Wall clock time and date at job start Tue Mar 31 2020 05:39:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47185 * 129.40393 * 3 2 1 5 5 C 1.36839 * 120.00002 * 274.98878 * 4 3 2 6 6 H 1.07999 * 120.00375 * 188.18560 * 5 4 3 7 7 C 1.39064 * 119.99641 * 8.19158 * 5 4 3 8 8 N 1.31349 * 120.00451 * 14.68312 * 7 5 4 9 9 Si 1.86803 * 119.99962 * 194.67876 * 7 5 4 10 10 H 1.48496 * 109.47323 * 89.99858 * 9 7 5 11 11 H 1.48501 * 109.47145 * 210.00385 * 9 7 5 12 12 H 1.48505 * 109.46967 * 330.00155 * 9 7 5 13 13 C 1.34777 * 120.00103 * 94.98996 * 4 3 2 14 14 O 1.21624 * 120.00034 * 184.95970 * 13 4 3 15 15 C 1.47545 * 119.99922 * 4.96345 * 13 4 3 16 16 C 1.39820 * 119.96736 * 310.01650 * 15 13 4 17 17 C 1.36660 * 120.15870 * 180.02562 * 16 15 13 18 18 C 1.39506 * 119.95312 * 0.30132 * 17 16 15 19 19 C 1.39875 * 120.18854 * 359.41888 * 18 17 16 20 20 C 1.37452 * 119.91381 * 0.57175 * 19 18 17 21 21 C 1.50577 * 119.37681 * 180.28041 * 19 18 17 22 22 C 1.52755 * 109.80529 * 325.69540 * 21 19 18 23 23 C 1.50327 * 110.69949 * 50.37611 * 22 21 19 24 24 C 1.32662 * 121.09150 * 324.19695 * 23 22 21 25 25 H 4.40640 * 5.51517 * 179.97438 * 4 1 2 26 26 H 1.08998 * 109.47678 * 9.40157 * 3 2 1 27 27 H 1.09007 * 109.47389 * 249.39922 * 3 2 1 28 28 H 0.97005 * 120.00778 * 180.02562 * 8 7 5 29 29 H 1.08005 * 119.91887 * 359.97438 * 16 15 13 30 30 H 1.08003 * 120.02054 * 180.02562 * 17 16 15 31 31 H 1.08008 * 120.13720 * 179.69385 * 20 19 18 32 32 H 1.09005 * 109.42014 * 85.79871 * 21 19 18 33 33 H 1.09005 * 109.41725 * 205.59486 * 21 19 18 34 34 H 1.08998 * 109.23085 * 170.69403 * 22 21 19 35 35 H 1.09006 * 109.22925 * 290.10790 * 22 21 19 36 36 H 1.08007 * 119.45055 * 144.22326 * 23 22 21 37 37 H 1.07996 * 120.25455 * 180.45475 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1339 0.8776 -1.0672 5 6 3.2650 0.3968 -2.3416 6 1 3.7467 0.9977 -3.0987 7 6 2.7779 -0.8658 -2.6619 8 7 1.9490 -1.4764 -1.8461 9 14 3.3022 -1.6934 -4.2523 10 1 4.5259 -2.4993 -4.0110 11 1 2.2119 -2.5803 -4.7317 12 1 3.5858 -0.6584 -5.2788 13 6 3.4536 2.1581 -0.7939 14 8 3.7722 2.9109 -1.6945 15 6 3.4173 2.6466 0.5978 16 6 2.2877 2.4174 1.3892 17 6 2.2496 2.8685 2.6786 18 6 3.3376 3.5650 3.2053 19 6 4.4733 3.7928 2.4211 20 6 4.5129 3.3393 1.1241 21 6 5.6397 4.5411 3.0100 22 6 5.1340 5.6075 3.9798 23 6 4.1617 5.0149 4.9614 24 6 3.3179 4.0582 4.5972 25 1 -1.0502 -0.0003 0.0001 26 1 3.0098 -1.0130 -0.1679 27 1 3.0091 0.3624 0.9620 28 1 1.6095 -2.3573 -2.0693 29 1 1.4428 1.8832 0.9802 30 1 1.3760 2.6899 3.2881 31 1 5.3860 3.5175 0.5138 32 1 6.2858 3.8436 3.5431 33 1 6.2054 5.0182 2.2097 34 1 5.9799 6.0293 4.5225 35 1 4.6380 6.3984 3.4171 36 1 4.1497 5.3744 5.9798 37 1 2.6200 3.6472 5.3116 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491119945.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:51 Heat of formation + Delta-G solvation = 76.729908 kcal Electronic energy + Delta-G solvation = -21186.373468 eV Core-core repulsion = 18088.935253 eV Total energy + Delta-G solvation = -3097.438215 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.96053 -38.42425 -35.62569 -35.25538 -32.27856 -32.10437 -31.33275 -29.88247 -28.93441 -26.51894 -25.06303 -23.58887 -22.76331 -21.63695 -19.55117 -18.16821 -17.92744 -16.74296 -16.40301 -15.80463 -15.37601 -14.94741 -14.55617 -14.21865 -14.01586 -13.89081 -13.41821 -13.03333 -12.72194 -12.56876 -12.51504 -12.12776 -11.85791 -11.79992 -11.57099 -11.38168 -11.03069 -10.54167 -10.51140 -10.45666 -10.37751 -9.76526 -9.43760 -9.28592 -8.80672 -8.53848 -8.47619 -8.01161 -7.74725 -6.35718 -3.89256 1.01667 1.76107 2.49325 3.12682 3.21564 3.26636 3.66545 3.85322 4.06183 4.15123 4.27223 4.68995 4.73380 4.90023 5.03512 5.07946 5.14924 5.28665 5.40680 5.42645 5.53154 5.69000 5.70317 5.76069 5.86482 5.92165 6.04176 6.22285 6.30865 6.41394 6.44093 6.56740 6.80580 6.89632 6.92464 6.99000 7.08891 7.28405 7.47976 7.94338 8.36723 8.85059 9.05631 9.27811 9.83467 10.58374 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.028786 B = 0.004712 C = 0.004232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.476777 B = 5940.600693 C = 6614.181976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.274 4.274 2 C -0.092 4.092 3 C 0.224 3.776 4 N -0.428 5.428 5 C -0.306 4.306 6 H 0.109 0.891 7 C 0.028 3.972 8 N -0.865 5.865 9 Si 0.931 3.069 10 H -0.276 1.276 11 H -0.284 1.284 12 H -0.269 1.269 13 C 0.475 3.525 14 O -0.583 6.583 15 C -0.085 4.085 16 C -0.106 4.106 17 C -0.108 4.108 18 C -0.063 4.063 19 C -0.084 4.084 20 C -0.080 4.080 21 C -0.077 4.077 22 C -0.090 4.090 23 C -0.155 4.155 24 C -0.112 4.112 25 H 0.198 0.802 26 H 0.118 0.882 27 H 0.065 0.935 28 H 0.270 0.730 29 H 0.136 0.864 30 H 0.123 0.877 31 H 0.127 0.873 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.112 0.888 37 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.629 5.888 13.226 14.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.293 4.293 2 C -0.094 4.094 3 C 0.102 3.898 4 N -0.144 5.144 5 C -0.433 4.433 6 H 0.127 0.873 7 C -0.175 4.175 8 N -0.504 5.504 9 Si 0.758 3.242 10 H -0.202 1.202 11 H -0.209 1.209 12 H -0.193 1.193 13 C 0.265 3.735 14 O -0.469 6.469 15 C -0.088 4.088 16 C -0.124 4.124 17 C -0.126 4.126 18 C -0.064 4.064 19 C -0.084 4.084 20 C -0.099 4.099 21 C -0.114 4.114 22 C -0.127 4.127 23 C -0.173 4.173 24 C -0.130 4.130 25 H 0.215 0.785 26 H 0.135 0.865 27 H 0.083 0.917 28 H 0.081 0.919 29 H 0.154 0.846 30 H 0.141 0.859 31 H 0.145 0.855 32 H 0.093 0.907 33 H 0.097 0.903 34 H 0.091 0.909 35 H 0.093 0.907 36 H 0.130 0.870 37 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 2.719 6.028 12.725 14.341 hybrid contribution -0.382 -0.706 -0.746 1.096 sum 2.337 5.322 11.979 13.315 Atomic orbital electron populations 1.24225 0.95327 1.04802 1.04983 1.22902 0.94099 0.96293 0.96086 1.18640 0.84537 0.97733 0.88925 1.43679 1.54116 1.07883 1.08718 1.19824 1.36202 1.00045 0.87249 0.87337 1.25349 0.95211 0.97222 0.99720 1.69986 1.27883 1.15442 1.37104 0.85835 0.78156 0.79081 0.81151 1.20204 1.20930 1.19329 1.17887 0.85782 0.82382 0.87486 1.90631 1.54540 1.54877 1.46835 1.20298 0.94831 0.98792 0.94918 1.21452 0.98419 0.98840 0.93735 1.20777 0.97866 0.98330 0.95620 1.18892 0.94260 0.99552 0.93674 1.19779 0.95453 0.99462 0.93745 1.20905 0.98023 0.96966 0.93991 1.20378 0.95446 0.97038 0.98497 1.20401 0.98074 0.98037 0.96151 1.23127 0.97046 0.97900 0.99198 1.21643 0.99376 0.97891 0.94114 0.78464 0.86492 0.91698 0.91852 0.84608 0.85941 0.85529 0.90660 0.90349 0.90858 0.90734 0.86976 0.86313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -5.73 19.04 29.55 0.56 -5.16 16 2 C -0.09 -2.08 8.70 -37.13 -0.32 -2.40 16 3 C 0.22 5.12 4.76 -6.83 -0.03 5.09 16 4 N -0.43 -11.03 2.59 -119.12 -0.31 -11.33 16 5 C -0.31 -8.41 9.46 -15.01 -0.14 -8.55 16 6 H 0.11 3.13 7.26 -52.49 -0.38 2.75 16 7 C 0.03 0.73 5.17 -17.45 -0.09 0.64 16 8 N -0.87 -22.13 8.37 55.50 0.46 -21.66 16 9 Si 0.93 20.37 29.58 -169.99 -5.03 15.34 16 10 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 11 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 12 H -0.27 -5.96 7.11 56.52 0.40 -5.55 16 13 C 0.48 12.09 7.15 -12.46 -0.09 12.00 16 14 O -0.58 -16.76 16.65 5.26 0.09 -16.68 16 15 C -0.08 -1.78 4.89 -104.89 -0.51 -2.29 16 16 C -0.11 -1.98 7.50 -39.56 -0.30 -2.28 16 17 C -0.11 -1.69 9.75 -39.68 -0.39 -2.08 16 18 C -0.06 -0.95 5.78 -104.95 -0.61 -1.55 16 19 C -0.08 -1.30 5.67 -104.36 -0.59 -1.89 16 20 C -0.08 -1.46 9.39 -39.25 -0.37 -1.82 16 21 C -0.08 -0.91 5.95 -28.07 -0.17 -1.07 16 22 C -0.09 -0.91 6.05 -28.19 -0.17 -1.08 16 23 C -0.15 -1.60 10.03 -36.38 -0.36 -1.97 16 24 C -0.11 -1.34 9.90 -37.62 -0.37 -1.71 16 25 H 0.20 3.37 7.80 -54.08 -0.42 2.95 16 26 H 0.12 2.79 6.29 -51.93 -0.33 2.47 16 27 H 0.07 1.32 5.53 -51.93 -0.29 1.04 16 28 H 0.27 6.62 8.31 -40.82 -0.34 6.28 16 29 H 0.14 2.68 4.71 -52.48 -0.25 2.43 16 30 H 0.12 1.59 8.06 -52.48 -0.42 1.17 16 31 H 0.13 2.25 8.06 -52.48 -0.42 1.83 16 32 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.08 0.86 8.07 -51.93 -0.42 0.44 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.11 0.90 8.06 -52.48 -0.42 0.48 16 37 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 LS Contribution 312.34 15.07 4.71 4.71 Total: -1.00 -30.86 312.34 -8.21 -39.07 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: -4.18 Total: 6.70 kcal Atomic # 6 Polarization: -12.18 SS G_CDS: -3.95 Total: -16.13 kcal Atomic # 7 Polarization: -33.15 SS G_CDS: 0.16 Total: -33.00 kcal Atomic # 8 Polarization: -16.76 SS G_CDS: 0.09 Total: -16.68 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.03 Total: 15.34 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -30.86 -8.21 -39.07 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491119945.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.796 kcal (2) G-P(sol) polarization free energy of solvation -30.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.066 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds