Wall clock time and date at job start Tue Mar 31 2020 06:18:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09009 * 109.46704 * 2 1 4 4 C 1.50692 * 109.47355 * 240.00315 * 2 1 3 5 5 O 1.21286 * 120.00156 * 239.99313 * 4 2 1 6 6 N 1.34779 * 120.00380 * 60.27405 * 4 2 1 7 7 C 1.46497 * 120.00450 * 179.72574 * 6 4 2 8 8 C 1.52996 * 109.47336 * 179.97438 * 7 6 4 9 9 C 1.53007 * 109.47158 * 300.00031 * 8 7 6 10 10 C 1.52995 * 109.47234 * 59.99939 * 8 7 6 11 11 C 1.50701 * 109.47389 * 180.02562 * 8 7 6 12 12 H 1.07999 * 119.99801 * 1.34327 * 11 8 7 13 13 C 1.37880 * 120.00103 * 181.35106 * 11 8 7 14 14 N 1.31507 * 119.99696 * 193.97586 * 13 11 8 15 15 Si 1.86795 * 119.99856 * 13.97136 * 13 11 8 16 16 H 1.48498 * 109.47509 * 84.55363 * 15 13 11 17 17 H 1.48506 * 109.47071 * 204.54928 * 15 13 11 18 18 H 1.48501 * 109.47428 * 324.54928 * 15 13 11 19 19 C 1.50699 * 109.47256 * 119.99647 * 2 1 3 20 20 C 1.33393 * 125.20549 * 240.00005 * 19 2 1 21 21 C 1.38425 * 114.91695 * 179.97438 * 20 19 2 22 22 C 1.33383 * 114.92435 * 0.02562 * 21 20 19 23 23 S 1.75882 * 125.20086 * 59.69992 * 19 2 1 24 24 H 1.08996 * 109.47261 * 59.99900 * 1 2 3 25 25 H 1.09002 * 109.46313 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47279 * 299.99769 * 1 2 3 27 27 H 0.97005 * 119.99581 * 359.71922 * 6 4 2 28 28 H 1.08996 * 109.47155 * 300.00153 * 7 6 4 29 29 H 1.09006 * 109.46858 * 59.99808 * 7 6 4 30 30 H 1.09001 * 109.46694 * 69.36900 * 9 8 7 31 31 H 1.09001 * 109.46674 * 189.36516 * 9 8 7 32 32 H 1.08993 * 109.46844 * 309.36602 * 9 8 7 33 33 H 1.09002 * 109.47448 * 59.99674 * 10 8 7 34 34 H 1.09003 * 109.47623 * 180.02562 * 10 8 7 35 35 H 1.09007 * 109.47140 * 300.00344 * 10 8 7 36 36 H 0.97000 * 120.00149 * 180.02562 * 14 13 11 37 37 H 1.07991 * 122.53903 * 0.02562 * 20 19 2 38 38 H 1.08000 * 122.53585 * 180.02562 * 21 20 19 39 39 H 1.07998 * 125.20435 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7103 -1.2304 5 8 2.7298 -1.6963 -1.1192 6 7 1.7114 -0.2466 -2.4546 7 6 2.2048 -0.9336 -3.6507 8 6 1.6988 -0.2095 -4.8999 9 6 0.1688 -0.2108 -4.9056 10 6 2.2076 1.2333 -4.8942 11 6 2.2058 -0.9166 -6.1304 12 1 2.8087 -1.8072 -6.0315 13 6 1.9000 -0.4265 -7.3824 14 7 2.0976 -1.1730 -8.4469 15 14 1.2051 1.2976 -7.5663 16 1 2.3188 2.2793 -7.5999 17 1 0.4289 1.3863 -8.8292 18 1 0.3150 1.5979 -6.4161 19 6 2.0324 -0.7103 1.2305 20 6 2.8025 -0.1645 2.1730 21 6 3.1396 -1.0123 3.2140 22 6 2.6436 -2.2467 3.1167 23 16 1.6867 -2.3837 1.6473 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.1536 0.5420 -2.5435 28 1 3.2947 -0.9331 -3.6464 29 1 1.8419 -1.9615 -3.6550 30 1 -0.1980 0.4387 -4.1108 31 1 -0.1912 0.1536 -5.8678 32 1 -0.1943 -1.2254 -4.7424 33 1 3.2976 1.2343 -4.8901 34 1 1.8468 1.7494 -5.7840 35 1 1.8405 1.7446 -4.0042 36 1 1.8828 -0.8281 -9.3277 37 1 3.1370 0.8613 2.1277 38 1 3.7573 -0.6981 4.0423 39 1 2.8018 -3.0395 3.8328 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457990401.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:50 Heat of formation + Delta-G solvation = 3.014520 kcal Electronic energy + Delta-G solvation = -19968.680893 eV Core-core repulsion = 17003.490090 eV Total energy + Delta-G solvation = -2965.190803 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.77312 -37.80093 -36.70708 -34.02823 -33.15790 -31.44784 -28.65987 -26.45932 -26.17244 -25.07596 -24.55415 -22.88502 -20.09040 -19.41431 -19.22944 -17.37569 -16.61454 -16.08629 -15.66338 -15.33432 -14.98389 -14.81157 -13.90270 -13.70751 -13.26663 -13.03564 -12.85467 -12.73332 -12.67782 -12.30833 -12.22727 -12.20649 -12.06594 -11.79444 -11.57944 -11.26961 -10.62358 -10.45982 -10.33302 -10.19608 -10.09315 -9.55498 -9.14599 -8.72727 -8.65296 -8.57091 -8.46436 -8.32852 -6.16565 -4.13972 0.99377 1.68093 2.07855 2.70156 2.91474 3.21952 3.28845 3.36897 3.62262 4.33509 4.43850 4.83468 4.93339 5.02000 5.13976 5.18251 5.42701 5.48533 5.55568 5.62938 5.75865 5.91977 6.01880 6.03557 6.06545 6.25513 6.32472 6.43598 6.46324 6.49703 6.60270 6.66700 6.75743 6.93659 7.19371 7.40344 7.69928 7.88867 8.42356 8.55638 8.88962 9.47162 10.96587 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.039665 B = 0.003804 C = 0.003703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.750668 B = 7358.558169 C = 7559.296631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.045 4.045 3 H 0.111 0.889 4 C 0.506 3.494 5 O -0.533 6.533 6 N -0.719 5.719 7 C 0.142 3.858 8 C 0.028 3.972 9 C -0.141 4.141 10 C -0.148 4.148 11 C -0.514 4.514 12 H 0.076 0.924 13 C 0.075 3.925 14 N -0.891 5.891 15 Si 0.885 3.115 16 H -0.286 1.286 17 H -0.305 1.305 18 H -0.249 1.249 19 C -0.151 4.151 20 C -0.144 4.144 21 C -0.137 4.137 22 C -0.229 4.229 23 S 0.142 5.858 24 H 0.070 0.930 25 H 0.063 0.937 26 H 0.070 0.930 27 H 0.396 0.604 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.021 0.979 31 H 0.056 0.944 32 H 0.047 0.953 33 H 0.053 0.947 34 H 0.042 0.958 35 H 0.029 0.971 36 H 0.265 0.735 37 H 0.136 0.864 38 H 0.135 0.865 39 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.724 4.554 20.912 21.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.068 4.068 3 H 0.129 0.871 4 C 0.290 3.710 5 O -0.410 6.410 6 N -0.371 5.371 7 C 0.020 3.980 8 C 0.027 3.973 9 C -0.199 4.199 10 C -0.204 4.204 11 C -0.552 4.552 12 H 0.094 0.906 13 C -0.127 4.127 14 N -0.527 5.527 15 Si 0.718 3.282 16 H -0.214 1.214 17 H -0.234 1.234 18 H -0.175 1.175 19 C -0.269 4.269 20 C -0.175 4.175 21 C -0.168 4.168 22 C -0.365 4.365 23 S 0.407 5.593 24 H 0.089 0.911 25 H 0.082 0.918 26 H 0.089 0.911 27 H 0.231 0.769 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.040 0.960 31 H 0.075 0.925 32 H 0.066 0.934 33 H 0.072 0.928 34 H 0.060 0.940 35 H 0.048 0.952 36 H 0.075 0.925 37 H 0.154 0.846 38 H 0.153 0.847 39 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -4.055 2.607 20.097 20.667 hybrid contribution 0.422 2.500 0.304 2.554 sum -3.633 5.107 20.401 21.342 Atomic orbital electron populations 1.21849 0.91856 1.03261 1.03153 1.19869 0.97553 0.99885 0.89496 0.87119 1.20317 0.81042 0.85061 0.84574 1.90727 1.37573 1.26095 1.86599 1.46272 1.52910 1.31905 1.05975 1.21517 0.98565 0.95874 0.82030 1.18720 0.92535 0.92226 0.93797 1.22294 0.97821 0.99835 0.99942 1.22361 1.01209 0.98326 0.98547 1.20717 1.34063 1.12377 0.87995 0.90559 1.24974 0.94668 0.97308 0.95773 1.69948 1.48157 1.35945 0.98678 0.87294 0.79349 0.85559 0.75987 1.21361 1.23387 1.17516 1.23947 1.05372 0.97652 0.99915 1.20033 1.00999 1.01497 0.94949 1.20040 1.03131 0.93200 1.00395 1.25684 1.06821 1.01464 1.02546 1.84337 1.49144 1.09881 1.15896 0.91129 0.91783 0.91101 0.76920 0.91984 0.91863 0.95980 0.92522 0.93395 0.92790 0.94024 0.95211 0.92538 0.84623 0.84687 0.82238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 9.01 37.16 0.33 -1.05 16 2 C -0.04 -0.53 3.10 -92.93 -0.29 -0.82 16 3 H 0.11 1.07 8.09 -51.92 -0.42 0.65 16 4 C 0.51 8.05 7.12 -10.99 -0.08 7.98 16 5 O -0.53 -10.56 15.27 5.55 0.08 -10.48 16 6 N -0.72 -11.41 4.90 -60.30 -0.30 -11.70 16 7 C 0.14 2.81 4.49 -4.05 -0.02 2.80 16 8 C 0.03 0.61 0.50 -155.66 -0.08 0.53 16 9 C -0.14 -2.81 7.53 37.16 0.28 -2.53 16 10 C -0.15 -2.93 7.52 37.16 0.28 -2.65 16 11 C -0.51 -13.70 8.62 -34.44 -0.30 -14.00 16 12 H 0.08 2.25 7.99 -52.49 -0.42 1.83 16 13 C 0.08 2.08 5.32 -17.82 -0.09 1.99 16 14 N -0.89 -26.52 13.96 55.43 0.77 -25.75 16 15 Si 0.89 20.86 22.79 -169.99 -3.87 16.99 16 16 H -0.29 -6.72 7.10 56.52 0.40 -6.32 16 17 H -0.31 -7.38 7.11 56.52 0.40 -6.97 16 18 H -0.25 -5.30 4.65 56.52 0.26 -5.03 16 19 C -0.15 -1.91 4.60 -36.00 -0.17 -2.07 16 20 C -0.14 -1.64 10.02 -41.21 -0.41 -2.06 16 21 C -0.14 -1.45 10.18 -41.21 -0.42 -1.87 16 22 C -0.23 -2.50 11.23 29.04 0.33 -2.17 16 23 S 0.14 1.82 22.19 -107.50 -2.38 -0.56 16 24 H 0.07 0.61 7.57 -51.93 -0.39 0.22 16 25 H 0.06 0.68 7.99 -51.93 -0.42 0.26 16 26 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 27 H 0.40 5.35 5.69 -40.82 -0.23 5.11 16 28 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 29 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 30 H 0.02 0.36 7.13 -51.93 -0.37 -0.01 16 31 H 0.06 1.21 4.30 -51.93 -0.22 0.98 16 32 H 0.05 0.95 8.12 -51.93 -0.42 0.52 16 33 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 34 H 0.04 0.88 2.25 -51.93 -0.12 0.76 16 35 H 0.03 0.48 6.86 -51.92 -0.36 0.12 16 36 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 37 H 0.14 1.27 8.06 -52.49 -0.42 0.84 16 38 H 0.14 1.11 8.06 -52.49 -0.42 0.68 16 39 H 0.16 1.34 8.06 -52.49 -0.42 0.92 16 LS Contribution 318.23 15.07 4.80 4.80 Total: -1.00 -31.26 318.23 -7.13 -38.39 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: -5.60 Total: 4.25 kcal Atomic # 6 Polarization: -15.30 SS G_CDS: -0.63 Total: -15.93 kcal Atomic # 7 Polarization: -37.93 SS G_CDS: 0.48 Total: -37.45 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: 0.08 Total: -10.48 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -3.87 Total: 16.99 kcal Atomic # 16 Polarization: 1.82 SS G_CDS: -2.38 Total: -0.56 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -31.26 -7.13 -38.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457990401.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.405 kcal (2) G-P(sol) polarization free energy of solvation -31.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.390 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds