Wall clock time and date at job start Tue Mar 31 2020 06:41:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09004 * 109.46794 * 2 1 4 4 C 1.50700 * 109.47007 * 239.99887 * 2 1 3 5 5 H 1.07997 * 119.99979 * 239.99309 * 4 2 1 6 6 C 1.37878 * 120.00228 * 60.00189 * 4 2 1 7 7 N 1.31516 * 119.99859 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00126 * 179.97438 * 6 4 2 9 9 H 1.48494 * 109.47216 * 60.00139 * 8 6 4 10 10 H 1.48500 * 109.46939 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.47118 * 299.99457 * 8 6 4 12 12 S 1.81399 * 109.47291 * 119.99774 * 2 1 3 13 13 C 1.76200 * 102.99857 * 289.52820 * 12 2 1 14 14 C 1.38731 * 120.10312 * 354.35322 * 13 12 2 15 15 C 1.38248 * 119.99324 * 180.28116 * 14 13 12 16 16 C 1.38274 * 120.19700 * 359.72867 * 15 14 13 17 17 C 1.38283 * 120.20135 * 359.97438 * 16 15 14 18 18 C 1.38645 * 120.01038 * 0.02562 * 17 16 15 19 19 N 1.39999 * 120.10411 * 179.97438 * 18 17 16 20 20 C 1.46506 * 119.99784 * 0.02562 * 19 18 17 21 21 C 1.53000 * 109.47132 * 179.97438 * 20 19 18 22 22 H 1.08996 * 109.47198 * 305.00127 * 21 20 19 23 23 C 1.53003 * 109.47102 * 185.00034 * 21 20 19 24 24 O 1.42906 * 109.46945 * 65.00117 * 21 20 19 25 25 H 1.09004 * 109.47051 * 53.73221 * 1 2 3 26 26 H 1.08995 * 109.46738 * 173.73333 * 1 2 3 27 27 H 1.08992 * 109.47078 * 293.73302 * 1 2 3 28 28 H 0.96996 * 120.00444 * 180.02562 * 7 6 4 29 29 H 1.08000 * 120.00603 * 0.02562 * 14 13 12 30 30 H 1.07996 * 119.90434 * 179.74170 * 15 14 13 31 31 H 1.07998 * 119.89933 * 180.02562 * 16 15 14 32 32 H 1.08007 * 119.99469 * 180.02562 * 17 16 15 33 33 H 0.96998 * 120.00742 * 180.02562 * 19 18 17 34 34 H 1.08999 * 109.47025 * 299.99951 * 20 19 18 35 35 H 1.09002 * 109.46896 * 59.99938 * 20 19 18 36 36 H 1.08994 * 109.47159 * 59.99961 * 23 21 20 37 37 H 1.09001 * 109.46712 * 180.02562 * 23 21 20 38 38 H 1.08996 * 109.47170 * 300.00110 * 23 21 20 39 39 H 0.96704 * 113.99825 * 59.99967 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6534 -1.5884 -1.1314 6 6 1.6993 -0.2394 -2.4828 7 7 0.9429 0.8296 -2.6034 8 14 2.3226 -1.1196 -4.0079 9 1 1.8281 -2.5198 -4.0082 10 1 1.8270 -0.4200 -5.2204 11 1 3.8076 -1.1190 -4.0077 12 16 2.1348 -0.8551 1.4811 13 6 1.7258 0.2638 2.7794 14 6 1.1967 1.5113 2.4820 15 6 0.8820 2.3896 3.5022 16 6 1.0879 2.0268 4.8205 17 6 1.6092 0.7831 5.1264 18 6 1.9277 -0.1044 4.1100 19 7 2.4561 -1.3639 4.4175 20 6 2.6727 -1.7460 5.8151 21 6 3.2530 -3.1605 5.8731 22 1 2.5988 -3.8441 5.3320 23 6 3.3628 -3.6074 7.3323 24 8 4.5503 -3.1680 5.2737 25 1 -0.3633 0.6079 -0.8286 26 1 -0.3632 -1.0215 -0.1122 27 1 -0.3633 0.4136 0.9407 28 1 0.7082 1.1608 -3.4844 29 1 1.0343 1.7978 1.4534 30 1 0.4741 3.3619 3.2688 31 1 0.8400 2.7166 5.6137 32 1 1.7682 0.5030 6.1574 33 1 2.6788 -1.9836 3.7053 34 1 3.3694 -1.0478 6.2789 35 1 1.7232 -1.7210 6.3499 36 1 2.3734 -3.6016 7.7894 37 1 3.7767 -4.6149 7.3735 38 1 4.0170 -2.9238 7.8734 39 1 5.1862 -2.5808 5.7049 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000579464060.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:43 Heat of formation + Delta-G solvation = -37.984414 kcal Electronic energy + Delta-G solvation = -19486.404409 eV Core-core repulsion = 16519.435760 eV Total energy + Delta-G solvation = -2966.968650 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -39.11669 -37.88277 -34.89401 -34.02849 -31.58119 -30.99616 -29.88447 -28.83817 -25.65486 -25.27371 -22.79320 -21.86651 -21.35039 -20.84728 -17.67335 -16.88480 -16.28966 -16.15865 -16.01373 -15.39744 -14.79231 -14.38854 -13.99300 -13.75092 -13.60363 -13.46400 -13.13941 -12.71576 -12.52258 -12.39095 -12.14559 -11.83957 -11.59999 -11.16963 -11.06326 -10.96850 -10.88627 -10.54576 -10.37237 -10.30357 -9.91538 -9.83462 -9.36525 -8.98641 -8.82592 -8.45526 -7.42906 -6.25942 -6.17326 -4.25646 1.78498 2.02097 2.64464 3.27151 3.30616 3.34952 3.54166 3.81332 4.19709 4.27082 4.33830 4.51479 4.80540 4.88391 5.14931 5.23166 5.26409 5.34629 5.43252 5.46926 5.68352 5.73198 5.85688 5.92351 6.10236 6.34857 6.57111 6.64883 6.77183 6.81102 6.84771 7.02571 7.22216 7.39507 7.42545 7.64287 7.65129 7.81639 8.02284 8.05514 8.72938 9.37973 10.89043 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.018174 B = 0.004688 C = 0.003842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.295658 B = 5970.794171 C = 7285.740374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.100 3.900 3 H 0.050 0.950 4 C -0.510 4.510 5 H 0.066 0.934 6 C 0.071 3.929 7 N -0.887 5.887 8 Si 0.906 3.094 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.274 1.274 12 S -0.180 6.180 13 C -0.132 4.132 14 C -0.088 4.088 15 C -0.161 4.161 16 C -0.095 4.095 17 C -0.192 4.192 18 C 0.221 3.779 19 N -0.741 5.741 20 C 0.098 3.902 21 C 0.090 3.910 22 H 0.105 0.895 23 C -0.181 4.181 24 O -0.556 6.556 25 H 0.089 0.911 26 H 0.040 0.960 27 H 0.019 0.981 28 H 0.266 0.734 29 H 0.133 0.867 30 H 0.115 0.885 31 H 0.113 0.887 32 H 0.114 0.886 33 H 0.408 0.592 34 H 0.058 0.942 35 H 0.064 0.936 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.060 0.940 39 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.847 -2.341 17.877 18.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.027 4.027 3 H 0.068 0.932 4 C -0.550 4.550 5 H 0.084 0.916 6 C -0.133 4.133 7 N -0.525 5.525 8 Si 0.733 3.267 9 H -0.200 1.200 10 H -0.211 1.211 11 H -0.199 1.199 12 S 0.066 5.934 13 C -0.248 4.248 14 C -0.113 4.113 15 C -0.183 4.183 16 C -0.117 4.117 17 C -0.217 4.217 18 C 0.114 3.886 19 N -0.374 5.374 20 C -0.028 4.028 21 C 0.031 3.969 22 H 0.123 0.877 23 C -0.239 4.239 24 O -0.361 6.361 25 H 0.108 0.892 26 H 0.059 0.941 27 H 0.038 0.962 28 H 0.075 0.925 29 H 0.150 0.850 30 H 0.133 0.867 31 H 0.131 0.869 32 H 0.132 0.868 33 H 0.246 0.754 34 H 0.076 0.924 35 H 0.082 0.918 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.079 0.921 39 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 2.074 -3.836 17.482 18.018 hybrid contribution -0.104 1.088 -0.670 1.282 sum 1.969 -2.748 16.812 17.149 Atomic orbital electron populations 1.22080 0.96375 1.01359 0.99958 1.21038 0.95498 0.97257 0.88902 0.93231 1.20607 1.32502 1.13162 0.88697 0.91609 1.24882 0.94678 0.94946 0.98811 1.69870 1.35914 1.22552 1.24142 0.86423 0.79337 0.79671 0.81297 1.19985 1.21060 1.19945 1.84979 1.76173 1.30678 1.01583 1.21458 1.08650 0.99430 0.95312 1.21248 0.97647 0.92197 1.00240 1.20794 1.05077 0.99790 0.92589 1.20738 0.99202 0.95614 0.96136 1.20384 1.08969 0.95257 0.97058 1.17318 0.94137 0.85800 0.91382 1.44617 1.71143 1.15229 1.06383 1.21982 1.00342 0.95900 0.84532 1.22141 0.85239 0.95551 0.93994 0.87743 1.22423 1.02940 1.02491 0.96065 1.86656 1.21287 1.68649 1.59544 0.89244 0.94105 0.96190 0.92451 0.84955 0.86742 0.86857 0.86800 0.75412 0.92424 0.91840 0.91287 0.91335 0.92083 0.77793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.34 8.38 37.16 0.31 -3.03 16 2 C 0.10 2.54 1.97 -27.88 -0.06 2.48 16 3 H 0.05 1.34 6.83 -51.92 -0.35 0.98 16 4 C -0.51 -13.98 8.58 -34.44 -0.30 -14.27 16 5 H 0.07 1.82 7.71 -52.49 -0.40 1.41 16 6 C 0.07 1.92 5.30 -17.82 -0.09 1.82 16 7 N -0.89 -24.54 11.39 55.43 0.63 -23.91 16 8 Si 0.91 21.04 29.54 -169.99 -5.02 16.01 16 9 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 10 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 12 S -0.18 -4.01 19.75 -107.50 -2.12 -6.14 16 13 C -0.13 -2.63 5.99 -38.92 -0.23 -2.86 16 14 C -0.09 -1.71 8.06 -39.40 -0.32 -2.03 16 15 C -0.16 -2.64 10.04 -39.56 -0.40 -3.03 16 16 C -0.10 -1.39 10.04 -39.55 -0.40 -1.79 16 17 C -0.19 -2.87 9.31 -39.41 -0.37 -3.24 16 18 C 0.22 3.81 6.66 -83.50 -0.56 3.26 16 19 N -0.74 -11.13 5.63 -58.44 -0.33 -11.46 16 20 C 0.10 1.04 4.56 -4.04 -0.02 1.02 16 21 C 0.09 0.85 3.62 -26.73 -0.10 0.76 16 22 H 0.10 1.08 8.14 -51.93 -0.42 0.65 16 23 C -0.18 -1.21 9.53 37.16 0.35 -0.86 16 24 O -0.56 -6.14 13.29 -35.23 -0.47 -6.61 16 25 H 0.09 2.31 6.26 -51.93 -0.33 1.99 16 26 H 0.04 0.99 8.14 -51.93 -0.42 0.56 16 27 H 0.02 0.43 6.16 -51.93 -0.32 0.11 16 28 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 29 H 0.13 2.77 4.99 -52.49 -0.26 2.51 16 30 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 31 H 0.11 1.31 8.06 -52.49 -0.42 0.89 16 32 H 0.11 1.39 6.74 -52.48 -0.35 1.04 16 33 H 0.41 6.75 7.02 -40.82 -0.29 6.47 16 34 H 0.06 0.56 7.95 -51.93 -0.41 0.15 16 35 H 0.06 0.62 7.95 -51.93 -0.41 0.21 16 36 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 39 H 0.37 2.85 9.05 45.56 0.41 3.27 16 LS Contribution 328.75 15.07 4.95 4.95 Total: -1.00 -29.51 328.75 -9.33 -38.84 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: -4.81 Total: 10.08 kcal Atomic # 6 Polarization: -19.61 SS G_CDS: -2.16 Total: -21.78 kcal Atomic # 7 Polarization: -35.67 SS G_CDS: 0.30 Total: -35.37 kcal Atomic # 8 Polarization: -6.14 SS G_CDS: -0.47 Total: -6.61 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.01 kcal Atomic # 16 Polarization: -4.01 SS G_CDS: -2.12 Total: -6.14 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -29.51 -9.33 -38.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579464060.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.860 kcal (2) G-P(sol) polarization free energy of solvation -29.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds