Wall clock time and date at job start Tue Mar 31 2020 06:19:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.36226 * 117.00220 * 2 1 4 4 C 1.38671 * 122.58457 * 359.97438 * 3 2 1 5 5 C 1.33438 * 114.88471 * 180.02562 * 4 3 2 6 6 S 1.75872 * 109.65814 * 359.75520 * 5 4 3 7 7 C 1.33624 * 122.58980 * 180.02562 * 3 2 1 8 8 C 1.50704 * 125.19565 * 359.95193 * 7 3 2 9 9 H 1.09004 * 109.46905 * 341.60973 * 8 7 3 10 10 C 1.52997 * 109.47161 * 101.61276 * 8 7 3 11 11 N 1.46894 * 109.47197 * 221.61484 * 8 7 3 12 12 C 1.46899 * 111.00391 * 151.49016 * 11 8 7 13 13 C 1.52997 * 109.47376 * 181.73758 * 12 11 8 14 14 C 1.50703 * 115.55245 * 35.21063 * 13 12 11 15 15 H 1.07996 * 120.00081 * 266.09702 * 14 13 12 16 16 C 1.37874 * 119.99906 * 86.09030 * 14 13 12 17 17 N 1.31514 * 120.00183 * 353.56527 * 16 14 13 18 18 Si 1.86798 * 119.99875 * 173.56788 * 16 14 13 19 19 H 1.48499 * 109.47213 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.47130 * 120.00442 * 18 16 14 21 21 H 1.48508 * 109.47113 * 239.99670 * 18 16 14 22 22 C 1.52996 * 117.49969 * 249.50104 * 13 12 11 23 23 C 1.52994 * 60.00230 * 252.51115 * 22 13 12 24 24 H 1.08997 * 109.47401 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46701 * 299.99890 * 1 2 3 26 26 H 1.08996 * 109.47479 * 59.99834 * 1 2 3 27 27 H 1.07995 * 122.55578 * 359.97438 * 4 3 2 28 28 H 1.07999 * 125.16954 * 180.02562 * 5 4 3 29 29 H 1.09007 * 109.46999 * 300.00097 * 10 8 7 30 30 H 1.09001 * 109.47058 * 59.99710 * 10 8 7 31 31 H 1.08995 * 109.47236 * 180.02562 * 10 8 7 32 32 H 1.00906 * 110.99850 * 275.44418 * 11 8 7 33 33 H 1.09005 * 109.47051 * 61.73819 * 12 11 8 34 34 H 1.08997 * 109.46927 * 301.74041 * 12 11 8 35 35 H 0.97001 * 120.00220 * 185.01231 * 17 16 14 36 36 H 1.08999 * 117.50261 * 0.02562 * 22 13 12 37 37 H 1.09000 * 117.50359 * 145.02322 * 22 13 12 38 38 H 1.09006 * 117.50307 * 252.51101 * 23 22 13 39 39 H 1.09007 * 117.52107 * 107.48012 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0475 1.2138 0.0000 4 6 1.3455 2.4097 -0.0005 5 6 2.1052 3.5067 -0.0010 6 16 3.8036 3.0502 0.0063 7 6 3.3774 1.3439 -0.0005 8 6 4.3618 0.2028 -0.0001 9 1 3.8608 -0.7092 0.3249 10 6 4.9143 0.0054 -1.4131 11 7 5.4659 0.5089 0.9191 12 6 6.0473 -0.7216 1.4720 13 6 7.1627 -0.3617 2.4554 14 6 6.9353 0.8873 3.2675 15 1 7.3297 1.8328 2.9258 16 6 6.2236 0.8228 4.4466 17 7 5.6359 -0.2995 4.7995 18 14 6.0941 2.3297 5.5429 19 1 6.8376 3.4569 4.9249 20 1 4.6662 2.7063 5.7000 21 1 6.6748 2.0241 6.8751 22 6 8.6001 -0.6842 2.0422 23 6 7.9115 -1.5145 3.1272 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 0.2663 2.4500 -0.0014 28 1 1.7335 4.5207 -0.0010 29 1 4.0949 -0.2218 -2.0952 30 1 5.4153 0.9173 -1.7380 31 1 5.6259 -0.8202 -1.4129 32 1 6.1709 1.0690 0.4636 33 1 6.4576 -1.3253 0.6624 34 1 5.2738 -1.2876 1.9911 35 1 5.0755 -0.3257 5.5908 36 1 8.7512 -1.1524 1.0696 37 1 9.3816 0.0071 2.3576 38 1 8.2398 -1.3694 4.1565 39 1 7.6091 -2.5294 2.8689 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430739757.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:36 Heat of formation + Delta-G solvation = 26.852931 kcal Electronic energy + Delta-G solvation = -20196.658193 eV Core-core repulsion = 17232.501101 eV Total energy + Delta-G solvation = -2964.157092 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 3.37 seconds Orbital eigenvalues (eV) -39.56586 -37.21442 -35.81387 -34.92515 -31.69327 -30.40421 -28.44114 -26.44301 -25.41618 -24.45133 -23.50256 -21.21191 -20.83887 -19.41592 -18.93104 -17.14197 -16.54060 -15.73803 -15.55305 -14.92932 -14.59410 -14.19812 -14.11134 -13.60958 -13.43981 -13.27475 -12.70492 -12.58987 -12.20508 -11.99793 -11.74044 -11.59052 -11.36316 -10.97777 -10.88806 -10.83199 -10.77808 -10.59135 -10.35083 -10.29520 -10.04088 -9.35755 -8.73449 -8.27756 -8.19906 -7.93073 -7.62783 -7.32862 -5.80370 -3.81151 1.31172 1.95877 2.28792 2.99126 3.41846 3.49701 3.53202 3.85192 4.59108 4.82416 5.02768 5.21950 5.24742 5.29992 5.42274 5.47197 5.51398 5.55984 5.59973 5.73999 5.93905 6.08926 6.19043 6.20372 6.25877 6.40353 6.42548 6.61118 6.64540 6.70518 6.81719 7.05602 7.19654 7.52568 7.56336 7.57472 8.10239 8.11990 8.33779 8.66476 9.14051 9.80861 11.29477 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.015372 B = 0.006214 C = 0.005477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1821.083766 B = 4505.191473 C = 5110.668213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.306 6.306 3 C 0.078 3.922 4 C -0.186 4.186 5 C -0.218 4.218 6 S 0.167 5.833 7 C -0.180 4.180 8 C 0.157 3.843 9 H 0.091 0.909 10 C -0.173 4.173 11 N -0.648 5.648 12 C 0.112 3.888 13 C 0.046 3.954 14 C -0.462 4.462 15 H 0.057 0.943 16 C 0.075 3.925 17 N -0.882 5.882 18 Si 0.883 3.117 19 H -0.274 1.274 20 H -0.287 1.287 21 H -0.289 1.289 22 C -0.219 4.219 23 C -0.156 4.156 24 H 0.094 0.906 25 H 0.050 0.950 26 H 0.047 0.953 27 H 0.136 0.864 28 H 0.162 0.838 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.057 0.943 32 H 0.332 0.668 33 H -0.005 1.005 34 H 0.068 0.932 35 H 0.254 0.746 36 H 0.060 0.940 37 H 0.075 0.925 38 H 0.080 0.920 39 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.297 3.081 -12.070 14.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.221 6.221 3 C 0.023 3.977 4 C -0.220 4.220 5 C -0.354 4.354 6 S 0.430 5.570 7 C -0.299 4.299 8 C 0.045 3.955 9 H 0.109 0.891 10 C -0.233 4.233 11 N -0.277 5.277 12 C -0.016 4.016 13 C 0.046 3.954 14 C -0.500 4.500 15 H 0.075 0.925 16 C -0.126 4.126 17 N -0.520 5.520 18 Si 0.712 3.288 19 H -0.199 1.199 20 H -0.213 1.213 21 H -0.215 1.215 22 C -0.257 4.257 23 C -0.194 4.194 24 H 0.112 0.888 25 H 0.068 0.932 26 H 0.066 0.934 27 H 0.154 0.846 28 H 0.179 0.821 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.150 0.850 33 H 0.013 0.987 34 H 0.086 0.914 35 H 0.064 0.936 36 H 0.078 0.922 37 H 0.094 0.906 38 H 0.099 0.901 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -7.310 3.708 -11.322 13.978 hybrid contribution -1.470 -0.182 0.048 1.482 sum -8.780 3.526 -11.275 14.719 Atomic orbital electron populations 1.22930 0.79374 1.03297 1.00677 1.86146 1.20263 1.25409 1.90244 1.17531 0.90913 0.84867 1.04351 1.20066 1.00931 0.91637 1.09335 1.25412 0.97818 1.02213 1.09975 1.84257 1.03916 0.97445 1.71346 1.23747 0.94798 0.98388 1.12985 1.19788 0.91476 0.93503 0.90747 0.89136 1.22507 1.01073 1.01655 0.98017 1.60329 1.11998 1.20128 1.35244 1.21479 0.97343 0.88797 0.94015 1.18918 0.85712 0.95662 0.95131 1.20137 1.34324 0.92028 1.03485 0.92525 1.24828 0.95433 0.95121 0.97260 1.69982 1.30936 1.25358 1.25763 0.86685 0.77605 0.83900 0.80635 1.19855 1.21321 1.21545 1.23103 0.99723 1.05221 0.97611 1.22467 1.05895 0.94676 0.96366 0.88763 0.93174 0.93408 0.84585 0.82076 0.92519 0.92614 0.92385 0.84967 0.98720 0.91354 0.93587 0.92179 0.90638 0.90101 0.92221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 9.92 101.05 1.00 1.37 16 2 O -0.31 -4.88 10.00 -20.46 -0.20 -5.08 16 3 C 0.08 1.29 6.59 -41.04 -0.27 1.02 16 4 C -0.19 -2.62 9.16 -41.10 -0.38 -3.00 16 5 C -0.22 -2.95 11.22 29.05 0.33 -2.62 16 6 S 0.17 2.60 23.09 -107.50 -2.48 0.12 16 7 C -0.18 -3.15 5.45 -35.92 -0.20 -3.35 16 8 C 0.16 2.83 2.96 -68.87 -0.20 2.62 16 9 H 0.09 1.77 7.29 -51.93 -0.38 1.39 16 10 C -0.17 -2.56 9.16 37.16 0.34 -2.22 16 11 N -0.65 -13.40 5.25 -107.96 -0.57 -13.96 16 12 C 0.11 2.52 5.62 -3.83 -0.02 2.50 16 13 C 0.05 1.14 1.76 -155.66 -0.27 0.87 16 14 C -0.46 -12.55 8.06 -34.44 -0.28 -12.83 16 15 H 0.06 1.56 7.82 -52.49 -0.41 1.15 16 16 C 0.08 2.12 5.38 -17.82 -0.10 2.02 16 17 N -0.88 -25.67 12.88 55.43 0.71 -24.96 16 18 Si 0.88 22.00 29.55 -169.99 -5.02 16.98 16 19 H -0.27 -6.71 7.11 56.52 0.40 -6.30 16 20 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 21 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 22 C -0.22 -4.80 9.88 -26.74 -0.26 -5.07 16 23 C -0.16 -3.72 9.40 -26.73 -0.25 -3.97 16 24 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.05 0.52 7.84 -51.93 -0.41 0.12 16 26 H 0.05 0.44 7.84 -51.93 -0.41 0.03 16 27 H 0.14 1.54 6.91 -52.49 -0.36 1.18 16 28 H 0.16 1.68 8.06 -52.49 -0.42 1.26 16 29 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.05 0.78 8.12 -51.93 -0.42 0.36 16 31 H 0.06 0.84 7.73 -51.93 -0.40 0.44 16 32 H 0.33 6.58 8.43 -39.29 -0.33 6.25 16 33 H -0.01 -0.11 7.50 -51.93 -0.39 -0.50 16 34 H 0.07 1.71 8.01 -51.93 -0.42 1.29 16 35 H 0.25 7.18 8.32 -40.82 -0.34 6.84 16 36 H 0.06 1.19 8.05 -51.93 -0.42 0.77 16 37 H 0.08 1.64 8.14 -51.93 -0.42 1.22 16 38 H 0.08 2.07 8.14 -51.93 -0.42 1.65 16 39 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 LS Contribution 339.33 15.07 5.11 5.11 Total: -1.00 -30.20 339.33 -9.03 -39.23 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -6.02 Total: 5.23 kcal Atomic # 6 Polarization: -22.10 SS G_CDS: -0.56 Total: -22.67 kcal Atomic # 7 Polarization: -39.07 SS G_CDS: 0.15 Total: -38.92 kcal Atomic # 8 Polarization: -4.88 SS G_CDS: -0.20 Total: -5.08 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Atomic # 16 Polarization: 2.60 SS G_CDS: -2.48 Total: 0.12 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -30.20 -9.03 -39.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430739757.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.080 kcal (2) G-P(sol) polarization free energy of solvation -30.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.227 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.38 seconds