Wall clock time and date at job start Tue Mar 31 2020 05:29:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53010 * 109.47312 * 2 1 4 4 H 1.09000 * 109.46993 * 54.99761 * 3 2 1 5 5 O 1.42904 * 109.46842 * 295.00382 * 3 2 1 6 6 C 1.35951 * 116.99940 * 94.14660 * 5 3 2 7 7 C 1.38661 * 120.06642 * 2.27880 * 6 5 3 8 8 C 1.38182 * 119.97260 * 179.71950 * 7 6 5 9 9 C 1.38258 * 120.09196 * 0.55972 * 8 7 6 10 10 C 1.38259 * 120.12955 * 359.72248 * 9 8 7 11 11 C 1.38336 * 120.02699 * 359.97438 * 10 9 8 12 12 F 1.35101 * 120.04693 * 180.02562 * 11 10 9 13 13 C 1.50696 * 109.47230 * 175.00056 * 3 2 1 14 14 O 1.21282 * 119.99783 * 114.99867 * 13 3 2 15 15 N 1.34770 * 120.00475 * 295.00495 * 13 3 2 16 16 C 1.46499 * 120.00397 * 180.02562 * 15 13 3 17 17 C 1.50695 * 109.47138 * 179.97438 * 16 15 13 18 18 H 1.08003 * 120.00591 * 359.97438 * 17 16 15 19 19 C 1.37883 * 120.00140 * 179.97438 * 17 16 15 20 20 N 1.31514 * 119.99428 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00047 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.46842 * 60.00321 * 21 19 17 23 23 H 1.48501 * 109.46630 * 179.97438 * 21 19 17 24 24 H 1.48491 * 109.47499 * 299.99974 * 21 19 17 25 25 H 1.09003 * 109.47341 * 59.99407 * 1 2 3 26 26 H 1.08998 * 109.47252 * 180.02562 * 1 2 3 27 27 H 1.09013 * 109.47060 * 299.99848 * 1 2 3 28 28 H 1.09006 * 109.47256 * 240.00487 * 2 1 3 29 29 H 1.09002 * 109.47420 * 120.00044 * 2 1 3 30 30 H 1.08010 * 120.01176 * 359.97438 * 7 6 5 31 31 H 1.08004 * 119.95374 * 180.28009 * 8 7 6 32 32 H 1.08002 * 119.93494 * 179.74031 * 9 8 7 33 33 H 1.08000 * 119.98658 * 179.97438 * 10 9 8 34 34 H 0.97008 * 119.99710 * 359.97438 * 15 13 3 35 35 H 1.09004 * 109.46804 * 299.99424 * 16 15 13 36 36 H 1.08997 * 109.47186 * 59.99337 * 16 15 13 37 37 H 0.96998 * 119.99817 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 0.8418 5 8 1.6619 2.0815 -1.2211 6 6 0.5054 2.7961 -1.2113 7 6 -0.2249 2.9199 -0.0391 8 6 -1.3971 3.6516 -0.0300 9 6 -1.8490 4.2511 -1.1910 10 6 -1.1271 4.1255 -2.3634 11 6 0.0503 3.3994 -2.3769 12 9 0.7564 3.2767 -3.5222 13 6 3.5419 1.4444 0.1238 14 8 4.2249 1.8611 -0.7876 15 7 4.1260 0.9828 1.2472 16 6 5.5861 0.9850 1.3678 17 6 5.9802 0.4232 2.7094 18 1 5.2192 0.0974 3.4031 19 6 7.3123 0.3250 3.0514 20 7 8.2389 0.7213 2.2064 21 14 7.8008 -0.3708 4.7147 22 1 7.2955 -1.7618 4.8370 23 1 9.2808 -0.3697 4.8363 24 1 7.2145 0.4655 5.7926 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8901 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5138 0.8900 30 1 0.1245 2.4480 0.8674 31 1 -1.9633 3.7516 0.8842 32 1 -2.7677 4.8189 -1.1820 33 1 -1.4825 4.5944 -3.2691 34 1 3.5797 0.6497 1.9763 35 1 6.0169 0.3721 0.5760 36 1 5.9564 2.0063 1.2789 37 1 9.1761 0.6519 2.4467 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427635214.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:42 Heat of formation + Delta-G solvation = -97.791233 kcal Electronic energy + Delta-G solvation = -21691.597807 eV Core-core repulsion = 18155.822563 eV Total energy + Delta-G solvation = -3535.775244 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -48.76476 -40.65594 -38.81527 -37.33104 -34.35088 -33.73413 -32.28794 -30.88811 -30.15341 -28.27280 -26.48320 -23.61869 -22.84437 -22.60361 -21.48662 -19.75998 -18.79313 -17.68244 -17.02329 -16.50755 -16.21836 -15.66848 -15.48434 -15.17527 -14.90083 -14.71765 -14.40969 -14.11155 -13.85326 -13.40294 -12.98341 -12.95428 -12.51530 -12.30089 -12.05955 -11.91952 -11.84159 -11.74774 -11.57392 -11.10569 -11.04524 -10.90521 -10.62453 -10.35255 -9.47015 -9.16224 -9.06483 -8.79026 -8.26443 -7.99320 -6.20547 -4.28432 0.92929 1.08491 2.77276 3.14074 3.22504 3.27631 3.29028 3.38729 3.96351 4.15062 4.31433 4.49446 4.63377 4.64700 4.74425 4.98259 5.01550 5.04982 5.15346 5.16566 5.32504 5.44358 5.53995 5.74235 5.82665 5.85401 5.93487 5.97048 6.10863 6.17052 6.46977 7.14363 7.24810 7.33044 7.45144 7.59420 7.91019 8.48915 8.70261 8.95977 9.37954 10.89563 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.029754 B = 0.003549 C = 0.003408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.825798 B = 7887.621849 C = 8214.515928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.140 4.140 3 C 0.062 3.938 4 H 0.099 0.901 5 O -0.272 6.272 6 C 0.107 3.893 7 C -0.189 4.189 8 C -0.088 4.088 9 C -0.136 4.136 10 C -0.117 4.117 11 C 0.066 3.934 12 F -0.130 7.130 13 C 0.499 3.501 14 O -0.530 6.530 15 N -0.706 5.706 16 C 0.251 3.749 17 C -0.546 4.546 18 H 0.063 0.937 19 C 0.065 3.935 20 N -0.884 5.884 21 Si 0.905 3.095 22 H -0.275 1.275 23 H -0.285 1.285 24 H -0.275 1.275 25 H 0.058 0.942 26 H 0.062 0.938 27 H 0.058 0.942 28 H 0.082 0.918 29 H 0.089 0.911 30 H 0.143 0.857 31 H 0.131 0.869 32 H 0.132 0.868 33 H 0.140 0.860 34 H 0.391 0.609 35 H 0.029 0.971 36 H 0.029 0.971 37 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.206 3.073 -2.805 22.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.178 4.178 3 C 0.002 3.998 4 H 0.117 0.883 5 O -0.184 6.184 6 C 0.060 3.940 7 C -0.207 4.207 8 C -0.107 4.107 9 C -0.155 4.155 10 C -0.136 4.136 11 C 0.046 3.954 12 F -0.109 7.109 13 C 0.282 3.718 14 O -0.406 6.406 15 N -0.356 5.356 16 C 0.131 3.869 17 C -0.584 4.584 18 H 0.081 0.919 19 C -0.140 4.140 20 N -0.521 5.521 21 Si 0.732 3.268 22 H -0.200 1.200 23 H -0.210 1.210 24 H -0.200 1.200 25 H 0.077 0.923 26 H 0.081 0.919 27 H 0.077 0.923 28 H 0.101 0.899 29 H 0.108 0.892 30 H 0.160 0.840 31 H 0.149 0.851 32 H 0.150 0.850 33 H 0.158 0.842 34 H 0.224 0.776 35 H 0.047 0.953 36 H 0.047 0.953 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -21.275 3.348 -3.699 21.852 hybrid contribution 0.211 -0.550 1.239 1.372 sum -21.064 2.798 -2.460 21.391 Atomic orbital electron populations 1.21957 0.94801 1.02465 1.02071 1.22011 0.96867 0.94229 1.04690 1.22583 0.95172 0.94835 0.87166 0.88343 1.86320 1.35618 1.62076 1.34345 1.19148 0.87671 0.93644 0.93523 1.21313 0.97542 1.04546 0.97331 1.20991 0.95316 0.95807 0.98558 1.20891 1.00740 1.01843 0.91987 1.21013 0.93256 0.99104 1.00219 1.17022 0.93488 1.03869 0.81005 1.91525 1.77817 1.94592 1.46970 1.19974 0.88109 0.79815 0.83931 1.90720 1.64529 1.46343 1.39039 1.46387 1.10980 1.62132 1.16076 1.19167 0.72508 0.97940 0.97317 1.21154 0.92507 1.43966 1.00799 0.91861 1.24956 0.96192 0.95110 0.97701 1.69964 1.00886 1.45742 1.35529 0.86453 0.77551 0.79500 0.83281 1.20029 1.21034 1.20035 0.92338 0.91884 0.92269 0.89949 0.89227 0.83989 0.85091 0.85014 0.84208 0.77634 0.95273 0.95340 0.92290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.50 8.45 37.15 0.31 -1.19 16 2 C -0.14 -1.71 5.61 -26.73 -0.15 -1.86 16 3 C 0.06 0.94 2.57 -27.88 -0.07 0.87 16 4 H 0.10 1.20 5.38 -51.93 -0.28 0.92 16 5 O -0.27 -4.63 9.07 -39.44 -0.36 -4.99 16 6 C 0.11 1.50 5.34 -39.18 -0.21 1.29 16 7 C -0.19 -2.01 7.16 -39.45 -0.28 -2.29 16 8 C -0.09 -0.75 10.04 -39.59 -0.40 -1.15 16 9 C -0.14 -1.12 10.04 -39.57 -0.40 -1.52 16 10 C -0.12 -1.17 10.02 -39.54 -0.40 -1.57 16 11 C 0.07 0.90 7.31 -39.30 -0.29 0.61 16 12 F -0.13 -2.07 17.11 2.25 0.04 -2.03 16 13 C 0.50 10.20 7.18 -10.99 -0.08 10.12 16 14 O -0.53 -13.55 16.51 -14.30 -0.24 -13.78 16 15 N -0.71 -14.46 5.45 -61.48 -0.33 -14.80 16 16 C 0.25 6.57 5.43 -5.20 -0.03 6.54 16 17 C -0.55 -14.50 9.28 -34.44 -0.32 -14.81 16 18 H 0.06 1.55 7.60 -52.48 -0.40 1.15 16 19 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 20 N -0.88 -25.85 13.29 55.43 0.74 -25.11 16 21 Si 0.91 20.49 29.54 -169.99 -5.02 15.47 16 22 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 23 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 24 H -0.27 -6.08 7.11 56.52 0.40 -5.67 16 25 H 0.06 0.63 6.27 -51.93 -0.33 0.30 16 26 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.06 0.47 6.80 -51.92 -0.35 0.12 16 28 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 29 H 0.09 0.98 7.77 -51.93 -0.40 0.58 16 30 H 0.14 1.29 4.54 -52.48 -0.24 1.06 16 31 H 0.13 0.75 8.06 -52.48 -0.42 0.33 16 32 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 33 H 0.14 1.08 8.06 -52.49 -0.42 0.65 16 34 H 0.39 6.59 8.03 -40.82 -0.33 6.26 16 35 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.27 7.34 8.31 -40.82 -0.34 7.01 16 LS Contribution 317.60 15.07 4.79 4.79 Total: -1.00 -33.63 317.60 -7.21 -40.85 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: -4.42 Total: 2.90 kcal Atomic # 6 Polarization: -0.89 SS G_CDS: -2.40 Total: -3.29 kcal Atomic # 7 Polarization: -40.31 SS G_CDS: 0.40 Total: -39.91 kcal Atomic # 8 Polarization: -18.18 SS G_CDS: -0.59 Total: -18.77 kcal Atomic # 9 Polarization: -2.07 SS G_CDS: 0.04 Total: -2.03 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -33.63 -7.21 -40.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427635214.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.946 kcal (2) G-P(sol) polarization free energy of solvation -33.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds