Wall clock time and date at job start Tue Mar 31 2020 05:34:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.46740 * 2 1 4 4 N 1.46490 * 109.47501 * 120.00528 * 2 1 3 5 5 C 1.46501 * 120.00212 * 299.99805 * 4 2 1 6 6 C 1.50694 * 109.47269 * 270.00205 * 5 4 2 7 7 H 1.08011 * 120.00105 * 359.97438 * 6 5 4 8 8 C 1.37879 * 120.00255 * 179.97438 * 6 5 4 9 9 N 1.31510 * 119.99679 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 120.00102 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.47405 * 89.99692 * 10 8 6 12 12 H 1.48503 * 109.47147 * 210.00035 * 10 8 6 13 13 H 1.48504 * 109.47228 * 329.99571 * 10 8 6 14 14 C 1.34783 * 120.00252 * 119.99960 * 4 2 1 15 15 O 1.21276 * 119.99950 * 180.02562 * 14 4 2 16 16 C 1.50704 * 119.99432 * 359.97438 * 14 4 2 17 17 C 1.53005 * 109.46526 * 180.02562 * 16 14 4 18 18 C 1.50700 * 109.46909 * 180.02562 * 17 16 14 19 19 C 1.38423 * 122.53613 * 270.00211 * 18 17 16 20 20 C 1.33390 * 114.91977 * 180.02562 * 19 18 17 21 21 S 1.75887 * 109.59565 * 359.75483 * 20 19 18 22 22 C 1.33391 * 122.54338 * 90.02238 * 18 17 16 23 23 H 1.08999 * 109.46996 * 299.99308 * 1 2 3 24 24 H 1.08992 * 109.47702 * 59.99415 * 1 2 3 25 25 H 1.09007 * 109.47157 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46553 * 240.00468 * 2 1 3 27 27 H 1.09001 * 109.46751 * 180.02562 * 3 2 1 28 28 H 1.08997 * 109.47457 * 300.00220 * 3 2 1 29 29 H 1.09003 * 109.47215 * 60.00873 * 3 2 1 30 30 H 1.09004 * 109.46979 * 29.99989 * 5 4 2 31 31 H 1.08999 * 109.47418 * 150.00132 * 5 4 2 32 32 H 0.97000 * 119.99887 * 180.02562 * 9 8 6 33 33 H 1.08994 * 109.46984 * 60.00404 * 16 14 4 34 34 H 1.08994 * 109.47395 * 299.99944 * 16 14 4 35 35 H 1.08994 * 109.47301 * 60.00425 * 17 16 14 36 36 H 1.09003 * 109.46866 * 299.99861 * 17 16 14 37 37 H 1.08001 * 122.53963 * 0.04211 * 19 18 17 38 38 H 1.07998 * 125.20164 * 180.02562 * 20 19 18 39 39 H 1.08002 * 125.19887 * 359.95301 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0184 -0.6907 1.1960 5 6 1.6646 -0.1903 2.5267 6 6 2.7033 0.8016 2.9829 7 1 3.5433 1.0356 2.3456 8 6 2.5814 1.4105 4.2140 9 7 1.5583 1.1259 4.9898 10 14 3.8685 2.6405 4.7792 11 1 3.4752 4.0044 4.3428 12 1 3.9707 2.6048 6.2603 13 1 5.1832 2.2902 4.1839 14 6 2.7933 -1.7865 1.0722 15 8 3.1972 -2.3585 2.0624 16 6 3.1568 -2.3015 -0.2966 17 6 4.0361 -3.5458 -0.1563 18 6 4.4001 -4.0605 -1.5251 19 6 3.6269 -4.9882 -2.2016 20 6 4.0909 -5.3382 -3.4022 21 16 5.5809 -4.4651 -3.7362 22 6 5.4920 -3.6570 -2.1765 23 1 -0.3633 0.5137 0.8900 24 1 -0.3634 0.5139 -0.8898 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8932 -0.5138 -0.8901 27 1 3.1299 1.4425 -0.0005 28 1 1.6765 1.9564 -0.8899 29 1 1.6767 1.9563 0.8901 30 1 0.6906 0.2972 2.4844 31 1 1.6241 -1.0228 3.2290 32 1 1.4723 1.5545 5.8557 33 1 3.7015 -1.5308 -0.8419 34 1 2.2483 -2.5586 -0.8412 35 1 3.4910 -4.3163 0.3888 36 1 4.9446 -3.2891 0.3884 37 1 2.7167 -5.3975 -1.7887 38 1 3.6211 -6.0458 -4.0692 39 1 6.2093 -2.9402 -1.8049 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000522583040.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:45 Heat of formation + Delta-G solvation = -16.563187 kcal Electronic energy + Delta-G solvation = -19854.873573 eV Core-core repulsion = 16888.833817 eV Total energy + Delta-G solvation = -2966.039756 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.37188 -38.20882 -35.94087 -33.00785 -32.42309 -30.78811 -29.30823 -27.44418 -26.70714 -25.08316 -23.02046 -22.02326 -21.07655 -18.75524 -17.88684 -17.67723 -16.57265 -16.42593 -15.33317 -15.10861 -14.77263 -14.29243 -13.55045 -13.48451 -13.28564 -13.15693 -12.93448 -12.65049 -12.32457 -11.98723 -11.97800 -11.78180 -11.60546 -11.50881 -11.11945 -10.92751 -10.87585 -10.81020 -10.68645 -10.52439 -10.33962 -9.98300 -9.51246 -8.93685 -8.81312 -8.41475 -8.38895 -7.60090 -6.00803 -4.03871 0.92708 1.58157 1.89771 2.63392 3.31024 3.38072 3.41289 3.50353 3.98853 4.47220 4.80802 4.94046 5.19955 5.24744 5.27835 5.33416 5.36565 5.51644 5.54029 5.60328 5.70622 5.80185 5.89294 6.02607 6.04344 6.18841 6.24367 6.30561 6.38792 6.45465 6.53498 6.62352 6.97975 7.15860 7.51091 7.62136 7.96447 8.29176 8.50562 8.95307 9.16126 9.60242 11.07354 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.023422 B = 0.003869 C = 0.003691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.181835 B = 7236.009136 C = 7583.466158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.133 3.867 3 C -0.157 4.157 4 N -0.594 5.594 5 C 0.245 3.755 6 C -0.518 4.518 7 H 0.058 0.942 8 C 0.060 3.940 9 N -0.896 5.896 10 Si 0.894 3.106 11 H -0.281 1.281 12 H -0.286 1.286 13 H -0.275 1.275 14 C 0.503 3.497 15 O -0.544 6.544 16 C -0.133 4.133 17 C -0.046 4.046 18 C -0.094 4.094 19 C -0.127 4.127 20 C -0.214 4.214 21 S 0.075 5.925 22 C -0.209 4.209 23 H 0.068 0.932 24 H 0.058 0.942 25 H 0.051 0.949 26 H 0.075 0.925 27 H 0.053 0.947 28 H 0.048 0.952 29 H 0.080 0.920 30 H 0.033 0.967 31 H 0.041 0.959 32 H 0.262 0.738 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.141 0.859 38 H 0.162 0.838 39 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.250 -8.124 -18.224 20.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.028 3.972 3 C -0.215 4.215 4 N -0.325 5.325 5 C 0.126 3.874 6 C -0.557 4.557 7 H 0.076 0.924 8 C -0.142 4.142 9 N -0.535 5.535 10 Si 0.722 3.278 11 H -0.207 1.207 12 H -0.212 1.212 13 H -0.200 1.200 14 C 0.290 3.710 15 O -0.422 6.422 16 C -0.173 4.173 17 C -0.086 4.086 18 C -0.106 4.106 19 C -0.157 4.157 20 C -0.349 4.349 21 S 0.338 5.662 22 C -0.344 4.344 23 H 0.087 0.913 24 H 0.077 0.923 25 H 0.070 0.930 26 H 0.093 0.907 27 H 0.072 0.928 28 H 0.067 0.933 29 H 0.099 0.901 30 H 0.051 0.949 31 H 0.059 0.941 32 H 0.072 0.928 33 H 0.104 0.896 34 H 0.103 0.897 35 H 0.099 0.901 36 H 0.099 0.901 37 H 0.159 0.841 38 H 0.179 0.821 39 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 3.391 -8.337 -18.744 20.793 hybrid contribution -0.332 0.797 1.458 1.695 sum 3.059 -7.540 -17.286 19.105 Atomic orbital electron populations 1.22156 0.95697 1.01732 1.02393 1.20988 0.94026 0.94103 0.88057 1.22138 1.01316 0.95790 1.02243 1.48335 1.49182 1.26488 1.08542 1.19220 0.95821 0.94940 0.77386 1.21448 1.08869 1.23306 1.02043 0.92424 1.24925 0.95750 0.97147 0.96368 1.69931 1.29551 1.43313 1.10732 0.86558 0.82059 0.81263 0.77911 1.20724 1.21176 1.19964 1.20352 0.79136 0.80941 0.90560 1.90664 1.53455 1.58234 1.39836 1.21663 1.00918 0.98190 0.96563 1.20078 1.00752 0.96784 0.90989 1.19098 0.94869 0.98272 0.98396 1.20181 1.01661 0.99253 0.94628 1.25557 1.00686 1.07086 1.01602 1.84198 1.24188 1.39328 1.18473 1.25511 1.03617 1.07358 0.97927 0.91335 0.92346 0.92959 0.90685 0.92802 0.93339 0.90096 0.94886 0.94132 0.92838 0.89589 0.89681 0.90123 0.90147 0.84142 0.82053 0.81832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.37 9.17 37.16 0.34 -2.03 16 2 C 0.13 2.16 3.17 -67.94 -0.22 1.94 16 3 C -0.16 -2.59 8.47 37.16 0.31 -2.27 16 4 N -0.59 -12.35 2.39 -167.48 -0.40 -12.75 16 5 C 0.25 6.32 4.59 -5.20 -0.02 6.30 16 6 C -0.52 -14.38 7.83 -34.44 -0.27 -14.65 16 7 H 0.06 1.60 7.63 -52.48 -0.40 1.20 16 8 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 9 N -0.90 -26.52 13.29 55.43 0.74 -25.78 16 10 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 12 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 13 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 14 C 0.50 10.30 7.67 -10.98 -0.08 10.22 16 15 O -0.54 -13.53 15.56 5.56 0.09 -13.44 16 16 C -0.13 -1.95 3.99 -27.88 -0.11 -2.06 16 17 C -0.05 -0.64 4.76 -27.88 -0.13 -0.77 16 18 C -0.09 -1.12 5.06 -106.25 -0.54 -1.66 16 19 C -0.13 -1.35 9.98 -41.21 -0.41 -1.76 16 20 C -0.21 -2.02 11.23 29.04 0.33 -1.69 16 21 S 0.07 0.72 23.34 -107.50 -2.51 -1.79 16 22 C -0.21 -2.32 10.98 29.04 0.32 -2.00 16 23 H 0.07 1.15 6.66 -51.93 -0.35 0.80 16 24 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.08 1.02 5.77 -51.93 -0.30 0.72 16 27 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.08 1.58 6.92 -51.93 -0.36 1.22 16 30 H 0.03 0.86 6.43 -51.93 -0.33 0.53 16 31 H 0.04 1.20 7.42 -51.93 -0.39 0.81 16 32 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 33 H 0.09 1.16 7.79 -51.93 -0.40 0.76 16 34 H 0.08 1.08 7.79 -51.93 -0.40 0.68 16 35 H 0.08 1.17 8.09 -51.93 -0.42 0.75 16 36 H 0.08 1.21 8.08 -51.93 -0.42 0.79 16 37 H 0.14 1.31 8.06 -52.49 -0.42 0.89 16 38 H 0.16 1.13 8.06 -52.49 -0.42 0.71 16 39 H 0.16 1.65 8.06 -52.49 -0.42 1.23 16 LS Contribution 335.41 15.07 5.05 5.05 Total: -1.00 -31.97 335.41 -8.50 -40.47 By element: Atomic # 1 Polarization: 6.14 SS G_CDS: -5.87 Total: 0.27 kcal Atomic # 6 Polarization: -8.26 SS G_CDS: -0.58 Total: -8.84 kcal Atomic # 7 Polarization: -38.87 SS G_CDS: 0.34 Total: -38.53 kcal Atomic # 8 Polarization: -13.53 SS G_CDS: 0.09 Total: -13.44 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Atomic # 16 Polarization: 0.72 SS G_CDS: -2.51 Total: -1.79 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -31.97 -8.50 -40.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000522583040.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.908 kcal (2) G-P(sol) polarization free energy of solvation -31.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds