Wall clock time and date at job start Tue Mar 31 2020 05:26:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52990 * 109.46989 * 2 1 4 4 H 1.08998 * 109.47798 * 55.00311 * 3 2 1 5 5 C 1.50705 * 109.47177 * 174.99984 * 3 2 1 6 6 H 1.08002 * 119.99639 * 119.99413 * 5 3 2 7 7 C 1.37878 * 119.99951 * 300.00231 * 5 3 2 8 8 N 1.31510 * 119.99924 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99842 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47112 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.46647 * 120.00175 * 9 7 5 12 12 H 1.48496 * 109.47036 * 239.99932 * 9 7 5 13 13 N 1.46503 * 109.47311 * 294.99692 * 3 2 1 14 14 C 1.34780 * 119.99541 * 85.00616 * 13 3 2 15 15 O 1.21696 * 120.00185 * 5.29326 * 14 13 3 16 16 C 1.46678 * 119.99831 * 185.30451 * 14 13 3 17 17 C 1.37871 * 126.23348 * 354.90839 * 16 14 13 18 18 C 1.39830 * 107.08807 * 179.97438 * 17 16 14 19 19 N 1.48011 * 126.07110 * 180.02562 * 18 17 16 20 20 O 1.21799 * 120.00076 * 0.02562 * 19 18 17 21 21 O 1.21807 * 119.99925 * 179.72224 * 19 18 17 22 22 C 1.35456 * 107.86528 * 0.26208 * 18 17 16 23 23 N 1.35539 * 108.86854 * 359.57335 * 22 18 17 24 24 C 1.46495 * 125.67778 * 180.13982 * 23 22 18 25 25 H 1.09002 * 109.47680 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47153 * 299.99683 * 1 2 3 27 27 H 1.09004 * 109.47368 * 60.00096 * 1 2 3 28 28 H 1.09001 * 109.46551 * 239.99866 * 2 1 3 29 29 H 1.08995 * 109.47120 * 120.00449 * 2 1 3 30 30 H 0.96996 * 119.99641 * 180.02562 * 8 7 5 31 31 H 0.96999 * 120.00704 * 264.99841 * 13 3 2 32 32 H 1.07999 * 126.45904 * 0.02562 * 17 16 14 33 33 H 1.07993 * 125.56795 * 179.73579 * 22 18 17 34 34 H 1.09008 * 109.47188 * 275.21512 * 24 23 22 35 35 H 1.09002 * 109.47704 * 35.21576 * 24 23 22 36 36 H 1.09002 * 109.47293 * 155.21891 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1471 1.8888 -0.6524 7 6 4.1433 0.8783 1.2280 8 7 3.4062 0.3365 2.1728 9 14 6.0050 0.8800 1.3811 10 1 6.5987 1.5453 0.1936 11 1 6.3999 1.6156 2.6092 12 1 6.4962 -0.5190 1.4626 13 7 1.6524 2.0974 -1.2518 14 6 0.4351 2.6644 -1.3669 15 8 -0.3050 2.7176 -0.4024 16 6 0.0023 3.2171 -2.6548 17 6 0.7668 3.3146 -3.7980 18 6 -0.0375 3.8983 -4.7817 19 7 0.3666 4.1966 -6.1739 20 8 1.4932 3.9290 -6.5517 21 8 -0.4292 4.7046 -6.9435 22 6 -1.2506 4.1472 -4.2327 23 7 -1.2412 3.7325 -2.9424 24 6 -2.3653 3.8239 -2.0074 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8932 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 3.8293 -0.0613 2.9497 31 1 2.2719 2.1232 -1.9978 32 1 1.7933 2.9989 -3.9125 33 1 -2.0892 4.5995 -4.7411 34 1 -2.3755 4.8119 -1.5469 35 1 -3.2996 3.6643 -2.5456 36 1 -2.2572 3.0637 -1.2338 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000545879668.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:05 Heat of formation + Delta-G solvation = -15.890439 kcal Electronic energy + Delta-G solvation = -22016.628681 eV Core-core repulsion = 18504.324884 eV Total energy + Delta-G solvation = -3512.303798 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.45914 -42.45885 -40.36154 -37.51442 -37.03824 -34.82803 -34.13026 -33.02146 -31.13739 -29.05499 -28.66135 -26.42313 -25.28713 -23.91676 -22.35897 -21.65746 -21.09209 -20.06168 -19.51727 -18.53795 -18.45853 -17.71868 -17.20292 -16.94648 -16.81946 -16.11215 -15.89524 -15.26234 -14.72237 -14.59504 -14.14591 -13.99028 -13.62039 -13.46091 -13.40578 -13.20644 -12.89616 -12.72272 -12.64107 -12.29733 -12.20290 -12.17837 -12.09965 -11.63495 -11.09478 -10.99763 -10.58041 -10.55042 -10.02306 -9.68815 -8.18668 -6.34942 -0.76283 0.09300 0.35975 1.17523 1.36246 1.43578 1.46841 1.57092 2.16917 2.33308 2.53543 3.12004 3.31003 3.54269 3.68456 3.85063 4.24074 4.31992 4.38992 4.46876 4.52509 4.68021 4.69595 4.74869 5.02850 5.17800 5.24859 5.37749 5.38673 5.46438 5.57581 5.61037 5.75298 5.85377 6.13392 6.64683 6.70549 6.79232 7.23288 7.40035 8.86726 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.020010 B = 0.004572 C = 0.003917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.977402 B = 6122.756781 C = 7147.181722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.123 4.123 3 C 0.281 3.719 4 H 0.010 0.990 5 C -0.550 4.550 6 H 0.070 0.930 7 C 0.021 3.979 8 N -0.911 5.911 9 Si 0.965 3.035 10 H -0.264 1.264 11 H -0.284 1.284 12 H -0.279 1.279 13 N -0.690 5.690 14 C 0.576 3.424 15 O -0.572 6.572 16 C -0.036 4.036 17 C -0.088 4.088 18 C -0.154 4.154 19 N 0.070 4.930 20 O -0.211 6.211 21 O -0.166 6.166 22 C 0.140 3.860 23 N -0.385 5.385 24 C 0.054 3.946 25 H 0.047 0.953 26 H 0.032 0.968 27 H 0.040 0.960 28 H 0.040 0.960 29 H 0.075 0.925 30 H 0.266 0.734 31 H 0.404 0.596 32 H 0.174 0.826 33 H 0.243 0.757 34 H 0.101 0.899 35 H 0.134 0.866 36 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.148 5.950 -10.567 16.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.162 4.162 3 C 0.178 3.822 4 H 0.028 0.972 5 C -0.588 4.588 6 H 0.088 0.912 7 C -0.179 4.179 8 N -0.550 5.550 9 Si 0.791 3.209 10 H -0.188 1.188 11 H -0.210 1.210 12 H -0.205 1.205 13 N -0.338 5.338 14 C 0.363 3.637 15 O -0.454 6.454 16 C -0.148 4.148 17 C -0.113 4.113 18 C -0.246 4.246 19 N 0.582 4.418 20 O -0.415 6.415 21 O -0.383 6.383 22 C -0.006 4.006 23 N -0.056 5.056 24 C -0.084 4.084 25 H 0.066 0.934 26 H 0.051 0.949 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.094 0.906 30 H 0.075 0.925 31 H 0.239 0.761 32 H 0.191 0.809 33 H 0.259 0.741 34 H 0.119 0.881 35 H 0.152 0.848 36 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -12.015 5.691 -8.732 15.905 hybrid contribution 1.537 -0.068 -0.236 1.557 sum -10.477 5.623 -8.968 14.894 Atomic orbital electron populations 1.21659 0.96787 0.99558 1.00115 1.21809 0.93982 0.98871 1.01582 1.18479 0.93805 0.89221 0.80684 0.97174 1.21579 0.91405 1.39070 1.06736 0.91208 1.25658 1.02933 0.94319 0.95027 1.70017 1.36863 1.38240 1.09841 0.85391 0.79560 0.77825 0.78148 1.18753 1.20996 1.20471 1.46067 1.14458 1.54947 1.18285 1.17010 0.82699 0.78190 0.85827 1.90765 1.54529 1.60348 1.39792 1.20166 0.87540 1.11406 0.95730 1.21334 1.01001 0.99786 0.89178 1.20167 0.99168 1.21581 0.83667 1.42753 0.99874 0.97030 1.02123 1.94569 1.06782 1.58535 1.81628 1.94477 1.48618 1.43658 1.51551 1.22348 0.98209 0.96734 0.83265 1.44331 1.10877 1.40426 1.09945 1.22837 0.86261 1.06194 0.93105 0.93364 0.94859 0.94134 0.94099 0.90621 0.92518 0.76089 0.80865 0.74121 0.88051 0.84811 0.88930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.04 8.58 71.98 0.62 -4.43 16 2 C -0.12 -5.69 5.45 30.59 0.17 -5.53 16 3 C 0.28 13.49 2.25 44.24 0.10 13.59 16 4 H 0.01 0.59 7.51 -2.39 -0.02 0.57 16 5 C -0.55 -27.91 8.73 25.60 0.22 -27.69 16 6 H 0.07 3.37 7.74 -2.91 -0.02 3.35 16 7 C 0.02 1.10 5.29 84.66 0.45 1.55 16 8 N -0.91 -49.94 11.29 21.45 0.24 -49.70 16 9 Si 0.97 41.07 29.54 68.60 2.03 43.09 16 10 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 11 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16 12 H -0.28 -11.66 7.11 99.48 0.71 -10.96 16 13 N -0.69 -26.69 5.01 -450.07 -2.25 -28.94 16 14 C 0.58 20.64 6.14 86.45 0.53 21.17 16 15 O -0.57 -23.24 12.20 -4.34 -0.05 -23.29 16 16 C -0.04 -0.99 6.89 40.35 0.28 -0.71 16 17 C -0.09 -2.28 10.08 22.57 0.23 -2.05 16 18 C -0.15 -3.67 7.11 36.12 0.26 -3.41 16 19 N 0.07 1.94 4.45 -47.08 -0.21 1.73 16 20 O -0.21 -6.64 19.05 18.89 0.36 -6.28 16 21 O -0.17 -4.40 19.02 18.88 0.36 -4.04 16 22 C 0.14 2.34 11.06 83.48 0.92 3.26 16 23 N -0.38 -7.71 3.16 -534.31 -1.69 -9.40 16 24 C 0.05 0.79 10.67 127.77 1.36 2.15 16 25 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 26 H 0.03 1.45 7.92 -2.39 -0.02 1.43 16 27 H 0.04 1.56 5.76 -2.38 -0.01 1.55 16 28 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 29 H 0.08 3.94 5.95 -2.39 -0.01 3.93 16 30 H 0.27 13.81 8.31 -92.71 -0.77 13.04 16 31 H 0.40 13.68 7.44 -92.71 -0.69 12.99 16 32 H 0.17 4.23 7.45 -2.91 -0.02 4.21 16 33 H 0.24 1.71 8.06 -2.91 -0.02 1.68 16 34 H 0.10 1.24 8.14 -2.38 -0.02 1.22 16 35 H 0.13 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.09 1.97 6.16 -2.39 -0.01 1.95 16 Total: -1.00 -65.54 312.15 4.35 -61.19 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: 0.44 Total: 17.75 kcal Atomic # 6 Polarization: -7.23 SS G_CDS: 5.13 Total: -2.10 kcal Atomic # 7 Polarization: -82.41 SS G_CDS: -3.91 Total: -86.32 kcal Atomic # 8 Polarization: -34.28 SS G_CDS: 0.67 Total: -33.62 kcal Atomic # 14 Polarization: 41.07 SS G_CDS: 2.03 Total: 43.09 kcal Total: -65.54 4.35 -61.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000545879668.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.299 kcal (2) G-P(sol) polarization free energy of solvation -65.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds