Wall clock time and date at job start Tue Mar 31 2020 05:29:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52995 * 109.47258 * 2 1 4 4 H 1.09004 * 109.47316 * 305.00034 * 3 2 1 5 5 O 1.42902 * 109.47458 * 64.99797 * 3 2 1 6 6 C 1.35956 * 117.00118 * 260.44103 * 5 3 2 7 7 C 1.38662 * 120.06314 * 5.66522 * 6 5 3 8 8 C 1.38181 * 119.96670 * 179.72384 * 7 6 5 9 9 C 1.38261 * 120.09654 * 0.55262 * 8 7 6 10 10 C 1.38264 * 120.12585 * 359.72531 * 9 8 7 11 11 C 1.38337 * 120.02633 * 359.97438 * 10 9 8 12 12 F 1.35094 * 120.04136 * 180.02562 * 11 10 9 13 13 C 1.50704 * 109.47170 * 185.00012 * 3 2 1 14 14 O 1.21278 * 119.99871 * 245.00465 * 13 3 2 15 15 N 1.34772 * 119.99673 * 64.99897 * 13 3 2 16 16 C 1.46509 * 119.99851 * 180.02562 * 15 13 3 17 17 C 1.50696 * 109.47166 * 179.97438 * 16 15 13 18 18 H 1.07997 * 119.99948 * 0.02562 * 17 16 15 19 19 C 1.37877 * 119.99973 * 179.97438 * 17 16 15 20 20 N 1.31516 * 119.99565 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00019 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47336 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47145 * 120.00223 * 21 19 17 24 24 H 1.48503 * 109.46964 * 239.99967 * 21 19 17 25 25 H 1.09000 * 109.46898 * 59.99756 * 1 2 3 26 26 H 1.08994 * 109.47039 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46731 * 300.00214 * 1 2 3 28 28 H 1.09000 * 109.46898 * 120.00244 * 2 1 3 29 29 H 1.08997 * 109.46950 * 239.99319 * 2 1 3 30 30 H 1.08000 * 120.01072 * 359.97438 * 7 6 5 31 31 H 1.08005 * 119.94795 * 180.27580 * 8 7 6 32 32 H 1.08002 * 119.93828 * 179.74458 * 9 8 7 33 33 H 1.07996 * 119.97968 * 179.97438 * 10 9 8 34 34 H 0.96994 * 120.00473 * 359.97438 * 15 13 3 35 35 H 1.08999 * 109.46400 * 300.00140 * 16 15 13 36 36 H 1.08998 * 109.46805 * 59.99700 * 16 15 13 37 37 H 0.97001 * 119.99629 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 -0.8418 5 8 1.6621 2.0814 1.2210 6 6 0.5680 2.8877 1.1828 7 6 -0.1951 2.9688 0.0279 8 6 -1.3099 3.7845 -0.0070 9 6 -1.6592 4.5289 1.1045 10 6 -0.8978 4.4555 2.2563 11 6 0.2157 3.6358 2.2989 12 9 0.9596 3.5634 3.4242 13 6 3.5420 1.4442 -0.1238 14 8 4.2251 1.8609 0.7875 15 7 4.1260 0.9827 -1.2473 16 6 5.5862 0.9839 -1.3676 17 6 5.9802 0.4212 -2.7088 18 1 5.2192 0.0956 -3.4025 19 6 7.3123 0.3229 -3.0508 20 7 8.2390 0.7198 -2.2061 21 14 7.8008 -0.3739 -4.7137 22 1 6.5797 -0.7455 -5.4727 23 1 8.5648 0.6479 -5.4735 24 1 8.6462 -1.5788 -4.5165 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8934 -0.5139 0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 0.0795 2.3915 -0.8426 31 1 -1.9066 3.8440 -0.9052 32 1 -2.5287 5.1688 1.0731 33 1 -1.1726 5.0383 3.1229 34 1 3.5797 0.6490 -1.9761 35 1 5.9571 2.0049 -1.2782 36 1 6.0163 0.3704 -0.5759 37 1 9.1761 0.6510 -2.4468 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427635213.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:40 Heat of formation + Delta-G solvation = -98.497145 kcal Electronic energy + Delta-G solvation = -21686.606447 eV Core-core repulsion = 18150.800592 eV Total energy + Delta-G solvation = -3535.805855 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.75586 -40.62869 -38.80788 -37.32215 -34.35056 -33.75739 -32.28829 -30.88269 -30.12057 -28.27721 -26.47996 -23.61003 -22.85050 -22.59739 -21.49584 -19.75561 -18.78461 -17.68897 -17.01989 -16.49583 -16.17022 -15.66860 -15.49086 -15.16605 -14.89460 -14.72426 -14.39948 -14.10409 -13.86058 -13.40254 -12.99832 -12.93250 -12.52276 -12.28074 -12.06724 -11.92098 -11.83769 -11.74172 -11.56382 -11.07629 -11.00202 -10.93582 -10.65431 -10.35437 -9.43627 -9.18247 -9.05049 -8.79790 -8.26453 -7.98970 -6.20837 -4.28460 0.93449 1.08451 2.78797 3.14869 3.20842 3.27979 3.30745 3.40166 3.96175 4.15432 4.31327 4.50904 4.63375 4.65307 4.74787 4.98776 5.02112 5.05303 5.15020 5.15888 5.33036 5.45097 5.54053 5.73553 5.83366 5.85864 5.93897 5.97425 6.10852 6.17440 6.47558 7.14994 7.25269 7.33670 7.45293 7.60029 7.90907 8.49457 8.70751 8.96582 9.38068 10.89357 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.028217 B = 0.003586 C = 0.003449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.078291 B = 7805.221684 C = 8115.451809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.138 4.138 3 C 0.062 3.938 4 H 0.099 0.901 5 O -0.272 6.272 6 C 0.106 3.894 7 C -0.189 4.189 8 C -0.089 4.089 9 C -0.136 4.136 10 C -0.118 4.118 11 C 0.068 3.932 12 F -0.130 7.130 13 C 0.497 3.503 14 O -0.530 6.530 15 N -0.706 5.706 16 C 0.250 3.750 17 C -0.544 4.544 18 H 0.064 0.936 19 C 0.064 3.936 20 N -0.884 5.884 21 Si 0.905 3.095 22 H -0.272 1.272 23 H -0.282 1.282 24 H -0.282 1.282 25 H 0.058 0.942 26 H 0.062 0.938 27 H 0.058 0.942 28 H 0.082 0.918 29 H 0.089 0.911 30 H 0.143 0.857 31 H 0.131 0.869 32 H 0.132 0.868 33 H 0.140 0.860 34 H 0.391 0.609 35 H 0.029 0.971 36 H 0.029 0.971 37 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.046 3.419 2.724 22.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.176 4.176 3 C 0.003 3.997 4 H 0.117 0.883 5 O -0.184 6.184 6 C 0.059 3.941 7 C -0.208 4.208 8 C -0.107 4.107 9 C -0.154 4.154 10 C -0.136 4.136 11 C 0.048 3.952 12 F -0.109 7.109 13 C 0.280 3.720 14 O -0.407 6.407 15 N -0.356 5.356 16 C 0.130 3.870 17 C -0.583 4.583 18 H 0.082 0.918 19 C -0.140 4.140 20 N -0.521 5.521 21 Si 0.732 3.268 22 H -0.196 1.196 23 H -0.208 1.208 24 H -0.208 1.208 25 H 0.077 0.923 26 H 0.081 0.919 27 H 0.077 0.923 28 H 0.101 0.899 29 H 0.108 0.892 30 H 0.161 0.839 31 H 0.149 0.851 32 H 0.150 0.850 33 H 0.158 0.842 34 H 0.224 0.776 35 H 0.047 0.953 36 H 0.047 0.953 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -21.134 3.680 3.619 21.756 hybrid contribution 0.242 -0.541 -1.229 1.364 sum -20.892 3.140 2.391 21.261 Atomic orbital electron populations 1.21939 0.94806 1.02472 1.02038 1.21979 0.96849 0.94104 1.04682 1.22601 0.95049 0.94975 0.87121 0.88303 1.86309 1.41330 1.57511 1.33230 1.19165 0.88771 0.92213 0.93985 1.21342 0.97676 1.04015 0.97740 1.20994 0.95933 0.95148 0.98655 1.20897 1.00689 1.01190 0.92613 1.21020 0.93755 0.98715 1.00156 1.17037 0.94158 1.01280 0.82750 1.91525 1.75550 1.95245 1.48536 1.20060 0.88264 0.79811 0.83911 1.90718 1.64543 1.46353 1.39041 1.46395 1.10974 1.62124 1.16114 1.19177 0.72553 0.97937 0.97352 1.21226 0.92525 1.43710 1.00798 0.91760 1.24960 0.96214 0.95133 0.97706 1.69987 1.00801 1.45892 1.35428 0.86344 0.78650 0.78732 0.83079 1.19613 1.20764 1.20762 0.92334 0.91857 0.92285 0.89929 0.89222 0.83942 0.85090 0.85003 0.84197 0.77642 0.95342 0.95282 0.92413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.48 8.49 37.16 0.32 -1.17 16 2 C -0.14 -1.68 5.61 -26.73 -0.15 -1.83 16 3 C 0.06 0.94 2.53 -27.88 -0.07 0.87 16 4 H 0.10 1.21 5.42 -51.93 -0.28 0.93 16 5 O -0.27 -4.63 8.98 -39.46 -0.35 -4.99 16 6 C 0.11 1.49 5.66 -39.18 -0.22 1.27 16 7 C -0.19 -2.02 7.38 -39.45 -0.29 -2.32 16 8 C -0.09 -0.76 10.04 -39.59 -0.40 -1.16 16 9 C -0.14 -1.13 10.04 -39.56 -0.40 -1.53 16 10 C -0.12 -1.20 10.02 -39.54 -0.40 -1.59 16 11 C 0.07 0.93 7.31 -39.30 -0.29 0.65 16 12 F -0.13 -2.09 17.11 2.25 0.04 -2.05 16 13 C 0.50 10.18 7.18 -10.99 -0.08 10.10 16 14 O -0.53 -13.58 16.51 -14.30 -0.24 -13.82 16 15 N -0.71 -14.50 5.45 -61.47 -0.33 -14.84 16 16 C 0.25 6.55 5.43 -5.19 -0.03 6.53 16 17 C -0.54 -14.46 9.28 -34.44 -0.32 -14.78 16 18 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 19 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 20 N -0.88 -25.85 13.29 55.43 0.74 -25.11 16 21 Si 0.90 20.51 29.54 -169.99 -5.02 15.49 16 22 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 23 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 24 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 25 H 0.06 0.46 6.74 -51.93 -0.35 0.11 16 26 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.06 0.62 6.54 -51.93 -0.34 0.28 16 28 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 29 H 0.09 0.98 7.77 -51.93 -0.40 0.57 16 30 H 0.14 1.30 4.28 -52.49 -0.22 1.07 16 31 H 0.13 0.76 8.06 -52.48 -0.42 0.33 16 32 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 33 H 0.14 1.10 8.06 -52.49 -0.42 0.67 16 34 H 0.39 6.61 8.02 -40.82 -0.33 6.29 16 35 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 318.05 15.07 4.79 4.79 Total: -1.00 -33.75 318.05 -7.22 -40.97 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: -4.42 Total: 2.87 kcal Atomic # 6 Polarization: -0.89 SS G_CDS: -2.42 Total: -3.31 kcal Atomic # 7 Polarization: -40.35 SS G_CDS: 0.40 Total: -39.95 kcal Atomic # 8 Polarization: -18.21 SS G_CDS: -0.59 Total: -18.80 kcal Atomic # 9 Polarization: -2.09 SS G_CDS: 0.04 Total: -2.05 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -33.75 -7.22 -40.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427635213.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.527 kcal (2) G-P(sol) polarization free energy of solvation -33.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds