 16 4 H 0.06 1.46 7.51 -51.93 -0.39 1.07 16 5 C -0.54 -13.10 8.73 -34.44 -0.30 -13.40 16 6 H 0.06 1.47 7.74 -52.49 -0.41 1.07 16 7 C 0.07 1.72 5.29 -17.82 -0.09 1.63 16 8 N -0.88 -23.22 11.29 55.43 0.63 -22.59 16 9 Si 0.90 19.45 29.54 -169.99 -5.02 14.43 16 10 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 11 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 12 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 13 N -0.68 -12.50 5.01 -56.24 -0.28 -12.79 16 14 C 0.57 10.09 6.14 -12.85 -0.08 10.01 16 15 O -0.54 -11.04 12.33 5.19 0.06 -10.97 16 16 C 0.05 0.77 6.89 -81.98 -0.56 0.20 16 17 C -0.16 -1.85 10.35 -39.12 -0.41 -2.25 16 18 C -0.09 -1.02 10.46 -39.98 -0.42 -1.44 16 19 C 0.05 0.66 7.87 -144.06 -1.13 -0.47 16 20 N 0.06 0.91 4.45 33.00 0.15 1.06 16 21 O -0.14 -2.01 19.00 -29.46 -0.56 -2.57 16 22 O -0.18 -2.61 16.57 -29.46 -0.49 -3.10 16 23 N -0.38 -5.40 3.16 -116.62 -0.37 -5.77 16 24 C 0.05 0.61 10.07 59.85 0.60 1.21 16 25 H 0.03 0.64 5.76 -51.93 -0.30 0.34 16 26 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.05 1.12 7.92 -51.93 -0.41 0.71 16 28 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.10 2.58 5.95 -51.93 -0.31 2.27 16 30 H 0.27 6.70 8.31 -40.82 -0.34 6.36 16 31 H 0.39 6.09 7.44 -40.82 -0.30 5.79 16 32 H 0.17 1.51 7.45 -52.48 -0.39 1.12 16 33 H 0.17 1.44 8.06 -52.49 -0.42 1.02 16 34 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.12 1.58 6.51 -51.93 -0.34 1.24 16 36 H 0.10 1.22 5.92 -51.93 -0.31 0.91 16 LS Contribution 307.74 15.07 4.64 4.64 Total: -1.00 -27.84 307.74 -7.60 -35.44 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: -3.98 Total: 6.22 kcal Atomic # 6 Polarization: -1.62 SS G_CDS: -2.38 Total: -3.99 kcal Atomic # 7 Polarization: -40.21 SS G_CDS: 0.12 Total: -40.09 kcal Atomic # 8 Polarization: -15.66 SS G_CDS: -0.98 Total: -16.65 kcal Atomic # 14 Polarization: 19.45 SS G_CDS: -5.02 Total: 14.43 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -27.84 -7.60 -35.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358052206.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.042 kcal (2) G-P(sol) polarization free energy of solvation -27.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.441 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds