Wall clock time and date at job start Tue Mar 31 2020 05:26:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52990 * 109.46989 * 2 1 4 4 H 1.08998 * 109.47798 * 55.00311 * 3 2 1 5 5 C 1.50705 * 109.47177 * 174.99984 * 3 2 1 6 6 H 1.08002 * 119.99639 * 119.99413 * 5 3 2 7 7 C 1.37878 * 119.99951 * 300.00231 * 5 3 2 8 8 N 1.31510 * 119.99924 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99842 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47112 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.46647 * 120.00175 * 9 7 5 12 12 H 1.48496 * 109.47036 * 239.99932 * 9 7 5 13 13 N 1.46503 * 109.47311 * 294.99692 * 3 2 1 14 14 C 1.34780 * 119.99541 * 85.00616 * 13 3 2 15 15 O 1.21696 * 120.00185 * 5.29326 * 14 13 3 16 16 C 1.46678 * 119.99831 * 185.30451 * 14 13 3 17 17 C 1.37871 * 126.23348 * 354.90839 * 16 14 13 18 18 C 1.39830 * 107.08807 * 179.97438 * 17 16 14 19 19 N 1.48011 * 126.07110 * 180.02562 * 18 17 16 20 20 O 1.21799 * 120.00076 * 0.02562 * 19 18 17 21 21 O 1.21807 * 119.99925 * 179.72224 * 19 18 17 22 22 C 1.35456 * 107.86528 * 0.26208 * 18 17 16 23 23 N 1.35539 * 108.86854 * 359.57335 * 22 18 17 24 24 C 1.46495 * 125.67778 * 180.13982 * 23 22 18 25 25 H 1.09002 * 109.47680 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47153 * 299.99683 * 1 2 3 27 27 H 1.09004 * 109.47368 * 60.00096 * 1 2 3 28 28 H 1.09001 * 109.46551 * 239.99866 * 2 1 3 29 29 H 1.08995 * 109.47120 * 120.00449 * 2 1 3 30 30 H 0.96996 * 119.99641 * 180.02562 * 8 7 5 31 31 H 0.96999 * 120.00704 * 264.99841 * 13 3 2 32 32 H 1.07999 * 126.45904 * 0.02562 * 17 16 14 33 33 H 1.07993 * 125.56795 * 179.73579 * 22 18 17 34 34 H 1.09008 * 109.47188 * 275.21512 * 24 23 22 35 35 H 1.09002 * 109.47704 * 35.21576 * 24 23 22 36 36 H 1.09002 * 109.47293 * 155.21891 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1471 1.8888 -0.6524 7 6 4.1433 0.8783 1.2280 8 7 3.4062 0.3365 2.1728 9 14 6.0050 0.8800 1.3811 10 1 6.5987 1.5453 0.1936 11 1 6.3999 1.6156 2.6092 12 1 6.4962 -0.5190 1.4626 13 7 1.6524 2.0974 -1.2518 14 6 0.4351 2.6644 -1.3669 15 8 -0.3050 2.7176 -0.4024 16 6 0.0023 3.2171 -2.6548 17 6 0.7668 3.3146 -3.7980 18 6 -0.0375 3.8983 -4.7817 19 7 0.3666 4.1966 -6.1739 20 8 1.4932 3.9290 -6.5517 21 8 -0.4292 4.7046 -6.9435 22 6 -1.2506 4.1472 -4.2327 23 7 -1.2412 3.7325 -2.9424 24 6 -2.3653 3.8239 -2.0074 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8932 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 3.8293 -0.0613 2.9497 31 1 2.2719 2.1232 -1.9978 32 1 1.7933 2.9989 -3.9125 33 1 -2.0892 4.5995 -4.7411 34 1 -2.3755 4.8119 -1.5469 35 1 -3.2996 3.6643 -2.5456 36 1 -2.2572 3.0637 -1.2338 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000545879668.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:05 Heat of formation + Delta-G solvation = 1.740604 kcal Electronic energy + Delta-G solvation = -22015.864142 eV Core-core repulsion = 18504.324884 eV Total energy + Delta-G solvation = -3511.539258 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.41368 -41.37634 -38.88408 -36.39083 -35.34686 -33.69712 -32.53879 -31.36228 -29.90367 -27.96148 -27.05828 -25.39871 -23.61811 -22.50293 -21.26439 -20.23079 -19.56899 -18.82063 -18.39992 -17.44531 -16.98137 -16.42759 -15.95010 -15.64872 -15.36563 -14.59032 -14.48539 -14.01570 -13.33555 -13.17092 -12.86900 -12.79158 -12.67734 -12.27681 -11.68453 -11.49536 -11.39404 -11.17221 -11.06263 -11.04578 -10.94918 -10.44394 -10.34330 -9.83375 -9.62924 -9.50153 -9.19022 -8.91051 -8.63602 -8.08217 -6.23471 -4.33249 0.32164 1.18412 1.38015 2.21218 2.34945 3.18751 3.27437 3.30116 3.52178 3.74446 4.24507 4.27257 4.41285 4.62683 4.89813 4.94433 5.09131 5.10173 5.38794 5.48297 5.76651 6.19080 6.20689 6.24427 6.41291 6.45493 6.54824 6.84978 6.98708 7.11602 7.18953 7.43997 7.57567 7.73202 7.79634 8.01918 8.37490 8.57879 8.81131 9.34254 10.82011 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.020010 B = 0.004572 C = 0.003917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.977402 B = 6122.756781 C = 7147.181722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.129 4.129 3 C 0.271 3.729 4 H 0.055 0.945 5 C -0.537 4.537 6 H 0.064 0.936 7 C 0.068 3.932 8 N -0.882 5.882 9 Si 0.902 3.098 10 H -0.271 1.271 11 H -0.282 1.282 12 H -0.282 1.282 13 N -0.686 5.686 14 C 0.574 3.426 15 O -0.547 6.547 16 C -0.010 4.010 17 C -0.097 4.097 18 C -0.128 4.128 19 N 0.067 4.933 20 O -0.164 6.164 21 O -0.184 6.184 22 C 0.097 3.903 23 N -0.389 5.389 24 C 0.059 3.941 25 H 0.027 0.973 26 H 0.051 0.949 27 H 0.032 0.968 28 H 0.035 0.965 29 H 0.103 0.897 30 H 0.265 0.735 31 H 0.393 0.607 32 H 0.171 0.829 33 H 0.196 0.804 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.886 5.134 -8.955 14.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.168 4.168 3 C 0.170 3.830 4 H 0.072 0.928 5 C -0.575 4.575 6 H 0.082 0.918 7 C -0.135 4.135 8 N -0.519 5.519 9 Si 0.730 3.270 10 H -0.196 1.196 11 H -0.208 1.208 12 H -0.208 1.208 13 N -0.333 5.333 14 C 0.358 3.642 15 O -0.428 6.428 16 C -0.124 4.124 17 C -0.121 4.121 18 C -0.221 4.221 19 N 0.583 4.417 20 O -0.380 6.380 21 O -0.394 6.394 22 C -0.046 4.046 23 N -0.061 5.061 24 C -0.081 4.081 25 H 0.046 0.954 26 H 0.070 0.930 27 H 0.051 0.949 28 H 0.053 0.947 29 H 0.122 0.878 30 H 0.075 0.925 31 H 0.227 0.773 32 H 0.189 0.811 33 H 0.212 0.788 34 H 0.106 0.894 35 H 0.108 0.892 36 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -10.839 4.897 -7.103 13.854 hybrid contribution 1.316 0.104 -0.722 1.505 sum -9.522 5.001 -7.825 13.301 Atomic orbital electron populations 1.21828 0.98586 0.98460 1.00698 1.21965 0.92437 0.99615 1.02790 1.18939 0.94724 0.89116 0.80231 0.92752 1.21234 0.90341 1.39384 1.06562 0.91776 1.24868 0.98822 0.94571 0.95248 1.69884 1.35220 1.37449 1.09354 0.86370 0.84530 0.77882 0.78242 1.19592 1.20837 1.20781 1.46353 1.13313 1.54318 1.19269 1.16718 0.83647 0.79076 0.84776 1.90773 1.54039 1.59562 1.38404 1.20862 0.85549 1.08704 0.97246 1.21227 1.00725 1.00918 0.89253 1.20095 0.97931 1.19625 0.84405 1.42616 1.00115 0.97373 1.01633 1.94553 1.06050 1.56390 1.80959 1.94509 1.49014 1.44724 1.51163 1.21646 0.98326 1.00223 0.84441 1.44096 1.11405 1.41396 1.09197 1.22613 0.85643 1.06400 0.93399 0.95408 0.93033 0.94900 0.94667 0.87845 0.92482 0.77329 0.81125 0.78751 0.89354 0.89213 0.86131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.80 8.58 37.16 0.32 -2.48 16 2 C -0.13 -2.91 5.45 -26.74 -0.15 -3.06 16 3 C 0.27 6.31 2.25 -69.08 -0.16 6.15 16 4 H 0.05 1.46 7.51 -51.93 -0.39 1.07 16 5 C -0.54 -13.40 8.73 -34.44 -0.30 -13.70 16 6 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 7 C 0.07 1.75 5.29 -17.82 -0.09 1.66 16 8 N -0.88 -23.52 11.29 55.43 0.63 -22.89 16 9 Si 0.90 19.90 29.54 -169.99 -5.02 14.87 16 10 H -0.27 -5.90 7.11 56.52 0.40 -5.49 16 11 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 12 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 13 N -0.69 -13.07 5.01 -56.24 -0.28 -13.35 16 14 C 0.57 10.24 6.14 -12.85 -0.08 10.16 16 15 O -0.55 -10.92 12.20 5.19 0.06 -10.85 16 16 C -0.01 -0.15 6.89 -81.98 -0.56 -0.71 16 17 C -0.10 -1.32 10.08 -39.12 -0.39 -1.71 16 18 C -0.13 -1.70 7.11 -80.35 -0.57 -2.27 16 19 N 0.07 0.99 4.45 33.77 0.15 1.14 16 20 O -0.16 -2.62 19.05 -29.46 -0.56 -3.18 16 21 O -0.18 -2.70 19.02 -29.46 -0.56 -3.26 16 22 C 0.10 1.02 11.06 -16.91 -0.19 0.84 16 23 N -0.39 -4.50 3.16 -120.23 -0.38 -4.88 16 24 C 0.06 0.52 10.67 59.84 0.64 1.16 16 25 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.05 1.10 7.92 -51.93 -0.41 0.69 16 27 H 0.03 0.63 5.76 -51.93 -0.30 0.33 16 28 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.10 2.61 5.95 -51.93 -0.31 2.30 16 30 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 31 H 0.39 6.61 7.44 -40.82 -0.30 6.30 16 32 H 0.17 2.12 7.45 -52.49 -0.39 1.73 16 33 H 0.20 1.33 8.06 -52.49 -0.42 0.91 16 34 H 0.09 0.68 8.14 -51.92 -0.42 0.25 16 35 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.12 1.36 6.16 -51.93 -0.32 1.04 16 LS Contribution 312.15 15.07 4.70 4.70 Total: -1.00 -29.32 312.15 -6.87 -36.19 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -4.08 Total: 5.47 kcal Atomic # 6 Polarization: -2.44 SS G_CDS: -1.53 Total: -3.97 kcal Atomic # 7 Polarization: -40.10 SS G_CDS: 0.11 Total: -39.98 kcal Atomic # 8 Polarization: -16.24 SS G_CDS: -1.06 Total: -17.29 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -5.02 Total: 14.87 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -29.32 -6.87 -36.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000545879668.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.935 kcal (2) G-P(sol) polarization free energy of solvation -29.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.195 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds