Wall clock time and date at job start Tue Mar 31 2020 05:26:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46911 * 2 1 4 4 H 1.08998 * 109.47630 * 305.00127 * 3 2 1 5 5 C 1.50697 * 109.46962 * 185.00181 * 3 2 1 6 6 H 1.08004 * 120.00027 * 240.00711 * 5 3 2 7 7 C 1.37875 * 120.00151 * 59.72125 * 5 3 2 8 8 N 1.31518 * 119.99994 * 0.28370 * 7 5 3 9 9 Si 1.86798 * 120.00416 * 180.27487 * 7 5 3 10 10 H 1.48500 * 109.46997 * 90.00382 * 9 7 5 11 11 H 1.48502 * 109.47379 * 210.00331 * 9 7 5 12 12 H 1.48497 * 109.47198 * 330.00597 * 9 7 5 13 13 N 1.46496 * 109.47152 * 65.00304 * 3 2 1 14 14 C 1.34781 * 120.00238 * 274.99715 * 13 3 2 15 15 O 1.21694 * 119.99648 * 354.70873 * 14 13 3 16 16 C 1.46674 * 120.00330 * 174.70588 * 14 13 3 17 17 C 1.37872 * 126.22911 * 4.99287 * 16 14 13 18 18 C 1.39840 * 107.08139 * 179.88459 * 17 16 14 19 19 N 1.48014 * 126.06965 * 180.11523 * 18 17 16 20 20 O 1.21796 * 120.00563 * 180.29483 * 19 18 17 21 21 O 1.21809 * 119.99722 * 0.29425 * 19 18 17 22 22 C 1.35453 * 107.86689 * 0.38143 * 18 17 16 23 23 N 1.35536 * 108.86998 * 359.76564 * 22 18 17 24 24 C 1.46491 * 125.67958 * 179.97438 * 23 22 18 25 25 H 1.08998 * 109.47239 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47257 * 300.00257 * 1 2 3 27 27 H 1.08996 * 109.47394 * 59.99438 * 1 2 3 28 28 H 1.09002 * 109.46503 * 240.00269 * 2 1 3 29 29 H 1.08997 * 109.46923 * 120.00314 * 2 1 3 30 30 H 0.96999 * 120.00261 * 179.97438 * 8 7 5 31 31 H 0.97001 * 120.00414 * 94.99757 * 13 3 2 32 32 H 1.08000 * 126.46117 * 0.02562 * 17 16 14 33 33 H 1.07996 * 125.56333 * 179.73774 * 22 18 17 34 34 H 1.09005 * 109.46749 * 274.88653 * 24 23 22 35 35 H 1.09005 * 109.47192 * 34.88350 * 24 23 22 36 36 H 1.08999 * 109.47435 * 154.88751 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8888 0.6523 7 6 4.1435 0.8734 -1.2252 8 7 3.4064 0.3321 -2.1704 9 14 6.0054 0.8688 -1.3752 10 1 6.5493 -0.3632 -0.7493 11 1 6.3866 0.9049 -2.8100 12 1 6.5605 2.0609 -0.6854 13 7 1.6525 2.0975 1.2518 14 6 0.4352 2.6644 1.3671 15 8 -0.3050 2.7175 0.4026 16 6 0.0025 3.2173 2.6549 17 6 0.7666 3.3132 3.7985 18 6 -0.0365 3.9007 4.7810 19 7 0.3686 4.2017 6.1725 20 8 -0.4260 4.7126 6.9412 21 8 1.4968 3.9383 6.5488 22 6 -1.2528 4.1401 4.2351 23 7 -1.2422 3.7293 2.9436 24 6 -2.3681 3.8154 2.0103 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 3.8296 -0.0693 -2.9455 31 1 2.2720 2.1231 1.9978 32 1 1.7928 2.9967 3.9131 33 1 -2.0939 4.5852 4.7459 34 1 -3.0104 2.9435 2.1347 35 1 -2.9405 4.7204 2.2140 36 1 -1.9912 3.8461 0.9881 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000545879664.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:03 Heat of formation + Delta-G solvation = 1.917187 kcal Electronic energy + Delta-G solvation = -22015.763118 eV Core-core repulsion = 18504.231517 eV Total energy + Delta-G solvation = -3511.531601 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.41311 -41.37627 -38.88646 -36.39062 -35.35152 -33.69417 -32.53852 -31.35898 -29.90350 -27.95553 -27.06003 -25.39802 -23.61569 -22.50291 -21.26316 -20.22829 -19.57680 -18.81828 -18.40086 -17.44472 -16.98087 -16.42299 -15.93862 -15.65621 -15.35654 -14.62416 -14.46936 -14.00000 -13.37051 -13.17960 -12.84360 -12.80547 -12.66403 -12.26774 -11.68087 -11.49498 -11.38546 -11.16907 -11.08760 -11.04563 -10.92227 -10.44912 -10.34325 -9.83176 -9.63185 -9.49779 -9.19296 -8.91157 -8.63253 -8.08277 -6.23190 -4.33155 0.32231 1.18305 1.38051 2.21270 2.35061 3.19721 3.27233 3.29276 3.52166 3.74443 4.24738 4.27342 4.41633 4.63018 4.89577 4.93941 5.09198 5.10204 5.39519 5.49293 5.76731 6.19434 6.21108 6.24989 6.41497 6.45916 6.54924 6.85310 6.99024 7.11679 7.19161 7.44019 7.57406 7.73245 7.79665 8.02111 8.37345 8.57685 8.80972 9.34270 10.82172 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.020011 B = 0.004573 C = 0.003916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.873287 B = 6121.212890 C = 7148.816410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.130 4.130 3 C 0.271 3.729 4 H 0.055 0.945 5 C -0.538 4.538 6 H 0.064 0.936 7 C 0.069 3.931 8 N -0.882 5.882 9 Si 0.903 3.097 10 H -0.278 1.278 11 H -0.285 1.285 12 H -0.273 1.273 13 N -0.686 5.686 14 C 0.574 3.426 15 O -0.547 6.547 16 C -0.010 4.010 17 C -0.096 4.096 18 C -0.129 4.129 19 N 0.067 4.933 20 O -0.184 6.184 21 O -0.165 6.165 22 C 0.097 3.903 23 N -0.389 5.389 24 C 0.056 3.944 25 H 0.027 0.973 26 H 0.032 0.968 27 H 0.050 0.950 28 H 0.104 0.896 29 H 0.034 0.966 30 H 0.266 0.734 31 H 0.393 0.607 32 H 0.171 0.829 33 H 0.196 0.804 34 H 0.087 0.913 35 H 0.090 0.910 36 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.836 5.225 8.892 14.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.168 4.168 3 C 0.170 3.830 4 H 0.073 0.927 5 C -0.576 4.576 6 H 0.082 0.918 7 C -0.135 4.135 8 N -0.519 5.519 9 Si 0.730 3.270 10 H -0.204 1.204 11 H -0.210 1.210 12 H -0.197 1.197 13 N -0.332 5.332 14 C 0.358 3.642 15 O -0.428 6.428 16 C -0.124 4.124 17 C -0.121 4.121 18 C -0.221 4.221 19 N 0.583 4.417 20 O -0.394 6.394 21 O -0.380 6.380 22 C -0.046 4.046 23 N -0.061 5.061 24 C -0.084 4.084 25 H 0.046 0.954 26 H 0.051 0.949 27 H 0.070 0.930 28 H 0.122 0.878 29 H 0.053 0.947 30 H 0.076 0.924 31 H 0.227 0.773 32 H 0.189 0.811 33 H 0.212 0.788 34 H 0.105 0.895 35 H 0.108 0.892 36 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -10.790 4.985 7.035 13.812 hybrid contribution 1.299 0.046 0.764 1.508 sum -9.491 5.030 7.799 13.274 Atomic orbital electron populations 1.21825 0.98565 0.98447 1.00724 1.21973 0.92447 0.99620 1.02794 1.18934 0.94700 0.89114 0.80223 0.92748 1.21193 0.90331 1.39349 1.06710 0.91832 1.24866 0.98821 0.94572 0.95230 1.69876 1.35299 1.37300 1.09443 0.86420 0.84526 0.78614 0.77440 1.20426 1.21033 1.19741 1.46354 1.13318 1.54289 1.19268 1.16715 0.83614 0.79062 0.84777 1.90757 1.54143 1.59401 1.38508 1.20848 0.85523 1.08816 0.97193 1.21230 1.00785 1.00801 0.89287 1.20096 0.97849 1.19656 0.84474 1.42616 1.00127 0.97387 1.01607 1.94506 1.49185 1.44538 1.51169 1.94555 1.05857 1.56602 1.80956 1.21650 0.98191 1.00439 0.84349 1.44095 1.11250 1.41635 1.09088 1.22664 0.86665 1.03718 0.95336 0.95426 0.94874 0.93041 0.87827 0.94683 0.92425 0.77329 0.81124 0.78756 0.89474 0.89174 0.85783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.81 8.58 37.16 0.32 -2.49 16 2 C -0.13 -2.93 5.45 -26.73 -0.15 -3.07 16 3 C 0.27 6.32 2.25 -69.09 -0.16 6.16 16 4 H 0.05 1.46 7.51 -51.93 -0.39 1.07 16 5 C -0.54 -13.41 8.73 -34.44 -0.30 -13.71 16 6 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 7 C 0.07 1.76 5.29 -17.82 -0.09 1.66 16 8 N -0.88 -23.52 11.28 55.43 0.63 -22.89 16 9 Si 0.90 19.89 29.54 -169.99 -5.02 14.87 16 10 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 11 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 12 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 13 N -0.69 -13.06 5.01 -56.25 -0.28 -13.34 16 14 C 0.57 10.25 6.14 -12.85 -0.08 10.17 16 15 O -0.55 -10.90 12.13 5.19 0.06 -10.84 16 16 C -0.01 -0.15 6.88 -81.98 -0.56 -0.71 16 17 C -0.10 -1.31 10.08 -39.12 -0.39 -1.71 16 18 C -0.13 -1.70 7.11 -80.34 -0.57 -2.28 16 19 N 0.07 0.99 4.45 33.77 0.15 1.14 16 20 O -0.18 -2.70 19.02 -29.46 -0.56 -3.26 16 21 O -0.16 -2.62 19.05 -29.46 -0.56 -3.19 16 22 C 0.10 1.03 11.06 -16.91 -0.19 0.84 16 23 N -0.39 -4.50 3.16 -120.24 -0.38 -4.88 16 24 C 0.06 0.49 10.77 59.84 0.64 1.14 16 25 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.03 0.64 5.76 -51.93 -0.30 0.34 16 27 H 0.05 1.10 7.92 -51.93 -0.41 0.69 16 28 H 0.10 2.61 5.94 -51.93 -0.31 2.31 16 29 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 31 H 0.39 6.60 7.44 -40.82 -0.30 6.29 16 32 H 0.17 2.12 7.45 -52.49 -0.39 1.73 16 33 H 0.20 1.33 8.06 -52.49 -0.42 0.91 16 34 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.12 1.41 5.96 -51.93 -0.31 1.10 16 LS Contribution 311.96 15.07 4.70 4.70 Total: -1.00 -29.27 311.96 -6.86 -36.13 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: -4.07 Total: 5.57 kcal Atomic # 6 Polarization: -2.48 SS G_CDS: -1.53 Total: -4.00 kcal Atomic # 7 Polarization: -40.09 SS G_CDS: 0.11 Total: -39.98 kcal Atomic # 8 Polarization: -16.23 SS G_CDS: -1.06 Total: -17.29 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.02 Total: 14.87 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -29.27 -6.86 -36.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000545879664.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.045 kcal (2) G-P(sol) polarization free energy of solvation -29.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.128 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds