Wall clock time and date at job start Tue Mar 31 2020 05:30:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46506 * 109.46622 * 191.08560 * 3 2 1 5 5 C 1.34773 * 119.99969 * 269.72163 * 4 3 2 6 6 O 1.21283 * 120.00092 * 180.02562 * 5 4 3 7 7 C 1.50702 * 120.00430 * 0.02562 * 5 4 3 8 8 S 1.80991 * 109.47468 * 179.97438 * 7 5 4 9 9 C 1.76194 * 100.00117 * 179.97438 * 8 7 5 10 10 H 1.08004 * 120.00236 * 359.97438 * 9 8 7 11 11 C 1.38806 * 120.00259 * 180.02562 * 9 8 7 12 12 N 1.31631 * 119.99402 * 359.97438 * 11 9 8 13 13 Si 1.86795 * 120.00220 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.47190 * 59.99923 * 13 11 9 15 15 H 1.48499 * 109.47305 * 179.97438 * 13 11 9 16 16 H 1.48508 * 109.47336 * 299.99858 * 13 11 9 17 17 C 1.46499 * 119.99936 * 90.00198 * 4 3 2 18 18 C 1.52996 * 109.47349 * 239.99919 * 17 4 3 19 19 C 1.52992 * 109.47467 * 179.97438 * 18 17 4 20 20 C 1.53004 * 109.47082 * 60.00069 * 19 18 17 21 21 C 1.53004 * 109.47149 * 299.99870 * 20 19 18 22 22 C 1.52998 * 109.47194 * 119.99621 * 17 4 3 23 23 H 4.40641 * 5.51537 * 179.97438 * 4 1 2 24 24 H 1.09000 * 109.47019 * 71.09320 * 3 2 1 25 25 H 1.09000 * 109.47191 * 311.08408 * 3 2 1 26 26 H 1.09009 * 109.46564 * 299.99895 * 7 5 4 27 27 H 1.09001 * 109.47030 * 59.99569 * 7 5 4 28 28 H 0.97005 * 119.99021 * 180.02562 * 12 11 9 29 29 H 1.09004 * 109.46973 * 0.02562 * 17 4 3 30 30 H 1.08998 * 109.47017 * 300.00387 * 18 17 4 31 31 H 1.09000 * 109.46797 * 59.99472 * 18 17 4 32 32 H 1.08998 * 109.47497 * 300.00312 * 19 18 17 33 33 H 1.08998 * 109.47610 * 179.97438 * 19 18 17 34 34 H 1.09005 * 109.47449 * 180.02562 * 20 19 18 35 35 H 1.08998 * 109.47212 * 59.99511 * 20 19 18 36 36 H 1.09004 * 109.46970 * 300.00284 * 21 20 19 37 37 H 1.08994 * 109.47496 * 179.97438 * 21 20 19 38 38 H 1.08998 * 109.47156 * 299.99944 * 22 17 4 39 39 H 1.09004 * 109.47239 * 60.00068 * 22 17 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.3564 0.2656 5 6 3.3632 2.2026 -0.7580 6 8 3.7673 3.3248 -0.5382 7 6 3.1177 1.7544 -2.1757 8 16 3.5148 3.1053 -3.3129 9 6 3.1483 2.3282 -4.8511 10 1 2.7937 1.3082 -4.8699 11 6 3.3163 3.0265 -6.0390 12 7 3.7490 4.2694 -6.0161 13 14 2.9284 2.2023 -7.6698 14 1 1.5003 1.7957 -7.6916 15 1 3.1886 3.1540 -8.7796 16 1 3.7874 1.0021 -7.8346 17 6 3.3776 1.7903 1.6434 18 6 2.4924 2.9967 1.9626 19 6 2.7467 3.4494 3.4017 20 6 4.2175 3.8397 3.5612 21 6 5.1028 2.6332 3.2422 22 6 4.8484 2.1806 1.8024 23 1 -1.0502 -0.0003 -0.0003 24 1 3.0095 -0.3322 -0.9722 25 1 3.0097 -0.6745 0.7746 26 1 3.7484 0.8938 -2.3990 27 1 2.0701 1.4773 -2.2930 28 1 3.8660 4.7575 -6.8462 29 1 3.1424 0.9753 2.3280 30 1 2.7280 3.8114 1.2779 31 1 1.4446 2.7186 1.8493 32 1 2.5108 2.6345 4.0860 33 1 2.1164 4.3092 3.6289 34 1 4.3988 4.1618 4.5867 35 1 4.4535 4.6545 2.8768 36 1 4.8667 1.8183 3.9265 37 1 6.1506 2.9113 3.3554 38 1 5.4790 1.3211 1.5751 39 1 5.0841 2.9954 1.1178 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490593909.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:03 Heat of formation + Delta-G solvation = 3.223642 kcal Electronic energy + Delta-G solvation = -19920.602041 eV Core-core repulsion = 16955.420307 eV Total energy + Delta-G solvation = -2965.181735 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.19950 -37.46754 -35.66207 -32.68424 -32.41505 -30.71907 -30.60384 -28.41856 -26.52462 -25.45550 -22.69304 -22.57313 -20.30324 -19.13058 -18.30853 -17.43417 -16.54869 -16.15613 -15.29427 -14.94852 -14.79161 -14.23084 -14.11994 -13.82239 -13.74422 -13.39918 -13.25580 -12.70254 -12.62264 -12.51533 -12.18087 -11.86876 -11.36655 -11.04232 -11.03742 -10.99336 -10.82334 -10.73291 -10.57281 -10.34116 -10.20744 -10.09411 -9.80279 -9.09722 -9.04658 -8.61750 -8.21949 -6.48426 -6.20476 -3.90672 2.44583 2.80384 3.04870 3.15137 3.24149 3.28638 3.34712 3.67214 4.21686 4.35089 4.63027 4.78585 4.88267 4.97914 5.11386 5.14646 5.25466 5.26998 5.35833 5.38155 5.52850 5.55335 5.58856 5.66200 5.76014 5.87394 5.92277 5.99352 6.01768 6.13624 6.16360 6.23960 6.30998 6.44634 6.45813 6.83176 7.52441 7.59288 7.60773 8.36234 8.57620 9.24842 10.86925 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.022607 B = 0.004437 C = 0.003963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.264089 B = 6309.310239 C = 7064.217232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.207 4.207 3 C 0.219 3.781 4 N -0.616 5.616 5 C 0.539 3.461 6 O -0.505 6.505 7 C -0.153 4.153 8 S -0.059 6.059 9 C -0.535 4.535 10 H 0.071 0.929 11 C 0.074 3.926 12 N -0.868 5.868 13 Si 0.918 3.082 14 H -0.274 1.274 15 H -0.283 1.283 16 H -0.274 1.274 17 C 0.158 3.842 18 C -0.138 4.138 19 C -0.112 4.112 20 C -0.121 4.121 21 C -0.112 4.112 22 C -0.139 4.139 23 H 0.216 0.784 24 H 0.106 0.894 25 H 0.099 0.901 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.269 0.731 29 H 0.079 0.921 30 H 0.090 0.910 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.061 0.939 34 H 0.058 0.942 35 H 0.067 0.933 36 H 0.057 0.943 37 H 0.062 0.938 38 H 0.059 0.941 39 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.063 -8.386 18.043 20.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.208 4.208 3 C 0.096 3.904 4 N -0.350 5.350 5 C 0.327 3.673 6 O -0.378 6.378 7 C -0.304 4.304 8 S 0.168 5.832 9 C -0.684 4.684 10 H 0.089 0.911 11 C -0.135 4.135 12 N -0.503 5.503 13 Si 0.744 3.256 14 H -0.200 1.200 15 H -0.208 1.208 16 H -0.199 1.199 17 C 0.055 3.945 18 C -0.176 4.176 19 C -0.150 4.150 20 C -0.159 4.159 21 C -0.150 4.150 22 C -0.177 4.177 23 H 0.233 0.767 24 H 0.123 0.877 25 H 0.117 0.883 26 H 0.106 0.894 27 H 0.106 0.894 28 H 0.078 0.922 29 H 0.097 0.903 30 H 0.108 0.892 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.076 0.924 35 H 0.085 0.915 36 H 0.075 0.925 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -1.374 -6.543 18.252 19.439 hybrid contribution -1.110 -1.991 -1.360 2.654 sum -2.484 -8.534 16.893 19.088 Atomic orbital electron populations 1.24951 0.95954 0.98740 1.00857 1.23672 0.95074 1.01491 1.00612 1.18438 0.83650 0.84527 1.03762 1.48136 1.67147 1.13284 1.06456 1.20283 0.76196 0.84668 0.86177 1.90635 1.43482 1.19145 1.84568 1.23604 1.04739 1.06563 0.95476 1.85337 1.86740 1.14181 0.96974 1.22822 1.51862 1.01797 0.91870 0.91057 1.24977 0.94649 0.94854 0.99004 1.70013 1.42911 1.09260 1.28139 0.86242 0.78955 0.79026 0.81386 1.19959 1.20804 1.19923 1.21004 0.95319 0.96681 0.81448 1.21969 0.98846 0.99442 0.97333 1.21457 0.96552 1.00648 0.96336 1.21560 0.94915 0.98404 1.01022 1.21467 0.99571 0.97773 0.96182 1.22010 0.95213 1.02796 0.97686 0.76710 0.87663 0.88297 0.89359 0.89366 0.92157 0.90335 0.89180 0.92404 0.92496 0.91983 0.92359 0.91454 0.92457 0.91893 0.92183 0.89043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.19 19.25 29.55 0.57 -1.62 16 2 C -0.21 -2.63 13.55 -37.12 -0.50 -3.13 16 3 C 0.22 2.53 5.66 -6.82 -0.04 2.50 16 4 N -0.62 -8.85 2.38 -169.41 -0.40 -9.25 16 5 C 0.54 10.16 7.11 -10.99 -0.08 10.08 16 6 O -0.50 -11.01 12.07 5.55 0.07 -10.95 16 7 C -0.15 -3.16 4.70 36.01 0.17 -3.00 16 8 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 9 C -0.54 -15.33 9.50 30.94 0.29 -15.03 16 10 H 0.07 1.94 7.80 -52.48 -0.41 1.53 16 11 C 0.07 2.13 5.49 -17.43 -0.10 2.03 16 12 N -0.87 -26.24 13.22 55.49 0.73 -25.51 16 13 Si 0.92 21.49 29.55 -169.99 -5.02 16.47 16 14 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 15 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 16 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 17 C 0.16 2.00 2.54 -67.93 -0.17 1.83 16 18 C -0.14 -1.84 5.13 -26.74 -0.14 -1.98 16 19 C -0.11 -1.19 5.92 -26.73 -0.16 -1.35 16 20 C -0.12 -1.27 5.92 -26.73 -0.16 -1.43 16 21 C -0.11 -1.14 5.93 -26.70 -0.16 -1.30 16 22 C -0.14 -1.76 5.13 -26.70 -0.14 -1.90 16 23 H 0.22 1.81 7.80 -54.08 -0.42 1.39 16 24 H 0.11 1.18 6.43 -51.93 -0.33 0.85 16 25 H 0.10 0.83 7.92 -51.93 -0.41 0.42 16 26 H 0.09 1.67 7.40 -51.91 -0.38 1.29 16 27 H 0.09 1.78 7.98 -51.91 -0.41 1.36 16 28 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 29 H 0.08 0.83 7.79 -51.93 -0.40 0.42 16 30 H 0.09 1.51 6.18 -51.93 -0.32 1.19 16 31 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.09 1.48 6.16 -51.93 -0.32 1.16 16 LS Contribution 333.89 15.07 5.03 5.03 Total: -1.00 -33.23 333.89 -8.35 -41.58 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: -5.94 Total: 0.74 kcal Atomic # 6 Polarization: -13.69 SS G_CDS: -0.61 Total: -14.29 kcal Atomic # 7 Polarization: -35.09 SS G_CDS: 0.33 Total: -34.76 kcal Atomic # 8 Polarization: -11.01 SS G_CDS: 0.07 Total: -10.95 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -33.23 -8.35 -41.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490593909.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.800 kcal (2) G-P(sol) polarization free energy of solvation -33.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.576 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds