Wall clock time and date at job start Tue Mar 31 2020 06:41:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47207 * 2 1 4 4 O 1.42906 * 109.46912 * 240.00105 * 2 1 3 5 5 C 1.52993 * 109.47326 * 120.00580 * 2 1 3 6 6 N 1.46507 * 109.47218 * 185.00195 * 5 2 1 7 7 C 1.40007 * 120.00020 * 180.02562 * 6 5 2 8 8 C 1.38639 * 120.09830 * 359.97438 * 7 6 5 9 9 C 1.38288 * 120.00011 * 179.97438 * 8 7 6 10 10 C 1.38270 * 120.20774 * 359.97438 * 9 8 7 11 11 C 1.38244 * 120.19345 * 0.02562 * 10 9 8 12 12 C 1.38722 * 119.99846 * 359.97438 * 11 10 9 13 13 S 1.76202 * 120.10416 * 180.02562 * 12 11 10 14 14 C 1.81392 * 102.99827 * 354.28764 * 13 12 11 15 15 H 1.09001 * 109.47857 * 52.13198 * 14 13 12 16 16 C 1.53003 * 109.47329 * 172.13488 * 14 13 12 17 17 C 1.50702 * 109.46933 * 292.13059 * 14 13 12 18 18 H 1.07997 * 120.00008 * 0.02562 * 17 14 13 19 19 C 1.37877 * 119.99702 * 180.02562 * 17 14 13 20 20 N 1.31509 * 120.00453 * 359.97438 * 19 17 14 21 21 Si 1.86811 * 119.99825 * 179.97438 * 19 17 14 22 22 H 1.48504 * 109.46928 * 59.99667 * 21 19 17 23 23 H 1.48498 * 109.47014 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.46985 * 300.00125 * 21 19 17 25 25 H 1.09004 * 109.46932 * 299.99740 * 1 2 3 26 26 H 1.08995 * 109.47423 * 59.99710 * 1 2 3 27 27 H 1.08996 * 109.47207 * 179.97438 * 1 2 3 28 28 H 0.96693 * 114.00120 * 299.99823 * 4 2 1 29 29 H 1.08997 * 109.47842 * 65.00027 * 5 2 1 30 30 H 1.09005 * 109.47125 * 304.99432 * 5 2 1 31 31 H 0.97001 * 119.99450 * 359.97438 * 6 5 2 32 32 H 1.08003 * 119.99920 * 0.25311 * 8 7 6 33 33 H 1.08000 * 119.89383 * 179.97438 * 9 8 7 34 34 H 1.07998 * 119.89923 * 180.02562 * 10 9 8 35 35 H 1.08004 * 120.00034 * 179.97438 * 11 10 9 36 36 H 1.08996 * 109.47506 * 66.02370 * 16 14 13 37 37 H 1.08998 * 109.47502 * 186.03158 * 16 14 13 38 38 H 1.09005 * 109.46760 * 306.03295 * 16 14 13 39 39 H 0.97000 * 120.00326 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6737 -1.1669 5 6 2.0400 -0.7213 1.2491 6 7 3.5001 -0.6179 1.3108 7 6 4.1993 -1.2056 2.3720 8 6 3.5120 -1.8854 3.3657 9 6 4.2047 -2.4655 4.4126 10 6 5.5828 -2.3706 4.4722 11 6 6.2766 -1.6947 3.4858 12 6 5.5901 -1.1097 2.4319 13 16 6.4715 -0.2481 1.1727 14 6 8.1775 -0.2582 1.7891 15 1 8.4674 -1.2786 2.0396 16 6 9.1134 0.2873 0.7087 17 6 8.2722 0.6072 3.0193 18 1 7.3938 1.1123 3.3931 19 6 9.4802 0.7540 3.6675 20 7 10.5496 0.1385 3.2126 21 14 9.5978 1.8272 5.1920 22 1 8.6896 1.2981 6.2411 23 1 10.9944 1.8188 5.6967 24 1 9.2026 3.2173 4.8504 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 1.7210 -1.5952 -1.2330 29 1 1.7518 -1.7716 1.2055 30 1 1.6055 -0.2618 2.1369 31 1 3.9824 -0.1429 0.6161 32 1 2.4359 -1.9657 3.3198 33 1 3.6675 -2.9943 5.1860 34 1 6.1188 -2.8259 5.2919 35 1 7.3530 -1.6222 3.5357 36 1 8.8928 1.3404 0.5346 37 1 10.1475 0.1821 1.0368 38 1 8.9667 -0.2721 -0.2153 39 1 11.3994 0.2415 3.6688 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000579464059.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:37 Heat of formation + Delta-G solvation = -38.372909 kcal Electronic energy + Delta-G solvation = -19661.192950 eV Core-core repulsion = 16694.207453 eV Total energy + Delta-G solvation = -2966.985496 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.00501 -37.81463 -34.79519 -34.01336 -31.53969 -30.55336 -30.11487 -28.73186 -25.64735 -25.22410 -22.68856 -21.95663 -21.30500 -20.55438 -17.29700 -16.77988 -16.40253 -16.15971 -15.96824 -15.34581 -14.78381 -14.27126 -13.94829 -13.65952 -13.48355 -13.35074 -13.09644 -12.81252 -12.62976 -12.32746 -12.05964 -11.66966 -11.50971 -11.15159 -11.04153 -10.93142 -10.67259 -10.47425 -10.32991 -10.27075 -9.94738 -9.71347 -9.32980 -8.89755 -8.85091 -8.43176 -7.31031 -6.31146 -6.02129 -4.22485 1.95057 2.18006 2.76535 3.27969 3.31609 3.35581 3.59847 3.82684 4.22784 4.36448 4.43033 4.55210 4.83448 4.91262 5.16976 5.27186 5.37814 5.38465 5.51279 5.60856 5.74446 5.83600 5.89184 6.11487 6.24999 6.55751 6.65161 6.72477 6.77671 6.86877 6.95311 7.22219 7.35483 7.42542 7.44850 7.62799 7.75975 7.84216 8.06475 8.10744 8.78439 9.41872 10.90609 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.019958 B = 0.004888 C = 0.004401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.616729 B = 5727.116593 C = 6359.952666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.090 3.910 3 H 0.105 0.895 4 O -0.557 6.557 5 C 0.099 3.901 6 N -0.742 5.742 7 C 0.219 3.781 8 C -0.197 4.197 9 C -0.094 4.094 10 C -0.165 4.165 11 C -0.067 4.067 12 C -0.119 4.119 13 S -0.202 6.202 14 C 0.098 3.902 15 H 0.049 0.951 16 C -0.124 4.124 17 C -0.516 4.516 18 H 0.066 0.934 19 C 0.070 3.930 20 N -0.889 5.889 21 Si 0.897 3.103 22 H -0.275 1.275 23 H -0.286 1.286 24 H -0.275 1.275 25 H 0.068 0.932 26 H 0.067 0.933 27 H 0.060 0.940 28 H 0.375 0.625 29 H 0.057 0.943 30 H 0.063 0.937 31 H 0.407 0.593 32 H 0.112 0.888 33 H 0.111 0.889 34 H 0.113 0.887 35 H 0.145 0.855 36 H 0.039 0.961 37 H 0.097 0.903 38 H 0.019 0.981 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.153 -3.658 -2.818 16.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.031 3.969 3 H 0.122 0.878 4 O -0.362 6.362 5 C -0.027 4.027 6 N -0.376 5.376 7 C 0.111 3.889 8 C -0.222 4.222 9 C -0.116 4.116 10 C -0.187 4.187 11 C -0.091 4.091 12 C -0.235 4.235 13 S 0.043 5.957 14 C -0.030 4.030 15 H 0.067 0.933 16 C -0.183 4.183 17 C -0.555 4.555 18 H 0.084 0.916 19 C -0.134 4.134 20 N -0.526 5.526 21 Si 0.724 3.276 22 H -0.200 1.200 23 H -0.212 1.212 24 H -0.201 1.201 25 H 0.087 0.913 26 H 0.086 0.914 27 H 0.079 0.921 28 H 0.222 0.778 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.244 0.756 32 H 0.130 0.870 33 H 0.129 0.871 34 H 0.131 0.869 35 H 0.163 0.837 36 H 0.058 0.942 37 H 0.115 0.885 38 H 0.038 0.962 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -16.198 -2.587 -4.000 16.884 hybrid contribution 0.427 -0.275 2.068 2.130 sum -15.771 -2.862 -1.931 16.144 Atomic orbital electron populations 1.22422 0.95579 1.02776 1.03142 1.22140 0.93223 0.97290 0.84244 0.87766 1.86641 1.77235 1.29025 1.43320 1.21956 0.82412 1.00032 0.98274 1.44578 1.04463 1.61774 1.26743 1.17343 0.89221 0.93661 0.88636 1.20322 0.98540 1.06261 0.97034 1.20737 0.94249 0.99328 0.97286 1.20825 0.94012 1.03699 1.00131 1.21430 1.01401 0.94148 0.92169 1.21104 0.93592 1.06916 1.01936 1.84447 1.12040 1.70635 1.28578 1.21046 0.84366 1.00426 0.97128 0.93262 1.21626 1.02772 0.98837 0.95101 1.21222 0.95586 1.29496 1.09181 0.91629 1.24950 0.95437 0.95520 0.97490 1.69859 1.00067 1.42604 1.40108 0.86561 0.77044 0.81067 0.82942 1.19993 1.21177 1.20077 0.91274 0.91382 0.92090 0.77829 0.92512 0.91904 0.75593 0.86997 0.87067 0.86872 0.83749 0.94229 0.88501 0.96158 0.92556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.26 9.53 37.16 0.35 -0.91 16 2 C 0.09 0.88 3.62 -26.73 -0.10 0.78 16 3 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 4 O -0.56 -6.13 13.29 -35.23 -0.47 -6.60 16 5 C 0.10 1.10 4.56 -4.04 -0.02 1.08 16 6 N -0.74 -11.55 5.63 -58.44 -0.33 -11.88 16 7 C 0.22 3.97 6.66 -83.49 -0.56 3.41 16 8 C -0.20 -3.17 9.31 -39.41 -0.37 -3.53 16 9 C -0.09 -1.51 10.04 -39.55 -0.40 -1.91 16 10 C -0.16 -2.99 10.04 -39.57 -0.40 -3.39 16 11 C -0.07 -1.42 8.80 -39.40 -0.35 -1.77 16 12 C -0.12 -2.49 6.05 -38.92 -0.24 -2.73 16 13 S -0.20 -4.44 19.77 -107.50 -2.13 -6.57 16 14 C 0.10 2.42 2.01 -27.88 -0.06 2.37 16 15 H 0.05 1.30 7.00 -51.92 -0.36 0.94 16 16 C -0.12 -2.95 8.88 37.16 0.33 -2.62 16 17 C -0.52 -13.71 6.90 -34.44 -0.24 -13.95 16 18 H 0.07 1.81 7.71 -52.49 -0.40 1.41 16 19 C 0.07 1.86 5.30 -17.82 -0.09 1.76 16 20 N -0.89 -24.22 11.39 55.43 0.63 -23.59 16 21 Si 0.90 21.01 29.54 -169.99 -5.02 15.99 16 22 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 23 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 25 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.37 2.84 9.04 45.56 0.41 3.25 16 29 H 0.06 0.58 7.95 -51.93 -0.41 0.17 16 30 H 0.06 0.67 7.96 -51.93 -0.41 0.25 16 31 H 0.41 6.84 7.02 -40.82 -0.29 6.55 16 32 H 0.11 1.48 6.74 -52.48 -0.35 1.13 16 33 H 0.11 1.43 8.06 -52.49 -0.42 1.01 16 34 H 0.11 1.83 8.06 -52.49 -0.42 1.41 16 35 H 0.14 3.39 5.09 -52.48 -0.27 3.13 16 36 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.10 2.47 6.26 -51.93 -0.32 2.14 16 38 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 LS Contribution 330.68 15.07 4.98 4.98 Total: -1.00 -28.83 330.68 -9.38 -38.21 By element: Atomic # 1 Polarization: 15.78 SS G_CDS: -4.93 Total: 10.84 kcal Atomic # 6 Polarization: -19.27 SS G_CDS: -2.12 Total: -21.39 kcal Atomic # 7 Polarization: -35.77 SS G_CDS: 0.30 Total: -35.47 kcal Atomic # 8 Polarization: -6.13 SS G_CDS: -0.47 Total: -6.60 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Atomic # 16 Polarization: -4.44 SS G_CDS: -2.13 Total: -6.57 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -28.83 -9.38 -38.21 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579464059.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.159 kcal (2) G-P(sol) polarization free energy of solvation -28.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds