Wall clock time and date at job start Tue Mar 31 2020 06:41:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 N 1.46505 * 109.47212 * 120.00008 * 2 1 3 5 5 C 1.40003 * 119.99806 * 275.00236 * 4 2 1 6 6 C 1.38633 * 120.10222 * 359.72384 * 5 4 2 7 7 C 1.38292 * 120.00469 * 179.70374 * 6 5 4 8 8 C 1.38267 * 120.20277 * 0.59681 * 7 6 5 9 9 C 1.38253 * 120.19589 * 359.68133 * 8 7 6 10 10 C 1.38727 * 119.99470 * 0.02562 * 9 8 7 11 11 S 1.76193 * 120.10187 * 179.97438 * 10 9 8 12 12 C 1.81397 * 103.00012 * 0.02782 * 11 10 9 13 13 C 1.50699 * 109.47320 * 179.97438 * 12 11 10 14 14 H 1.08006 * 120.00126 * 359.97438 * 13 12 11 15 15 C 1.37878 * 120.00310 * 179.97438 * 13 12 11 16 16 N 1.31512 * 119.99586 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99945 * 179.97438 * 15 13 12 18 18 H 1.48492 * 109.47534 * 0.02562 * 17 15 13 19 19 H 1.48507 * 109.46666 * 120.00364 * 17 15 13 20 20 H 1.48498 * 109.47243 * 239.99808 * 17 15 13 21 21 C 1.53002 * 109.46817 * 240.00231 * 2 1 3 22 22 H 1.09008 * 109.46873 * 184.99985 * 21 2 1 23 23 C 1.52997 * 109.47469 * 64.99892 * 21 2 1 24 24 O 1.42899 * 109.47124 * 304.99658 * 21 2 1 25 25 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 26 26 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 27 27 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 28 28 H 0.97005 * 119.99239 * 94.99888 * 4 2 1 29 29 H 1.08001 * 119.99838 * 359.97438 * 6 5 4 30 30 H 1.07997 * 119.89867 * 180.27740 * 7 6 5 31 31 H 1.07996 * 119.90305 * 179.70219 * 8 7 6 32 32 H 1.08001 * 120.00070 * 180.02562 * 9 8 7 33 33 H 1.09004 * 109.47201 * 299.99693 * 12 11 10 34 34 H 1.08997 * 109.47375 * 59.99868 * 12 11 10 35 35 H 0.97006 * 119.99486 * 180.02562 * 16 15 13 36 36 H 1.09006 * 109.46918 * 59.99351 * 23 21 2 37 37 H 1.08988 * 109.47178 * 179.97438 * 23 21 2 38 38 H 1.08997 * 109.47151 * 300.00410 * 23 21 2 39 39 H 0.96698 * 113.99841 * 60.00342 * 24 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1520 0.0078 2.4022 6 6 1.8283 1.3543 2.4654 7 6 1.9552 2.0408 3.6592 8 6 2.4164 1.3914 4.7894 9 6 2.7471 0.0501 4.7344 10 6 2.6171 -0.6479 3.5426 11 16 3.0384 -2.3572 3.4692 12 6 3.5716 -2.7192 5.1648 13 6 3.9709 -4.1688 5.2672 14 1 3.9096 -4.8084 4.3991 15 6 4.4145 -4.6785 6.4690 16 7 4.4886 -3.8997 7.5262 17 14 4.9087 -6.4754 6.5960 18 1 4.7341 -7.1314 5.2753 19 1 6.3317 -6.5692 7.0106 20 1 4.0541 -7.1539 7.6031 21 6 2.0399 -0.7212 -1.2493 22 1 3.1263 -0.7995 -1.2057 23 6 1.6351 0.0689 -2.4954 24 8 1.4701 -2.0303 -1.3095 25 1 -0.3634 0.5137 0.8900 26 1 -0.3635 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 2.2490 -1.6318 1.1525 29 1 1.4727 1.8662 1.5834 30 1 1.6983 3.0887 3.7076 31 1 2.5182 1.9334 5.7179 32 1 3.1066 -0.4541 5.6192 33 1 4.4231 -2.0885 5.4204 34 1 2.7513 -2.5192 5.8542 35 1 4.8010 -4.2583 8.3717 36 1 2.0697 1.0676 -2.4494 37 1 1.9988 -0.4446 -3.3852 38 1 0.5489 0.1472 -2.5390 39 1 0.5041 -2.0373 -1.3504 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000579948260.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:20 Heat of formation + Delta-G solvation = -40.034898 kcal Electronic energy + Delta-G solvation = -19466.367628 eV Core-core repulsion = 16499.310062 eV Total energy + Delta-G solvation = -2967.057566 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.48110 -38.12791 -35.03884 -33.20691 -32.03340 -30.65297 -29.51913 -28.50641 -27.96485 -24.61705 -23.24212 -22.62614 -21.34764 -20.28462 -17.79925 -17.05979 -16.39469 -16.08230 -15.81038 -15.54242 -14.79462 -14.48285 -14.23935 -13.94651 -13.53914 -13.19644 -12.87645 -12.84794 -12.60274 -12.44816 -12.31154 -12.22753 -11.90943 -11.69955 -11.48362 -11.03905 -10.93343 -10.80551 -10.63158 -10.26164 -9.93193 -9.83769 -9.60795 -9.10171 -8.99061 -8.59348 -7.44561 -6.28136 -6.22525 -4.27398 1.75667 1.99715 2.60107 3.24022 3.31311 3.37549 3.50504 3.80453 4.20879 4.22592 4.33501 4.50691 4.74023 4.88611 5.00683 5.12910 5.15081 5.27242 5.32188 5.41519 5.50147 5.63029 5.67588 5.74141 5.81064 5.90247 6.08632 6.12172 6.33216 6.55334 6.75561 7.00129 7.03449 7.06480 7.21003 7.42508 7.64456 7.71440 7.95636 8.03404 8.74090 9.36192 10.88845 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.018378 B = 0.004469 C = 0.003686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.178352 B = 6263.700380 C = 7595.271204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.120 3.880 3 H 0.083 0.917 4 N -0.736 5.736 5 C 0.225 3.775 6 C -0.193 4.193 7 C -0.095 4.095 8 C -0.160 4.160 9 C -0.089 4.089 10 C -0.137 4.137 11 S -0.175 6.175 12 C 0.077 3.923 13 C -0.516 4.516 14 H 0.068 0.932 15 C 0.067 3.933 16 N -0.890 5.890 17 Si 0.907 3.093 18 H -0.269 1.269 19 H -0.281 1.281 20 H -0.281 1.281 21 C 0.094 3.906 22 H 0.105 0.895 23 C -0.183 4.183 24 O -0.557 6.557 25 H 0.065 0.935 26 H 0.063 0.937 27 H 0.061 0.939 28 H 0.409 0.591 29 H 0.116 0.884 30 H 0.114 0.886 31 H 0.115 0.885 32 H 0.130 0.870 33 H 0.042 0.958 34 H 0.042 0.958 35 H 0.266 0.734 36 H 0.067 0.933 37 H 0.066 0.934 38 H 0.063 0.937 39 H 0.373 0.627 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.394 11.419 -15.062 20.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.013 3.987 3 H 0.101 0.899 4 N -0.368 5.368 5 C 0.117 3.883 6 C -0.217 4.217 7 C -0.116 4.116 8 C -0.182 4.182 9 C -0.114 4.114 10 C -0.254 4.254 11 S 0.070 5.930 12 C -0.070 4.070 13 C -0.555 4.555 14 H 0.086 0.914 15 C -0.137 4.137 16 N -0.528 5.528 17 Si 0.734 3.266 18 H -0.194 1.194 19 H -0.207 1.207 20 H -0.207 1.207 21 C 0.034 3.966 22 H 0.123 0.877 23 C -0.241 4.241 24 O -0.363 6.363 25 H 0.085 0.915 26 H 0.082 0.918 27 H 0.080 0.920 28 H 0.247 0.753 29 H 0.134 0.866 30 H 0.132 0.868 31 H 0.133 0.867 32 H 0.147 0.853 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.075 0.925 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -6.787 10.461 -15.909 20.214 hybrid contribution -0.182 -0.027 1.341 1.354 sum -6.969 10.434 -14.567 19.226 Atomic orbital electron populations 1.22367 0.96128 1.02589 1.02497 1.21513 0.94049 0.97323 0.85800 0.89876 1.44734 1.73191 1.12885 1.05999 1.17307 0.94944 0.90959 0.85062 1.20425 1.10073 0.92611 0.98614 1.20748 0.99483 0.98868 0.92533 1.20788 1.04384 0.94590 0.98403 1.21186 0.98961 0.94589 0.96666 1.21516 1.08976 0.99477 0.95398 1.85005 1.80990 1.01903 1.25116 1.21313 0.99136 1.00852 0.85692 1.20680 1.45231 0.93006 0.96612 0.91359 1.24951 0.94996 0.98658 0.95107 1.69961 1.46056 1.35871 1.00901 0.86285 0.78224 0.83696 0.78410 1.19381 1.20680 1.20678 1.22208 0.99063 0.82918 0.92373 0.87747 1.22503 1.02291 1.00989 0.98341 1.86642 1.25422 1.27526 1.96693 0.91548 0.91817 0.92012 0.75317 0.86598 0.86829 0.86710 0.85261 0.93958 0.93967 0.92462 0.91369 0.91451 0.91838 0.77883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.60 8.78 37.16 0.33 -1.27 16 2 C 0.12 1.26 2.14 -67.93 -0.15 1.11 16 3 H 0.08 0.82 6.48 -51.93 -0.34 0.48 16 4 N -0.74 -10.79 5.18 -51.98 -0.27 -11.06 16 5 C 0.23 3.79 6.65 -83.50 -0.56 3.23 16 6 C -0.19 -2.80 8.87 -39.42 -0.35 -3.15 16 7 C -0.09 -1.36 10.04 -39.55 -0.40 -1.75 16 8 C -0.16 -2.59 10.04 -39.57 -0.40 -2.99 16 9 C -0.09 -1.72 9.36 -39.40 -0.37 -2.09 16 10 C -0.14 -2.71 6.12 -38.92 -0.24 -2.95 16 11 S -0.17 -3.90 20.37 -107.50 -2.19 -6.09 16 12 C 0.08 2.01 4.09 36.01 0.15 2.16 16 13 C -0.52 -14.50 9.13 -34.44 -0.31 -14.82 16 14 H 0.07 1.92 7.71 -52.48 -0.40 1.51 16 15 C 0.07 1.88 5.46 -17.82 -0.10 1.78 16 16 N -0.89 -25.76 13.29 55.43 0.74 -25.03 16 17 Si 0.91 21.33 29.54 -169.99 -5.02 16.31 16 18 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 19 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 21 C 0.09 0.90 3.49 -26.73 -0.09 0.81 16 22 H 0.10 1.12 8.14 -51.92 -0.42 0.70 16 23 C -0.18 -1.25 9.29 37.16 0.35 -0.91 16 24 O -0.56 -6.12 12.97 -35.23 -0.46 -6.58 16 25 H 0.07 0.69 7.76 -51.93 -0.40 0.29 16 26 H 0.06 0.42 6.57 -51.93 -0.34 0.08 16 27 H 0.06 0.56 6.72 -51.93 -0.35 0.21 16 28 H 0.41 6.69 6.93 -40.82 -0.28 6.41 16 29 H 0.12 1.38 6.15 -52.49 -0.32 1.06 16 30 H 0.11 1.28 8.06 -52.49 -0.42 0.86 16 31 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 32 H 0.13 2.69 5.88 -52.49 -0.31 2.38 16 33 H 0.04 1.15 7.75 -51.92 -0.40 0.75 16 34 H 0.04 1.15 7.75 -51.93 -0.40 0.75 16 35 H 0.27 7.20 8.31 -40.82 -0.34 6.87 16 36 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 37 H 0.07 0.47 8.14 -51.94 -0.42 0.04 16 38 H 0.06 0.36 6.56 -51.93 -0.34 0.02 16 39 H 0.37 2.96 7.19 45.56 0.33 3.28 16 LS Contribution 328.42 15.07 4.95 4.95 Total: -1.00 -30.33 328.42 -9.20 -39.54 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: -4.81 Total: 8.80 kcal Atomic # 6 Polarization: -18.70 SS G_CDS: -2.14 Total: -20.84 kcal Atomic # 7 Polarization: -36.56 SS G_CDS: 0.47 Total: -36.09 kcal Atomic # 8 Polarization: -6.12 SS G_CDS: -0.46 Total: -6.58 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 16 Polarization: -3.90 SS G_CDS: -2.19 Total: -6.09 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -30.33 -9.20 -39.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579948260.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.499 kcal (2) G-P(sol) polarization free energy of solvation -30.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds