Wall clock time and date at job start Tue Mar 31 2020 06:41:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09007 * 109.47050 * 2 1 4 4 O 1.42899 * 109.47083 * 120.00213 * 2 1 3 5 5 C 1.53001 * 109.46960 * 240.00076 * 2 1 3 6 6 H 1.08999 * 109.47183 * 65.00864 * 5 2 1 7 7 C 1.53006 * 109.46935 * 184.99995 * 5 2 1 8 8 N 1.46491 * 109.47324 * 304.99717 * 5 2 1 9 9 C 1.40011 * 119.99970 * 154.99826 * 8 5 2 10 10 C 1.38642 * 120.09745 * 0.02821 * 9 8 5 11 11 C 1.38282 * 120.00072 * 179.97438 * 10 9 8 12 12 C 1.38269 * 120.20988 * 359.97438 * 11 10 9 13 13 C 1.38255 * 120.19230 * 0.02562 * 12 11 10 14 14 C 1.38721 * 119.99372 * 359.97438 * 13 12 11 15 15 S 1.76204 * 120.10251 * 180.02562 * 14 13 12 16 16 C 1.81408 * 102.99660 * 0.02562 * 15 14 13 17 17 C 1.50697 * 109.46731 * 180.02562 * 16 15 14 18 18 H 1.07994 * 120.00413 * 359.97438 * 17 16 15 19 19 C 1.37886 * 119.99796 * 180.02562 * 17 16 15 20 20 N 1.31519 * 119.99739 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00037 * 179.97438 * 19 17 16 22 22 H 1.48495 * 109.46951 * 59.99735 * 21 19 17 23 23 H 1.48495 * 109.46952 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47080 * 299.99765 * 21 19 17 25 25 H 1.09007 * 109.47244 * 60.00077 * 1 2 3 26 26 H 1.09001 * 109.47495 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47472 * 299.99758 * 1 2 3 28 28 H 0.96697 * 114.00077 * 299.99632 * 4 2 1 29 29 H 1.08996 * 109.46979 * 180.02562 * 7 5 2 30 30 H 1.09005 * 109.46978 * 300.00254 * 7 5 2 31 31 H 1.08997 * 109.47300 * 60.00040 * 7 5 2 32 32 H 0.96999 * 120.00366 * 335.00399 * 8 5 2 33 33 H 1.07997 * 119.99965 * 359.97438 * 10 9 8 34 34 H 1.08001 * 119.89555 * 180.02562 * 11 10 9 35 35 H 1.07996 * 119.90311 * 180.27979 * 12 11 10 36 36 H 1.07996 * 120.00071 * 180.02562 * 13 12 11 37 37 H 1.09002 * 109.46756 * 299.99607 * 16 15 14 38 38 H 1.08998 * 109.46984 * 59.99829 * 16 15 14 39 39 H 0.96999 * 119.99606 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 2.0399 -0.7212 -1.2493 6 1 1.7517 -0.1582 -2.1370 7 6 3.5648 -0.8310 -1.1880 8 7 1.4558 -2.0633 -1.3110 9 6 1.3244 -2.7135 -2.5440 10 6 1.7468 -2.0894 -3.7076 11 6 1.6164 -2.7336 -4.9243 12 6 1.0659 -4.0005 -4.9852 13 6 0.6420 -4.6307 -3.8299 14 6 0.7688 -3.9919 -2.6051 15 16 0.2300 -4.7927 -1.1308 16 6 -0.3942 -6.3848 -1.7361 17 6 -0.9007 -7.2001 -0.5744 18 1 -0.8516 -6.8008 0.4278 19 6 -1.4258 -8.4566 -0.7908 20 7 -1.4852 -8.9431 -2.0113 21 14 -2.0530 -9.4676 0.6493 22 1 -3.1494 -8.7328 1.3297 23 1 -2.5640 -10.7708 0.1538 24 1 -0.9445 -9.7026 1.6090 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.7210 -0.2702 1.9979 29 1 3.9281 -1.3444 -2.0782 30 1 3.9994 0.1676 -1.1420 31 1 3.8532 -1.3940 -0.3003 32 1 1.1601 -2.5014 -0.4977 33 1 2.1776 -1.1000 -3.6640 34 1 1.9465 -2.2460 -5.8297 35 1 0.9707 -4.5009 -5.9374 36 1 0.2128 -5.6204 -3.8810 37 1 -1.2080 -6.2119 -2.4404 38 1 0.4104 -6.9242 -2.2358 39 1 -1.8550 -9.8268 -2.1636 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000579948259.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:17 Heat of formation + Delta-G solvation = -38.841674 kcal Electronic energy + Delta-G solvation = -19601.637535 eV Core-core repulsion = 16634.631711 eV Total energy + Delta-G solvation = -2967.005824 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.35030 -37.92049 -35.17474 -33.20081 -31.73898 -30.63910 -29.81924 -28.49515 -27.84057 -23.95888 -23.26547 -22.63204 -21.53957 -20.09698 -17.98740 -17.18780 -16.30440 -16.19003 -15.80118 -14.89171 -14.66513 -14.36570 -14.21150 -13.87212 -13.49527 -13.24382 -12.89068 -12.75356 -12.55965 -12.41630 -12.30076 -12.07724 -11.91479 -11.51209 -11.41409 -10.88834 -10.86128 -10.77122 -10.63961 -10.20744 -9.91429 -9.79475 -9.63532 -9.07049 -8.98328 -8.57675 -7.39737 -6.25151 -6.21652 -4.26736 1.79006 2.03505 2.62510 3.27088 3.30405 3.34479 3.58928 3.85729 4.06159 4.27286 4.33687 4.56220 4.82266 4.97606 5.15633 5.16087 5.33367 5.41520 5.45831 5.54995 5.60681 5.65503 5.81034 5.87118 5.94496 6.08527 6.15207 6.32823 6.36892 6.59139 6.79116 7.03291 7.04775 7.07751 7.24917 7.46373 7.69594 7.71754 7.96553 8.09133 8.74030 9.36551 10.89621 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.017330 B = 0.004783 C = 0.003931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.300565 B = 5852.767567 C = 7120.336868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.095 3.905 3 H 0.063 0.937 4 O -0.560 6.560 5 C 0.159 3.841 6 H 0.085 0.915 7 C -0.165 4.165 8 N -0.732 5.732 9 C 0.227 3.773 10 C -0.194 4.194 11 C -0.094 4.094 12 C -0.162 4.162 13 C -0.088 4.088 14 C -0.138 4.138 15 S -0.177 6.177 16 C 0.078 3.922 17 C -0.517 4.517 18 H 0.067 0.933 19 C 0.068 3.932 20 N -0.890 5.890 21 Si 0.908 3.092 22 H -0.274 1.274 23 H -0.285 1.285 24 H -0.273 1.273 25 H 0.065 0.935 26 H 0.073 0.927 27 H 0.056 0.944 28 H 0.377 0.623 29 H 0.058 0.942 30 H 0.055 0.945 31 H 0.068 0.932 32 H 0.409 0.591 33 H 0.116 0.884 34 H 0.113 0.887 35 H 0.114 0.886 36 H 0.129 0.871 37 H 0.042 0.958 38 H 0.042 0.958 39 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.285 18.339 -0.332 19.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.035 3.965 3 H 0.081 0.919 4 O -0.365 6.365 5 C 0.053 3.947 6 H 0.103 0.897 7 C -0.224 4.224 8 N -0.365 5.365 9 C 0.118 3.882 10 C -0.218 4.218 11 C -0.115 4.115 12 C -0.183 4.183 13 C -0.113 4.113 14 C -0.254 4.254 15 S 0.067 5.933 16 C -0.069 4.069 17 C -0.556 4.556 18 H 0.085 0.915 19 C -0.137 4.137 20 N -0.528 5.528 21 Si 0.734 3.266 22 H -0.199 1.199 23 H -0.210 1.210 24 H -0.199 1.199 25 H 0.084 0.916 26 H 0.092 0.908 27 H 0.075 0.925 28 H 0.224 0.776 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.087 0.913 32 H 0.247 0.753 33 H 0.134 0.866 34 H 0.131 0.869 35 H 0.132 0.868 36 H 0.147 0.853 37 H 0.060 0.940 38 H 0.060 0.940 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 6.556 18.280 0.334 19.423 hybrid contribution -0.771 -0.833 -0.044 1.136 sum 5.786 17.447 0.290 18.383 Atomic orbital electron populations 1.22492 0.95891 1.03918 1.02142 1.22072 0.93363 0.94950 0.86082 0.91919 1.86576 1.76663 1.57578 1.15702 1.20888 0.93371 0.84461 0.95959 0.89719 1.22204 0.95408 1.01615 1.03148 1.44746 1.68718 1.16567 1.06428 1.17319 0.94569 0.90041 0.86223 1.20424 1.09179 1.00741 0.91465 1.20744 0.99213 0.95023 0.96549 1.20777 1.03801 0.96064 0.97678 1.21173 0.99015 0.99960 0.91201 1.21487 1.08376 0.96927 0.98652 1.84962 1.75849 1.21968 1.10483 1.21294 0.98545 0.87182 0.99846 1.20595 1.41875 1.00342 0.92837 0.91508 1.24948 0.95266 0.97111 0.96336 1.69942 1.44763 1.18067 1.20012 0.86397 0.79320 0.78988 0.81872 1.19901 1.21000 1.19872 0.91625 0.90796 0.92462 0.77606 0.92268 0.92556 0.91299 0.75308 0.86570 0.86853 0.86757 0.85314 0.93994 0.93978 0.92353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.82 9.32 37.15 0.35 -1.48 16 2 C 0.09 0.91 3.37 -26.73 -0.09 0.82 16 3 H 0.06 0.47 8.14 -51.92 -0.42 0.05 16 4 O -0.56 -5.86 12.17 -35.23 -0.43 -6.29 16 5 C 0.16 1.83 2.18 -67.93 -0.15 1.68 16 6 H 0.09 0.88 6.49 -51.93 -0.34 0.54 16 7 C -0.17 -1.85 9.24 37.16 0.34 -1.51 16 8 N -0.73 -11.05 4.43 -51.98 -0.23 -11.28 16 9 C 0.23 3.87 6.65 -83.49 -0.56 3.32 16 10 C -0.19 -2.87 8.86 -39.42 -0.35 -3.22 16 11 C -0.09 -1.36 10.04 -39.55 -0.40 -1.76 16 12 C -0.16 -2.65 10.04 -39.56 -0.40 -3.04 16 13 C -0.09 -1.72 9.36 -39.40 -0.37 -2.09 16 14 C -0.14 -2.75 6.12 -38.92 -0.24 -2.99 16 15 S -0.18 -3.96 20.37 -107.50 -2.19 -6.15 16 16 C 0.08 2.05 4.09 36.00 0.15 2.19 16 17 C -0.52 -14.53 9.13 -34.44 -0.31 -14.85 16 18 H 0.07 1.86 7.71 -52.49 -0.40 1.46 16 19 C 0.07 1.89 5.46 -17.81 -0.10 1.80 16 20 N -0.89 -25.79 13.29 55.43 0.74 -25.05 16 21 Si 0.91 21.30 29.54 -169.99 -5.02 16.28 16 22 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 24 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 25 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 26 H 0.07 0.92 7.13 -51.93 -0.37 0.55 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.38 2.39 9.08 45.56 0.41 2.80 16 29 H 0.06 0.71 7.72 -51.93 -0.40 0.31 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.89 7.56 -51.93 -0.39 0.50 16 32 H 0.41 6.81 6.41 -40.82 -0.26 6.55 16 33 H 0.12 1.42 6.12 -52.49 -0.32 1.10 16 34 H 0.11 1.31 8.06 -52.49 -0.42 0.88 16 35 H 0.11 1.63 8.06 -52.49 -0.42 1.20 16 36 H 0.13 2.70 5.88 -52.49 -0.31 2.39 16 37 H 0.04 1.14 7.75 -51.92 -0.40 0.74 16 38 H 0.04 1.15 7.75 -51.93 -0.40 0.75 16 39 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 331.54 15.07 5.00 5.00 Total: -1.00 -30.44 331.54 -9.11 -39.55 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: -4.86 Total: 9.06 kcal Atomic # 6 Polarization: -19.01 SS G_CDS: -2.12 Total: -21.13 kcal Atomic # 7 Polarization: -36.83 SS G_CDS: 0.51 Total: -36.33 kcal Atomic # 8 Polarization: -5.86 SS G_CDS: -0.43 Total: -6.29 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 16 Polarization: -3.96 SS G_CDS: -2.19 Total: -6.15 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -30.44 -9.11 -39.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579948259.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.713 kcal (2) G-P(sol) polarization free energy of solvation -30.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds