Wall clock time and date at job start Tue Mar 31 2020 06:41:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09004 * 109.46794 * 2 1 4 4 C 1.50700 * 109.47007 * 239.99887 * 2 1 3 5 5 H 1.07997 * 119.99979 * 239.99309 * 4 2 1 6 6 C 1.37878 * 120.00228 * 60.00189 * 4 2 1 7 7 N 1.31516 * 119.99859 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00126 * 179.97438 * 6 4 2 9 9 H 1.48494 * 109.47216 * 60.00139 * 8 6 4 10 10 H 1.48500 * 109.46939 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.47118 * 299.99457 * 8 6 4 12 12 S 1.81399 * 109.47291 * 119.99774 * 2 1 3 13 13 C 1.76200 * 102.99857 * 289.52820 * 12 2 1 14 14 C 1.38731 * 120.10312 * 354.35322 * 13 12 2 15 15 C 1.38248 * 119.99324 * 180.28116 * 14 13 12 16 16 C 1.38274 * 120.19700 * 359.72867 * 15 14 13 17 17 C 1.38283 * 120.20135 * 359.97438 * 16 15 14 18 18 C 1.38645 * 120.01038 * 0.02562 * 17 16 15 19 19 N 1.39999 * 120.10411 * 179.97438 * 18 17 16 20 20 C 1.46506 * 119.99784 * 0.02562 * 19 18 17 21 21 C 1.53000 * 109.47132 * 179.97438 * 20 19 18 22 22 H 1.08996 * 109.47198 * 305.00127 * 21 20 19 23 23 C 1.53003 * 109.47102 * 185.00034 * 21 20 19 24 24 O 1.42906 * 109.46945 * 65.00117 * 21 20 19 25 25 H 1.09004 * 109.47051 * 53.73221 * 1 2 3 26 26 H 1.08995 * 109.46738 * 173.73333 * 1 2 3 27 27 H 1.08992 * 109.47078 * 293.73302 * 1 2 3 28 28 H 0.96996 * 120.00444 * 180.02562 * 7 6 4 29 29 H 1.08000 * 120.00603 * 0.02562 * 14 13 12 30 30 H 1.07996 * 119.90434 * 179.74170 * 15 14 13 31 31 H 1.07998 * 119.89933 * 180.02562 * 16 15 14 32 32 H 1.08007 * 119.99469 * 180.02562 * 17 16 15 33 33 H 0.96998 * 120.00742 * 180.02562 * 19 18 17 34 34 H 1.08999 * 109.47025 * 299.99951 * 20 19 18 35 35 H 1.09002 * 109.46896 * 59.99938 * 20 19 18 36 36 H 1.08994 * 109.47159 * 59.99961 * 23 21 20 37 37 H 1.09001 * 109.46712 * 180.02562 * 23 21 20 38 38 H 1.08996 * 109.47170 * 300.00110 * 23 21 20 39 39 H 0.96704 * 113.99825 * 59.99967 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6534 -1.5884 -1.1314 6 6 1.6993 -0.2394 -2.4828 7 7 0.9429 0.8296 -2.6034 8 14 2.3226 -1.1196 -4.0079 9 1 1.8281 -2.5198 -4.0082 10 1 1.8270 -0.4200 -5.2204 11 1 3.8076 -1.1190 -4.0077 12 16 2.1348 -0.8551 1.4811 13 6 1.7258 0.2638 2.7794 14 6 1.1967 1.5113 2.4820 15 6 0.8820 2.3896 3.5022 16 6 1.0879 2.0268 4.8205 17 6 1.6092 0.7831 5.1264 18 6 1.9277 -0.1044 4.1100 19 7 2.4561 -1.3639 4.4175 20 6 2.6727 -1.7460 5.8151 21 6 3.2530 -3.1605 5.8731 22 1 2.5988 -3.8441 5.3320 23 6 3.3628 -3.6074 7.3323 24 8 4.5503 -3.1680 5.2737 25 1 -0.3633 0.6079 -0.8286 26 1 -0.3632 -1.0215 -0.1122 27 1 -0.3633 0.4136 0.9407 28 1 0.7082 1.1608 -3.4844 29 1 1.0343 1.7978 1.4534 30 1 0.4741 3.3619 3.2688 31 1 0.8400 2.7166 5.6137 32 1 1.7682 0.5030 6.1574 33 1 2.6788 -1.9836 3.7053 34 1 3.3694 -1.0478 6.2789 35 1 1.7232 -1.7210 6.3499 36 1 2.3734 -3.6016 7.7894 37 1 3.7767 -4.6149 7.3735 38 1 4.0170 -2.9238 7.8734 39 1 5.1862 -2.5808 5.7049 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000579464060.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:40 Heat of formation + Delta-G solvation = -56.992733 kcal Electronic energy + Delta-G solvation = -19487.228672 eV Core-core repulsion = 16519.435760 eV Total energy + Delta-G solvation = -2967.792913 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -40.30320 -38.78868 -36.31122 -35.75073 -32.75604 -32.41543 -31.46620 -29.91494 -27.39814 -26.54386 -23.93681 -23.50484 -22.58077 -22.16269 -19.16551 -18.07996 -17.83261 -17.45460 -17.01017 -16.87707 -16.23978 -15.76737 -15.26038 -15.03783 -14.84252 -14.74020 -14.48517 -14.16900 -13.74291 -13.59503 -13.27859 -13.11076 -12.93774 -12.85907 -12.76776 -12.49908 -12.37732 -12.16192 -11.80388 -11.56032 -11.34848 -11.09682 -10.97882 -10.77319 -10.50480 -10.36737 -8.77078 -8.24898 -7.81121 -6.41209 0.45321 0.72438 1.00399 1.40685 1.42319 1.51076 1.96706 2.37423 2.54374 2.95319 3.04649 3.50665 3.73602 4.00240 4.11045 4.20970 4.27386 4.51884 4.58483 4.61595 4.62047 4.62560 4.81300 4.81985 4.84326 4.88066 5.04838 5.14606 5.27280 5.30336 5.32720 5.51045 5.56723 5.71376 5.74671 5.98965 6.00804 6.47774 6.60695 6.70407 6.84215 7.25840 8.81230 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.018174 B = 0.004688 C = 0.003842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.295658 B = 5970.794171 C = 7285.740374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.101 3.899 3 H 0.021 0.979 4 C -0.535 4.535 5 H 0.056 0.944 6 C 0.027 3.973 7 N -0.910 5.910 8 Si 0.969 3.031 9 H -0.270 1.270 10 H -0.276 1.276 11 H -0.271 1.271 12 S -0.194 6.194 13 C -0.166 4.166 14 C -0.107 4.107 15 C -0.170 4.170 16 C -0.077 4.077 17 C -0.187 4.187 18 C 0.219 3.781 19 N -0.745 5.745 20 C 0.095 3.905 21 C 0.092 3.908 22 H 0.089 0.911 23 C -0.172 4.172 24 O -0.580 6.580 25 H 0.069 0.931 26 H 0.032 0.968 27 H 0.033 0.967 28 H 0.269 0.731 29 H 0.103 0.897 30 H 0.134 0.866 31 H 0.157 0.843 32 H 0.151 0.849 33 H 0.397 0.603 34 H 0.075 0.925 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.066 0.934 38 H 0.075 0.925 39 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.986 -2.231 20.661 20.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.027 4.027 3 H 0.039 0.961 4 C -0.574 4.574 5 H 0.075 0.925 6 C -0.175 4.175 7 N -0.548 5.548 8 Si 0.793 3.207 9 H -0.195 1.195 10 H -0.201 1.201 11 H -0.196 1.196 12 S 0.051 5.949 13 C -0.283 4.283 14 C -0.132 4.132 15 C -0.191 4.191 16 C -0.098 4.098 17 C -0.211 4.211 18 C 0.110 3.890 19 N -0.375 5.375 20 C -0.029 4.029 21 C 0.032 3.968 22 H 0.107 0.893 23 C -0.230 4.230 24 O -0.388 6.388 25 H 0.088 0.912 26 H 0.051 0.949 27 H 0.052 0.948 28 H 0.078 0.922 29 H 0.121 0.879 30 H 0.152 0.848 31 H 0.174 0.826 32 H 0.169 0.831 33 H 0.232 0.768 34 H 0.093 0.907 35 H 0.098 0.902 36 H 0.099 0.901 37 H 0.085 0.915 38 H 0.094 0.906 39 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 2.216 -3.717 20.318 20.773 hybrid contribution -0.136 1.107 -1.350 1.752 sum 2.081 -2.609 18.967 19.259 Atomic orbital electron populations 1.21852 0.95931 1.00304 0.99789 1.20754 0.95795 0.95852 0.90308 0.96123 1.20873 1.33024 1.13310 0.90197 0.92540 1.25693 0.94655 0.95565 1.01562 1.69981 1.36421 1.23468 1.24908 0.85448 0.78816 0.78680 0.77802 1.19471 1.20055 1.19574 1.84702 1.77148 1.31577 1.01507 1.21439 1.11948 0.99439 0.95450 1.21161 0.99097 0.93082 0.99867 1.21054 1.05131 1.00087 0.92875 1.21238 0.96455 0.95918 0.96178 1.20823 1.07515 0.94682 0.98085 1.17569 0.93763 0.87026 0.90689 1.44866 1.70372 1.14240 1.08030 1.22261 1.01632 0.96819 0.82148 1.22151 0.84365 0.94701 0.95543 0.89281 1.22337 1.04042 1.02621 0.93964 1.86624 1.22234 1.69312 1.60644 0.91247 0.94895 0.94821 0.92197 0.87858 0.84804 0.82554 0.83122 0.76751 0.90669 0.90209 0.90079 0.91538 0.90559 0.76248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.06 8.38 71.98 0.60 -5.45 16 2 C 0.10 5.38 1.97 29.85 0.06 5.44 16 3 H 0.02 1.20 6.83 -2.39 -0.02 1.19 16 4 C -0.54 -30.55 8.58 25.60 0.22 -30.33 16 5 H 0.06 3.25 7.71 -2.91 -0.02 3.23 16 6 C 0.03 1.50 5.30 84.65 0.45 1.95 16 7 N -0.91 -51.88 11.39 21.45 0.24 -51.64 16 8 Si 0.97 43.80 29.54 68.60 2.03 45.82 16 9 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 10 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 11 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 12 S -0.19 -9.01 19.75 -56.49 -1.12 -10.13 16 13 C -0.17 -6.73 5.99 22.70 0.14 -6.59 16 14 C -0.11 -4.26 8.06 22.39 0.18 -4.08 16 15 C -0.17 -5.28 10.04 22.28 0.22 -5.05 16 16 C -0.08 -1.93 10.04 22.29 0.22 -1.71 16 17 C -0.19 -4.85 9.31 22.38 0.21 -4.64 16 18 C 0.22 7.20 6.66 38.25 0.25 7.46 16 19 N -0.74 -21.41 5.63 -338.81 -1.91 -23.32 16 20 C 0.10 1.75 4.56 86.38 0.39 2.14 16 21 C 0.09 1.57 3.62 30.60 0.11 1.68 16 22 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 23 C -0.17 -1.81 9.53 71.98 0.69 -1.12 16 24 O -0.58 -12.17 13.29 -148.98 -1.98 -14.15 16 25 H 0.07 3.77 6.26 -2.39 -0.01 3.76 16 26 H 0.03 1.66 8.14 -2.39 -0.02 1.64 16 27 H 0.03 1.56 6.16 -2.39 -0.01 1.54 16 28 H 0.27 14.44 8.31 -92.71 -0.77 13.66 16 29 H 0.10 4.62 4.99 -2.91 -0.01 4.61 16 30 H 0.13 3.54 8.06 -2.91 -0.02 3.52 16 31 H 0.16 2.64 8.06 -2.91 -0.02 2.62 16 32 H 0.15 2.81 6.74 -2.91 -0.02 2.79 16 33 H 0.40 13.18 7.02 -92.71 -0.65 12.53 16 34 H 0.08 1.15 7.95 -2.39 -0.02 1.14 16 35 H 0.08 1.25 7.95 -2.39 -0.02 1.23 16 36 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 37 H 0.07 0.75 8.14 -2.39 -0.02 0.74 16 38 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 39 H 0.39 5.29 9.05 -74.05 -0.67 4.62 16 Total: -1.00 -66.49 328.75 0.76 -65.73 By element: Atomic # 1 Polarization: 28.27 SS G_CDS: -0.26 Total: 28.01 kcal Atomic # 6 Polarization: -44.07 SS G_CDS: 3.75 Total: -40.32 kcal Atomic # 7 Polarization: -73.29 SS G_CDS: -1.66 Total: -74.96 kcal Atomic # 8 Polarization: -12.17 SS G_CDS: -1.98 Total: -14.15 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.82 kcal Atomic # 16 Polarization: -9.01 SS G_CDS: -1.12 Total: -10.13 kcal Total: -66.49 0.76 -65.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579464060.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.736 kcal (2) G-P(sol) polarization free energy of solvation -66.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.71 seconds