Wall clock time and date at job start Tue Mar 31 2020 05:20:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.46993 * 2 1 4 4 C 1.53007 * 109.46822 * 239.99871 * 2 1 3 5 5 O 1.42898 * 109.47071 * 119.99823 * 2 1 3 6 6 C 1.35684 * 117.00132 * 60.00193 * 5 2 1 7 7 C 1.38908 * 119.68488 * 180.02562 * 6 5 2 8 8 C 1.38378 * 119.11397 * 179.97438 * 7 6 5 9 9 C 1.38835 * 118.48135 * 359.73227 * 8 7 6 10 10 C 1.38048 * 119.28976 * 0.53167 * 9 8 7 11 11 C 1.50700 * 119.58359 * 179.73393 * 10 9 8 12 12 S 1.81394 * 109.46854 * 269.72649 * 11 10 9 13 13 C 1.81399 * 102.99894 * 179.97438 * 12 11 10 14 14 C 1.50703 * 109.47147 * 179.97438 * 13 12 11 15 15 H 1.07998 * 120.00275 * 0.02562 * 14 13 12 16 16 C 1.37884 * 119.99709 * 179.97438 * 14 13 12 17 17 N 1.31508 * 120.00040 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99653 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47245 * 60.00334 * 18 16 14 20 20 H 1.48496 * 109.47065 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.47180 * 300.00097 * 18 16 14 22 22 N 1.31966 * 120.83150 * 359.45273 * 10 9 8 23 23 H 1.09003 * 109.47245 * 299.99973 * 1 2 3 24 24 H 1.08997 * 109.47696 * 60.00117 * 1 2 3 25 25 H 1.09000 * 109.47036 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46737 * 180.02562 * 3 2 1 27 27 H 1.09001 * 109.46845 * 299.99676 * 3 2 1 28 28 H 1.08991 * 109.47444 * 60.00144 * 3 2 1 29 29 H 1.09000 * 109.47332 * 299.99839 * 4 2 1 30 30 H 1.08999 * 109.46922 * 60.00350 * 4 2 1 31 31 H 1.09001 * 109.46582 * 179.97438 * 4 2 1 32 32 H 1.07998 * 120.45029 * 359.95280 * 7 6 5 33 33 H 1.08002 * 120.76452 * 180.02562 * 8 7 6 34 34 H 1.08001 * 120.35721 * 180.26039 * 9 8 7 35 35 H 1.09002 * 109.46755 * 149.72574 * 11 10 9 36 36 H 1.08998 * 109.46859 * 29.72340 * 11 10 9 37 37 H 1.09001 * 109.47190 * 299.99732 * 13 12 11 38 38 H 1.09004 * 109.47089 * 59.99865 * 13 12 11 39 39 H 0.97006 * 119.99966 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 8 2.0063 -0.6736 1.1668 6 6 1.6418 -1.9714 1.3208 7 6 2.0732 -2.6796 2.4352 8 6 1.6940 -4.0024 2.5807 9 6 0.8878 -4.5713 1.6040 10 6 0.5009 -3.8095 0.5197 11 6 -0.3692 -4.4221 -0.5474 12 16 0.6782 -5.1622 -1.8302 13 6 -0.5293 -5.8366 -3.0040 14 6 0.1966 -6.4958 -4.1484 15 1 1.2763 -6.5083 -4.1675 16 6 -0.5178 -7.0840 -5.1706 17 7 -1.8326 -7.0692 -5.1471 18 14 0.3820 -7.9005 -6.5894 19 1 1.2338 -8.9997 -6.0684 20 1 -0.6065 -8.4537 -7.5496 21 1 1.2340 -6.8978 -7.2779 22 7 0.8787 -2.5500 0.4086 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 3.1300 1.4424 -0.0005 27 1 1.6766 1.9563 -0.8900 28 1 1.6767 1.9563 0.8899 29 1 1.6766 -1.7490 -1.2493 30 1 1.6766 -0.2074 -2.1393 31 1 3.1300 -0.7209 -1.2495 32 1 2.6965 -2.2043 3.1781 33 1 2.0138 -4.5778 3.4369 34 1 0.5704 -5.6001 1.6893 35 1 -0.9971 -3.6499 -0.9918 36 1 -0.9998 -5.1926 -0.1040 37 1 -1.1556 -6.5718 -2.4988 38 1 -1.1536 -5.0293 -3.3871 39 1 -2.3352 -7.4833 -5.8661 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413012695.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:29 Heat of formation + Delta-G solvation = -12.242602 kcal Electronic energy + Delta-G solvation = -19545.549460 eV Core-core repulsion = 16579.697059 eV Total energy + Delta-G solvation = -2965.852401 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.86847 -38.54802 -34.26184 -33.15322 -32.72296 -31.43664 -28.56969 -27.40263 -27.38233 -27.22517 -23.54060 -23.17324 -22.00170 -20.49574 -17.27965 -16.82879 -16.39269 -15.92320 -15.65078 -15.27561 -14.88288 -14.69082 -14.31213 -14.02839 -13.51150 -13.10652 -12.89451 -12.72974 -12.53217 -12.39094 -12.19063 -12.02321 -11.93752 -11.84728 -11.78918 -11.54249 -10.85527 -10.84615 -10.73781 -10.58680 -10.15675 -9.68487 -9.51992 -9.22734 -8.86891 -8.61532 -8.27854 -6.69188 -6.19950 -4.24221 1.08309 1.37046 2.65486 3.05162 3.28132 3.31201 3.35567 3.81163 3.94513 4.18365 4.35397 4.77571 4.83666 4.86157 5.00038 5.04093 5.17276 5.18051 5.25905 5.48124 5.53465 5.57935 5.60219 5.75433 5.79689 5.84734 5.96308 5.99333 6.04779 6.09307 6.25219 6.40594 6.51932 6.64632 7.08216 7.10194 7.40786 7.74198 7.97980 8.00203 8.77187 9.38785 10.91264 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.021309 B = 0.003978 C = 0.003597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.694641 B = 7036.219949 C = 7782.150680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.120 3.880 3 C -0.139 4.139 4 C -0.185 4.185 5 O -0.303 6.303 6 C 0.329 3.671 7 C -0.203 4.203 8 C -0.041 4.041 9 C -0.196 4.196 10 C 0.195 3.805 11 C -0.050 4.050 12 S -0.281 6.281 13 C 0.089 3.911 14 C -0.512 4.512 15 H 0.066 0.934 16 C 0.066 3.934 17 N -0.893 5.893 18 Si 0.906 3.094 19 H -0.274 1.274 20 H -0.285 1.285 21 H -0.274 1.274 22 N -0.518 5.518 23 H 0.051 0.949 24 H 0.065 0.935 25 H 0.093 0.907 26 H 0.063 0.937 27 H 0.076 0.924 28 H 0.061 0.939 29 H 0.100 0.900 30 H 0.065 0.935 31 H 0.052 0.948 32 H 0.136 0.864 33 H 0.139 0.861 34 H 0.138 0.862 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.036 0.964 38 H 0.037 0.963 39 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.732 11.892 14.461 19.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.083 3.917 3 C -0.196 4.196 4 C -0.242 4.242 5 O -0.212 6.212 6 C 0.151 3.849 7 C -0.224 4.224 8 C -0.066 4.066 9 C -0.218 4.218 10 C 0.057 3.943 11 C -0.198 4.198 12 S -0.054 6.054 13 C -0.058 4.058 14 C -0.552 4.552 15 H 0.085 0.915 16 C -0.137 4.137 17 N -0.531 5.531 18 Si 0.733 3.267 19 H -0.199 1.199 20 H -0.210 1.210 21 H -0.199 1.199 22 N -0.242 5.242 23 H 0.070 0.930 24 H 0.084 0.916 25 H 0.112 0.888 26 H 0.082 0.918 27 H 0.095 0.905 28 H 0.081 0.919 29 H 0.119 0.881 30 H 0.084 0.916 31 H 0.071 0.929 32 H 0.154 0.846 33 H 0.157 0.843 34 H 0.156 0.844 35 H 0.110 0.890 36 H 0.110 0.890 37 H 0.055 0.945 38 H 0.055 0.945 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 5.541 12.482 13.733 19.368 hybrid contribution -0.800 -0.844 -0.231 1.186 sum 4.741 11.638 13.502 18.445 Atomic orbital electron populations 1.22561 0.94429 1.05227 1.01691 1.21700 0.94430 0.91664 0.83915 1.21833 1.01924 0.93179 1.02689 1.22591 1.00918 1.04507 0.96168 1.86259 1.70211 1.19863 1.44836 1.19710 0.90321 0.84786 0.90110 1.20995 1.06928 0.95237 0.99283 1.21328 0.93823 0.93489 0.97963 1.21775 1.02411 1.01786 0.95855 1.20296 0.93214 0.88066 0.92678 1.22137 0.98906 1.02180 0.96622 1.86858 1.20343 1.73249 1.24960 1.21092 0.93384 0.97898 0.93404 1.20620 0.93465 1.36540 1.04561 0.91549 1.24949 0.94913 0.95788 0.98099 1.69941 1.05460 1.44221 1.33475 0.86416 0.79273 0.79725 0.81268 1.19897 1.21043 1.19897 1.67299 1.15523 1.12671 1.28701 0.92988 0.91596 0.88841 0.91802 0.90474 0.91949 0.88110 0.91625 0.92858 0.84565 0.84295 0.84428 0.89010 0.89018 0.94526 0.94506 0.92434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.25 8.35 37.16 0.31 -1.94 16 2 C 0.12 1.51 1.11 -90.62 -0.10 1.41 16 3 C -0.14 -1.35 8.84 37.16 0.33 -1.03 16 4 C -0.18 -2.56 8.35 37.16 0.31 -2.25 16 5 O -0.30 -4.23 9.77 -18.76 -0.18 -4.42 16 6 C 0.33 4.77 6.77 -17.12 -0.12 4.66 16 7 C -0.20 -2.48 10.04 -39.28 -0.39 -2.88 16 8 C -0.04 -0.46 10.17 -39.31 -0.40 -0.86 16 9 C -0.20 -2.61 9.73 -39.43 -0.38 -2.99 16 10 C 0.19 3.04 6.04 -82.60 -0.50 2.54 16 11 C -0.05 -0.86 6.22 36.01 0.22 -0.64 16 12 S -0.28 -6.10 21.64 -107.50 -2.33 -8.43 16 13 C 0.09 2.29 5.70 36.01 0.21 2.50 16 14 C -0.51 -14.40 9.13 -34.44 -0.31 -14.72 16 15 H 0.07 1.87 7.71 -52.49 -0.40 1.47 16 16 C 0.07 1.85 5.46 -17.82 -0.10 1.76 16 17 N -0.89 -25.81 13.29 55.43 0.74 -25.08 16 18 Si 0.91 21.32 29.54 -169.99 -5.02 16.30 16 19 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 21 H -0.27 -6.37 7.11 56.52 0.40 -5.96 16 22 N -0.52 -8.09 4.49 -9.55 -0.04 -8.14 16 23 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 24 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.09 1.35 5.58 -51.93 -0.29 1.06 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.10 1.68 5.58 -51.93 -0.29 1.39 16 30 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 31 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.14 1.36 8.06 -52.49 -0.42 0.93 16 33 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 34 H 0.14 1.63 8.06 -52.49 -0.42 1.20 16 35 H 0.09 1.57 8.14 -51.92 -0.42 1.15 16 36 H 0.09 1.42 8.07 -51.93 -0.42 1.01 16 37 H 0.04 0.97 8.14 -51.92 -0.42 0.54 16 38 H 0.04 0.99 8.14 -51.92 -0.42 0.56 16 39 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 336.80 15.07 5.08 5.08 Total: -1.00 -29.85 336.80 -8.72 -38.57 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: -6.03 Total: 0.54 kcal Atomic # 6 Polarization: -13.50 SS G_CDS: -0.93 Total: -14.43 kcal Atomic # 7 Polarization: -33.90 SS G_CDS: 0.69 Total: -33.21 kcal Atomic # 8 Polarization: -4.23 SS G_CDS: -0.18 Total: -4.42 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 16 Polarization: -6.10 SS G_CDS: -2.33 Total: -8.43 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -29.85 -8.72 -38.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413012695.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.325 kcal (2) G-P(sol) polarization free energy of solvation -29.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds