Wall clock time and date at job start Tue Mar 31 2020 06:19:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.36226 * 117.00116 * 2 1 4 4 C 1.38665 * 122.58975 * 0.20235 * 3 2 1 5 5 C 1.33435 * 114.88538 * 180.31204 * 4 3 2 6 6 S 1.75867 * 109.65640 * 359.73344 * 5 4 3 7 7 C 1.33632 * 122.58333 * 180.02562 * 3 2 1 8 8 C 1.50700 * 125.19692 * 359.97438 * 7 3 2 9 9 H 1.08994 * 109.47227 * 15.58242 * 8 7 3 10 10 C 1.53008 * 109.47111 * 255.58337 * 8 7 3 11 11 N 1.46895 * 109.47083 * 135.58464 * 8 7 3 12 12 C 1.46904 * 111.00117 * 206.74971 * 11 8 7 13 13 C 1.52996 * 109.47140 * 182.84077 * 12 11 8 14 14 C 1.50705 * 115.54871 * 80.91348 * 13 12 11 15 15 H 1.08004 * 119.99625 * 219.74283 * 14 13 12 16 16 C 1.37873 * 119.99966 * 39.74414 * 14 13 12 17 17 N 1.31512 * 120.00303 * 17.06171 * 16 14 13 18 18 Si 1.86799 * 119.99714 * 197.06017 * 16 14 13 19 19 H 1.48507 * 109.47453 * 0.02562 * 18 16 14 20 20 H 1.48508 * 109.47138 * 119.99777 * 18 16 14 21 21 H 1.48497 * 109.47475 * 240.00052 * 18 16 14 22 22 C 1.52993 * 117.50013 * 295.23874 * 13 12 11 23 23 C 1.52996 * 60.03370 * 252.49900 * 22 13 12 24 24 H 1.08993 * 109.47343 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46882 * 299.99803 * 1 2 3 26 26 H 1.09002 * 109.47074 * 59.99257 * 1 2 3 27 27 H 1.08000 * 122.55870 * 0.04380 * 4 3 2 28 28 H 1.08001 * 125.16974 * 179.76830 * 5 4 3 29 29 H 1.09002 * 109.46719 * 300.00110 * 10 8 7 30 30 H 1.09001 * 109.46746 * 60.00100 * 10 8 7 31 31 H 1.08995 * 109.47094 * 179.97438 * 10 8 7 32 32 H 1.00904 * 110.99974 * 82.79859 * 11 8 7 33 33 H 1.08995 * 109.46987 * 62.84040 * 12 11 8 34 34 H 1.09004 * 109.46835 * 302.84228 * 12 11 8 35 35 H 0.96999 * 119.99800 * 184.95944 * 17 16 14 36 36 H 1.09002 * 117.50182 * 0.02562 * 22 13 12 37 37 H 1.09004 * 117.50225 * 144.99988 * 22 13 12 38 38 H 1.09003 * 117.49773 * 107.50076 * 23 22 13 39 39 H 1.08997 * 117.50074 * 252.51634 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0475 1.2138 0.0000 4 6 1.3456 2.4097 0.0041 5 6 2.1053 3.5066 -0.0031 6 16 3.8036 3.0500 -0.0082 7 6 3.3774 1.3438 -0.0005 8 6 4.3617 0.2026 -0.0006 9 1 3.8494 -0.7191 -0.2762 10 6 4.9673 0.0513 1.3964 11 7 5.4303 0.4777 -0.9703 12 6 6.0194 -0.7707 -1.4728 13 6 7.1726 -0.4438 -2.4237 14 6 8.4845 -0.1074 -1.7628 15 1 9.1021 0.6844 -2.1605 16 6 8.8964 -0.8105 -0.6506 17 7 8.3419 -1.9674 -0.3614 18 14 10.2421 -0.1197 0.4454 19 1 10.6976 1.1870 -0.0936 20 1 9.7124 0.0701 1.8198 21 1 11.3856 -1.0663 0.4819 22 6 6.8303 0.2835 -3.7254 23 6 7.2243 -1.1945 -3.7567 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5140 -0.8899 27 1 0.2663 2.4502 0.0083 28 1 1.7336 4.5207 -0.0049 29 1 5.4796 0.9731 1.6720 30 1 4.1744 -0.1528 2.1159 31 1 5.6789 -0.7743 1.3965 32 1 6.1374 1.0755 -0.5693 33 1 5.2597 -1.3421 -2.0060 34 1 6.3947 -1.3583 -0.6350 35 1 8.5798 -2.4276 0.4587 36 1 5.7836 0.5296 -3.9043 37 1 7.5540 1.0054 -4.1040 38 1 6.4368 -1.9212 -3.9563 39 1 8.2073 -1.4450 -4.1554 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430739754.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:24 Heat of formation + Delta-G solvation = 23.356881 kcal Electronic energy + Delta-G solvation = -20165.479563 eV Core-core repulsion = 17201.170871 eV Total energy + Delta-G solvation = -2964.308692 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -39.65731 -37.23072 -35.84842 -34.87476 -32.15004 -30.30245 -28.38252 -26.48833 -25.64899 -24.43438 -23.51749 -21.20646 -20.75754 -19.49568 -18.94083 -17.24724 -16.60333 -15.90910 -15.64173 -14.97878 -14.72112 -14.17545 -14.05787 -13.79503 -13.55445 -13.09255 -12.94348 -12.39691 -12.25208 -11.97478 -11.70818 -11.55259 -11.27873 -11.03349 -10.91744 -10.87174 -10.84685 -10.72093 -10.34916 -10.31964 -10.11615 -9.16936 -9.03766 -8.57068 -8.37988 -8.07936 -7.71684 -7.31632 -6.07049 -4.06404 1.20773 1.84626 2.18322 2.88634 3.24907 3.35666 3.40347 3.76276 4.38977 4.76006 4.93702 5.06249 5.14832 5.16131 5.33108 5.42867 5.55690 5.70353 5.73099 5.85238 5.86468 6.04430 6.24911 6.26083 6.38618 6.53892 6.58516 6.64751 6.74888 6.90799 7.00766 7.07824 7.20882 7.47161 7.50354 7.63797 7.95313 8.11648 8.37526 8.50668 8.91506 9.51374 10.94915 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.019427 B = 0.005199 C = 0.004963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.946061 B = 5384.782595 C = 5640.126315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.306 6.306 3 C 0.077 3.923 4 C -0.186 4.186 5 C -0.217 4.217 6 S 0.160 5.840 7 C -0.181 4.181 8 C 0.160 3.840 9 H 0.089 0.911 10 C -0.173 4.173 11 N -0.678 5.678 12 C 0.089 3.911 13 C 0.054 3.946 14 C -0.484 4.484 15 H 0.060 0.940 16 C 0.070 3.930 17 N -0.871 5.871 18 Si 0.878 3.122 19 H -0.271 1.271 20 H -0.282 1.282 21 H -0.285 1.285 22 C -0.194 4.194 23 C -0.201 4.201 24 H 0.095 0.905 25 H 0.048 0.952 26 H 0.049 0.951 27 H 0.137 0.863 28 H 0.162 0.838 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.068 0.932 32 H 0.342 0.658 33 H 0.034 0.966 34 H 0.084 0.916 35 H 0.259 0.741 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.061 0.939 39 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.478 6.966 3.612 16.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.220 6.220 3 C 0.022 3.978 4 C -0.219 4.219 5 C -0.353 4.353 6 S 0.424 5.576 7 C -0.300 4.300 8 C 0.048 3.952 9 H 0.107 0.893 10 C -0.232 4.232 11 N -0.308 5.308 12 C -0.039 4.039 13 C 0.053 3.947 14 C -0.521 4.521 15 H 0.078 0.922 16 C -0.132 4.132 17 N -0.508 5.508 18 Si 0.705 3.295 19 H -0.195 1.195 20 H -0.208 1.208 21 H -0.211 1.211 22 C -0.232 4.232 23 C -0.240 4.240 24 H 0.113 0.887 25 H 0.067 0.933 26 H 0.068 0.932 27 H 0.155 0.845 28 H 0.180 0.820 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.087 0.913 32 H 0.161 0.839 33 H 0.052 0.948 34 H 0.102 0.898 35 H 0.069 0.931 36 H 0.090 0.910 37 H 0.087 0.913 38 H 0.080 0.920 39 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -13.390 7.459 3.167 15.651 hybrid contribution -0.518 -0.571 1.268 1.484 sum -13.908 6.888 4.434 16.142 Atomic orbital electron populations 1.22941 0.79323 1.03371 1.00675 1.86164 1.20284 1.25348 1.90232 1.17551 0.90894 0.84899 1.04434 1.20084 1.00968 0.91616 1.09205 1.25417 0.97724 1.02232 1.09954 1.84327 1.04006 0.97545 1.71742 1.23852 0.94916 0.98435 1.12796 1.19726 0.91216 0.93140 0.91136 0.89252 1.22476 1.00934 1.02471 0.97359 1.60644 1.14715 1.18541 1.36916 1.21642 0.93041 0.89355 0.99854 1.18898 0.94164 0.96875 0.84779 1.20646 1.02683 1.16812 1.11998 0.92203 1.24910 0.96483 0.93693 0.98139 1.70034 1.44260 1.12233 1.24267 0.86758 0.82246 0.79581 0.80887 1.19542 1.20822 1.21145 1.22705 0.99143 0.94184 1.07127 1.22941 0.99882 0.93061 1.08121 0.88701 0.93327 0.93234 0.84518 0.82015 0.92787 0.92897 0.91285 0.83900 0.94779 0.89835 0.93084 0.91016 0.91259 0.92023 0.90762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 9.92 101.05 1.00 1.33 16 2 O -0.31 -4.57 9.97 -20.46 -0.20 -4.78 16 3 C 0.08 1.18 6.59 -41.04 -0.27 0.91 16 4 C -0.19 -2.36 9.16 -41.10 -0.38 -2.73 16 5 C -0.22 -2.63 11.22 29.05 0.33 -2.30 16 6 S 0.16 2.32 23.15 -107.50 -2.49 -0.17 16 7 C -0.18 -3.02 5.43 -35.92 -0.19 -3.22 16 8 C 0.16 2.95 2.97 -68.86 -0.20 2.75 16 9 H 0.09 1.75 7.34 -51.93 -0.38 1.37 16 10 C -0.17 -3.02 9.14 37.16 0.34 -2.68 16 11 N -0.68 -14.00 6.06 -107.95 -0.65 -14.66 16 12 C 0.09 2.08 5.16 -3.82 -0.02 2.06 16 13 C 0.05 1.33 1.80 -155.63 -0.28 1.05 16 14 C -0.48 -12.96 8.95 -34.44 -0.31 -13.27 16 15 H 0.06 1.63 7.87 -52.48 -0.41 1.21 16 16 C 0.07 1.86 5.11 -17.82 -0.09 1.76 16 17 N -0.87 -23.68 11.11 55.43 0.62 -23.07 16 18 Si 0.88 20.46 29.57 -169.99 -5.03 15.44 16 19 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 21 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 22 C -0.19 -4.41 9.90 -26.74 -0.26 -4.68 16 23 C -0.20 -4.78 9.89 -26.70 -0.26 -5.04 16 24 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.05 0.41 7.84 -51.93 -0.41 0.00 16 26 H 0.05 0.44 7.85 -51.93 -0.41 0.03 16 27 H 0.14 1.37 6.91 -52.49 -0.36 1.00 16 28 H 0.16 1.47 8.06 -52.49 -0.42 1.04 16 29 H 0.05 0.91 8.13 -51.93 -0.42 0.49 16 30 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.07 1.33 7.53 -51.93 -0.39 0.93 16 32 H 0.34 7.36 8.37 -39.29 -0.33 7.03 16 33 H 0.03 0.80 7.91 -51.93 -0.41 0.39 16 34 H 0.08 2.13 4.85 -51.93 -0.25 1.88 16 35 H 0.26 6.74 8.32 -40.82 -0.34 6.40 16 36 H 0.07 1.57 8.14 -51.93 -0.42 1.15 16 37 H 0.07 1.54 8.14 -51.93 -0.42 1.12 16 38 H 0.06 1.39 8.08 -51.93 -0.42 0.97 16 39 H 0.07 1.78 8.14 -51.93 -0.42 1.36 16 LS Contribution 336.20 15.07 5.07 5.07 Total: -1.00 -28.24 336.20 -9.17 -37.40 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: -5.87 Total: 8.82 kcal Atomic # 6 Polarization: -23.45 SS G_CDS: -0.61 Total: -24.05 kcal Atomic # 7 Polarization: -37.69 SS G_CDS: -0.04 Total: -37.73 kcal Atomic # 8 Polarization: -4.57 SS G_CDS: -0.20 Total: -4.78 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.03 Total: 15.44 kcal Atomic # 16 Polarization: 2.32 SS G_CDS: -2.49 Total: -0.17 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -28.24 -9.17 -37.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430739754.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.760 kcal (2) G-P(sol) polarization free energy of solvation -28.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.403 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds