Wall clock time and date at job start Tue Mar 31 2020 06:41:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47207 * 2 1 4 4 O 1.42906 * 109.46912 * 240.00105 * 2 1 3 5 5 C 1.52993 * 109.47326 * 120.00580 * 2 1 3 6 6 N 1.46507 * 109.47218 * 185.00195 * 5 2 1 7 7 C 1.40007 * 120.00020 * 180.02562 * 6 5 2 8 8 C 1.38639 * 120.09830 * 359.97438 * 7 6 5 9 9 C 1.38288 * 120.00011 * 179.97438 * 8 7 6 10 10 C 1.38270 * 120.20774 * 359.97438 * 9 8 7 11 11 C 1.38244 * 120.19345 * 0.02562 * 10 9 8 12 12 C 1.38722 * 119.99846 * 359.97438 * 11 10 9 13 13 S 1.76202 * 120.10416 * 180.02562 * 12 11 10 14 14 C 1.81392 * 102.99827 * 354.28764 * 13 12 11 15 15 H 1.09001 * 109.47857 * 52.13198 * 14 13 12 16 16 C 1.53003 * 109.47329 * 172.13488 * 14 13 12 17 17 C 1.50702 * 109.46933 * 292.13059 * 14 13 12 18 18 H 1.07997 * 120.00008 * 0.02562 * 17 14 13 19 19 C 1.37877 * 119.99702 * 180.02562 * 17 14 13 20 20 N 1.31509 * 120.00453 * 359.97438 * 19 17 14 21 21 Si 1.86811 * 119.99825 * 179.97438 * 19 17 14 22 22 H 1.48504 * 109.46928 * 59.99667 * 21 19 17 23 23 H 1.48498 * 109.47014 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.46985 * 300.00125 * 21 19 17 25 25 H 1.09004 * 109.46932 * 299.99740 * 1 2 3 26 26 H 1.08995 * 109.47423 * 59.99710 * 1 2 3 27 27 H 1.08996 * 109.47207 * 179.97438 * 1 2 3 28 28 H 0.96693 * 114.00120 * 299.99823 * 4 2 1 29 29 H 1.08997 * 109.47842 * 65.00027 * 5 2 1 30 30 H 1.09005 * 109.47125 * 304.99432 * 5 2 1 31 31 H 0.97001 * 119.99450 * 359.97438 * 6 5 2 32 32 H 1.08003 * 119.99920 * 0.25311 * 8 7 6 33 33 H 1.08000 * 119.89383 * 179.97438 * 9 8 7 34 34 H 1.07998 * 119.89923 * 180.02562 * 10 9 8 35 35 H 1.08004 * 120.00034 * 179.97438 * 11 10 9 36 36 H 1.08996 * 109.47506 * 66.02370 * 16 14 13 37 37 H 1.08998 * 109.47502 * 186.03158 * 16 14 13 38 38 H 1.09005 * 109.46760 * 306.03295 * 16 14 13 39 39 H 0.97000 * 120.00326 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6737 -1.1669 5 6 2.0400 -0.7213 1.2491 6 7 3.5001 -0.6179 1.3108 7 6 4.1993 -1.2056 2.3720 8 6 3.5120 -1.8854 3.3657 9 6 4.2047 -2.4655 4.4126 10 6 5.5828 -2.3706 4.4722 11 6 6.2766 -1.6947 3.4858 12 6 5.5901 -1.1097 2.4319 13 16 6.4715 -0.2481 1.1727 14 6 8.1775 -0.2582 1.7891 15 1 8.4674 -1.2786 2.0396 16 6 9.1134 0.2873 0.7087 17 6 8.2722 0.6072 3.0193 18 1 7.3938 1.1123 3.3931 19 6 9.4802 0.7540 3.6675 20 7 10.5496 0.1385 3.2126 21 14 9.5978 1.8272 5.1920 22 1 8.6896 1.2981 6.2411 23 1 10.9944 1.8188 5.6967 24 1 9.2026 3.2173 4.8504 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 1.7210 -1.5952 -1.2330 29 1 1.7518 -1.7716 1.2055 30 1 1.6055 -0.2618 2.1369 31 1 3.9824 -0.1429 0.6161 32 1 2.4359 -1.9657 3.3198 33 1 3.6675 -2.9943 5.1860 34 1 6.1188 -2.8259 5.2919 35 1 7.3530 -1.6222 3.5357 36 1 8.8928 1.3404 0.5346 37 1 10.1475 0.1821 1.0368 38 1 8.9667 -0.2721 -0.2153 39 1 11.3994 0.2415 3.6688 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000579464059.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:37 Heat of formation + Delta-G solvation = -56.556690 kcal Electronic energy + Delta-G solvation = -19661.981457 eV Core-core repulsion = 16694.207453 eV Total energy + Delta-G solvation = -2967.774004 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.25116 -38.76238 -36.26498 -35.71509 -32.45838 -32.36259 -31.66142 -29.87874 -27.38166 -26.52255 -23.88713 -23.63680 -22.44118 -22.01321 -18.67663 -18.41058 -17.81528 -17.40604 -16.98965 -16.89246 -16.21898 -15.72763 -15.15222 -15.04315 -14.77852 -14.75359 -14.67179 -14.18639 -13.58268 -13.41685 -13.35805 -13.19836 -12.86726 -12.79763 -12.72978 -12.40117 -12.33542 -12.15439 -11.79757 -11.55565 -11.30219 -11.08199 -10.95353 -10.81130 -10.50503 -10.29912 -8.72965 -8.22180 -7.72670 -6.33463 0.52567 0.77378 1.11016 1.39313 1.39879 1.47829 1.94850 2.39302 2.56322 3.01077 3.09603 3.51408 3.74646 4.06761 4.13862 4.22228 4.31492 4.54338 4.61204 4.62645 4.63752 4.72493 4.83503 4.85144 4.88519 4.91079 5.15306 5.16136 5.27929 5.33753 5.37071 5.56709 5.59959 5.76491 5.81087 6.03814 6.05168 6.50724 6.67639 6.73672 6.85669 7.32553 8.85067 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.019958 B = 0.004888 C = 0.004401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.616729 B = 5727.116593 C = 6359.952666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.093 3.907 3 H 0.089 0.911 4 O -0.579 6.579 5 C 0.095 3.905 6 N -0.744 5.744 7 C 0.217 3.783 8 C -0.191 4.191 9 C -0.077 4.077 10 C -0.179 4.179 11 C -0.090 4.090 12 C -0.155 4.155 13 S -0.198 6.198 14 C 0.095 3.905 15 H 0.022 0.978 16 C -0.113 4.113 17 C -0.521 4.521 18 H 0.049 0.951 19 C 0.029 3.971 20 N -0.911 5.911 21 Si 0.953 3.047 22 H -0.274 1.274 23 H -0.278 1.278 24 H -0.273 1.273 25 H 0.079 0.921 26 H 0.067 0.933 27 H 0.076 0.924 28 H 0.388 0.612 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.398 0.602 32 H 0.151 0.849 33 H 0.154 0.846 34 H 0.127 0.873 35 H 0.108 0.892 36 H 0.035 0.965 37 H 0.078 0.922 38 H 0.037 0.963 39 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.236 -4.090 -1.856 19.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.034 3.966 3 H 0.107 0.893 4 O -0.387 6.387 5 C -0.029 4.029 6 N -0.375 5.375 7 C 0.108 3.892 8 C -0.215 4.215 9 C -0.098 4.098 10 C -0.200 4.200 11 C -0.114 4.114 12 C -0.272 4.272 13 S 0.045 5.955 14 C -0.033 4.033 15 H 0.040 0.960 16 C -0.173 4.173 17 C -0.560 4.560 18 H 0.068 0.932 19 C -0.173 4.173 20 N -0.549 5.549 21 Si 0.778 3.222 22 H -0.199 1.199 23 H -0.203 1.203 24 H -0.199 1.199 25 H 0.098 0.902 26 H 0.086 0.914 27 H 0.095 0.905 28 H 0.238 0.762 29 H 0.093 0.907 30 H 0.094 0.906 31 H 0.233 0.767 32 H 0.168 0.832 33 H 0.172 0.828 34 H 0.145 0.855 35 H 0.126 0.874 36 H 0.054 0.946 37 H 0.096 0.904 38 H 0.056 0.944 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -19.321 -3.034 -3.042 19.793 hybrid contribution 1.243 -0.217 1.760 2.166 sum -18.079 -3.251 -1.281 18.413 Atomic orbital electron populations 1.22339 0.93049 1.03971 1.03639 1.22125 0.95001 0.96211 0.83271 0.89284 1.86610 1.77872 1.30319 1.43879 1.22249 0.79595 1.01504 0.99509 1.44816 1.06291 1.60810 1.25569 1.17576 0.88269 0.93589 0.89752 1.20766 1.00353 1.04626 0.95803 1.21200 0.93199 0.97718 0.97719 1.21034 0.95458 1.03756 0.99800 1.21237 0.99934 0.96286 0.93993 1.21189 0.95019 1.08845 1.02113 1.84125 1.10012 1.71813 1.29512 1.20819 0.86889 0.98508 0.97073 0.95985 1.21475 1.01508 0.98745 0.95565 1.21237 0.95114 1.29543 1.10080 0.93236 1.25612 0.95139 0.96611 0.99921 1.69959 1.00360 1.43477 1.41106 0.85684 0.77254 0.79429 0.79834 1.19885 1.20315 1.19856 0.90238 0.91440 0.90538 0.76226 0.90658 0.90568 0.76712 0.83189 0.82828 0.85536 0.87442 0.94592 0.90381 0.94386 0.92440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.86 9.53 71.98 0.69 -1.17 16 2 C 0.09 1.61 3.62 30.59 0.11 1.72 16 3 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 4 O -0.58 -11.81 13.29 -148.98 -1.98 -13.79 16 5 C 0.10 1.82 4.56 86.38 0.39 2.22 16 6 N -0.74 -21.96 5.63 -338.82 -1.91 -23.87 16 7 C 0.22 7.54 6.66 38.24 0.25 7.79 16 8 C -0.19 -5.43 9.31 22.38 0.21 -5.22 16 9 C -0.08 -2.20 10.04 22.29 0.22 -1.97 16 10 C -0.18 -6.31 10.04 22.28 0.22 -6.09 16 11 C -0.09 -3.94 8.80 22.39 0.20 -3.74 16 12 C -0.15 -6.60 6.05 22.70 0.14 -6.46 16 13 S -0.20 -9.02 19.77 -56.49 -1.12 -10.14 16 14 C 0.10 4.94 2.01 29.85 0.06 5.00 16 15 H 0.02 1.25 7.00 -2.39 -0.02 1.24 16 16 C -0.11 -5.60 8.88 71.98 0.64 -4.96 16 17 C -0.52 -28.78 6.90 25.60 0.18 -28.60 16 18 H 0.05 2.84 7.71 -2.91 -0.02 2.82 16 19 C 0.03 1.56 5.30 84.66 0.45 2.01 16 20 N -0.91 -51.16 11.39 21.45 0.24 -50.91 16 21 Si 0.95 43.75 29.54 68.60 2.03 45.77 16 22 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 23 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 24 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 25 H 0.08 0.71 8.14 -2.39 -0.02 0.70 16 26 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.39 5.07 9.04 -74.06 -0.67 4.40 16 29 H 0.08 1.21 7.95 -2.39 -0.02 1.19 16 30 H 0.08 1.30 7.96 -2.38 -0.02 1.28 16 31 H 0.40 13.18 7.02 -92.71 -0.65 12.53 16 32 H 0.15 3.11 6.74 -2.91 -0.02 3.09 16 33 H 0.15 3.08 8.06 -2.91 -0.02 3.06 16 34 H 0.13 3.99 8.06 -2.91 -0.02 3.96 16 35 H 0.11 5.42 5.09 -2.91 -0.01 5.41 16 36 H 0.03 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.08 4.13 6.26 -2.39 -0.01 4.12 16 38 H 0.04 1.68 8.14 -2.38 -0.02 1.66 16 39 H 0.27 14.23 8.31 -92.71 -0.77 13.46 16 Total: -1.00 -64.46 330.68 0.77 -63.69 By element: Atomic # 1 Polarization: 28.98 SS G_CDS: -0.26 Total: 28.72 kcal Atomic # 6 Polarization: -43.24 SS G_CDS: 3.76 Total: -39.48 kcal Atomic # 7 Polarization: -73.12 SS G_CDS: -1.66 Total: -74.78 kcal Atomic # 8 Polarization: -11.81 SS G_CDS: -1.98 Total: -13.79 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.77 kcal Atomic # 16 Polarization: -9.02 SS G_CDS: -1.12 Total: -10.14 kcal Total: -64.46 0.77 -63.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579464059.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.137 kcal (2) G-P(sol) polarization free energy of solvation -64.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds