Wall clock time and date at job start Tue Mar 31 2020 06:41:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 O 1.42898 * 109.47113 * 239.99870 * 2 1 3 5 5 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 6 6 H 1.08996 * 109.47853 * 300.00202 * 5 2 1 7 7 C 1.52999 * 109.47317 * 179.97438 * 5 2 1 8 8 N 1.46506 * 109.47289 * 60.00186 * 5 2 1 9 9 C 1.40000 * 120.00178 * 205.00008 * 8 5 2 10 10 C 1.38646 * 120.09908 * 359.72162 * 9 8 5 11 11 C 1.38286 * 120.00237 * 179.69968 * 10 9 8 12 12 C 1.38267 * 120.20402 * 0.60031 * 11 10 9 13 13 C 1.38242 * 120.20050 * 359.68053 * 12 11 10 14 14 C 1.38733 * 119.99078 * 0.02562 * 13 12 11 15 15 S 1.76196 * 120.10253 * 179.97438 * 14 13 12 16 16 C 1.81400 * 102.99920 * 0.02763 * 15 14 13 17 17 C 1.50704 * 109.47076 * 179.97438 * 16 15 14 18 18 H 1.07991 * 120.00317 * 359.97438 * 17 16 15 19 19 C 1.37882 * 119.99982 * 180.02562 * 17 16 15 20 20 N 1.31519 * 119.99941 * 359.97438 * 19 17 16 21 21 Si 1.86793 * 120.00013 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.46845 * 60.00152 * 21 19 17 23 23 H 1.48503 * 109.47044 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47387 * 299.99828 * 21 19 17 25 25 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 26 26 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 27 27 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 28 28 H 0.96698 * 113.99898 * 299.99778 * 4 2 1 29 29 H 1.09002 * 109.46716 * 60.00091 * 7 5 2 30 30 H 1.09000 * 109.47486 * 180.02562 * 7 5 2 31 31 H 1.09001 * 109.47362 * 300.00732 * 7 5 2 32 32 H 0.97004 * 119.99411 * 25.00097 * 8 5 2 33 33 H 1.07996 * 119.99647 * 0.02562 * 10 9 8 34 34 H 1.08003 * 119.89616 * 180.32459 * 11 10 9 35 35 H 1.08002 * 119.89965 * 179.70012 * 12 11 10 36 36 H 1.07996 * 120.01019 * 180.02562 * 13 12 11 37 37 H 1.09003 * 109.47233 * 299.99809 * 16 15 14 38 38 H 1.08997 * 109.47241 * 60.00022 * 16 15 14 39 39 H 0.96990 * 119.99893 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6737 -1.1667 5 6 2.0399 -0.7212 1.2493 6 1 1.6766 -0.2075 2.1393 7 6 3.5699 -0.7218 1.2491 8 7 1.5516 -2.1025 1.2493 9 6 1.4178 -2.7977 2.4571 10 6 1.7524 -2.1829 3.6540 11 6 1.6136 -2.8693 4.8464 12 6 1.1533 -4.1731 4.8490 13 6 0.8228 -4.7962 3.6600 14 6 0.9531 -4.1133 2.4595 15 16 0.5334 -4.9049 0.9424 16 6 -0.0007 -6.5541 1.4768 17 6 -0.4000 -7.3675 0.2726 18 1 -0.3390 -6.9355 -0.7153 19 6 -0.8441 -8.6630 0.4322 20 7 -0.9188 -9.1890 1.6353 21 14 -1.3397 -9.6710 -1.0603 22 1 -0.1793 -9.8000 -1.9779 23 1 -1.7768 -11.0211 -0.6228 24 1 -2.4565 -8.9934 -1.7667 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.7210 -1.5952 -1.2328 29 1 3.9336 0.3057 1.2488 30 1 3.9332 -1.2360 2.1388 31 1 3.9330 -1.2359 0.3591 32 1 1.3210 -2.5353 0.4124 33 1 2.1164 -1.1661 3.6554 34 1 1.8697 -2.3869 5.7782 35 1 1.0514 -4.7062 5.7827 36 1 0.4632 -5.8146 3.6657 37 1 0.8190 -7.0510 1.9958 38 1 -0.8528 -6.4597 2.1498 39 1 -1.2309 -10.1005 1.7475 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000579948261.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:25 Heat of formation + Delta-G solvation = -40.034958 kcal Electronic energy + Delta-G solvation = -19642.482024 eV Core-core repulsion = 16675.424456 eV Total energy + Delta-G solvation = -2967.057568 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.55358 -38.04997 -34.99158 -33.24686 -31.81109 -30.69948 -29.87487 -28.55393 -28.00210 -23.95694 -23.32251 -22.70073 -21.77243 -20.24789 -18.03437 -17.01834 -16.54610 -16.15321 -15.53342 -15.17575 -14.82704 -14.44348 -14.14291 -14.05307 -13.66419 -13.23401 -13.04617 -12.92369 -12.51278 -12.35125 -12.19871 -12.13035 -11.91070 -11.70427 -11.52312 -10.95496 -10.91692 -10.90270 -10.68904 -10.23311 -9.98506 -9.84798 -9.68755 -9.14658 -9.08533 -8.62257 -7.51061 -6.35549 -6.26025 -4.31624 1.71360 1.95010 2.52751 3.24163 3.27886 3.31480 3.43338 3.75025 4.15228 4.19285 4.29934 4.52264 4.80913 4.94490 5.11408 5.13736 5.28256 5.32707 5.38031 5.51935 5.59078 5.70345 5.75860 5.80435 5.86829 6.01891 6.07631 6.20403 6.29125 6.49662 6.71313 6.96099 6.98638 7.01694 7.14475 7.38092 7.58120 7.66563 7.86498 7.91057 8.69060 9.32141 10.85166 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.017468 B = 0.004790 C = 0.003947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1602.564260 B = 5844.100937 C = 7093.008081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.097 3.903 3 H 0.107 0.893 4 O -0.559 6.559 5 C 0.118 3.882 6 H 0.084 0.916 7 C -0.164 4.164 8 N -0.739 5.739 9 C 0.226 3.774 10 C -0.189 4.189 11 C -0.094 4.094 12 C -0.159 4.159 13 C -0.089 4.089 14 C -0.136 4.136 15 S -0.182 6.182 16 C 0.081 3.919 17 C -0.519 4.519 18 H 0.067 0.933 19 C 0.068 3.932 20 N -0.890 5.890 21 Si 0.908 3.092 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.273 1.273 25 H 0.065 0.935 26 H 0.063 0.937 27 H 0.067 0.933 28 H 0.376 0.624 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.065 0.935 32 H 0.399 0.601 33 H 0.117 0.883 34 H 0.114 0.886 35 H 0.115 0.885 36 H 0.130 0.870 37 H 0.042 0.958 38 H 0.042 0.958 39 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.966 16.770 2.437 17.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.038 3.962 3 H 0.125 0.875 4 O -0.365 6.365 5 C 0.012 3.988 6 H 0.102 0.898 7 C -0.223 4.223 8 N -0.372 5.372 9 C 0.119 3.881 10 C -0.213 4.213 11 C -0.116 4.116 12 C -0.180 4.180 13 C -0.114 4.114 14 C -0.253 4.253 15 S 0.063 5.937 16 C -0.066 4.066 17 C -0.558 4.558 18 H 0.085 0.915 19 C -0.136 4.136 20 N -0.527 5.527 21 Si 0.734 3.266 22 H -0.199 1.199 23 H -0.210 1.210 24 H -0.199 1.199 25 H 0.084 0.916 26 H 0.082 0.918 27 H 0.086 0.914 28 H 0.224 0.776 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.236 0.764 33 H 0.135 0.865 34 H 0.132 0.868 35 H 0.133 0.867 36 H 0.148 0.852 37 H 0.061 0.939 38 H 0.060 0.940 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 5.258 17.712 1.226 18.517 hybrid contribution -0.705 -1.832 0.591 2.050 sum 4.553 15.880 1.818 16.620 Atomic orbital electron populations 1.22488 0.95855 1.03559 1.02528 1.22220 0.93489 0.96495 0.84034 0.87548 1.86564 1.77085 1.29312 1.43528 1.21584 0.94470 0.83609 0.99133 0.89819 1.22202 0.95373 1.01735 1.03005 1.44664 1.73711 1.12658 1.06174 1.17239 0.95047 0.89472 0.86345 1.20449 1.09484 1.00256 0.91147 1.20767 0.99372 0.94601 0.96850 1.20802 1.04244 0.95538 0.97429 1.21185 0.98914 1.00038 0.91239 1.21487 1.09077 0.95985 0.98737 1.84807 1.81195 1.18748 1.08993 1.21297 0.99119 0.85889 1.00310 1.20584 1.45634 0.97359 0.92239 0.91485 1.24946 0.94929 0.97175 0.96574 1.69935 1.45791 1.15523 1.21463 0.86394 0.79178 0.78887 0.82102 1.19856 1.20976 1.19869 0.91568 0.91814 0.91430 0.77600 0.92244 0.92195 0.91622 0.76406 0.86465 0.86759 0.86669 0.85244 0.93933 0.93951 0.92296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.81 9.38 37.16 0.35 -1.46 16 2 C 0.10 0.94 3.41 -26.73 -0.09 0.85 16 3 H 0.11 0.88 8.14 -51.93 -0.42 0.45 16 4 O -0.56 -6.31 12.66 -35.23 -0.45 -6.76 16 5 C 0.12 1.24 2.11 -67.93 -0.14 1.09 16 6 H 0.08 0.82 6.50 -51.93 -0.34 0.48 16 7 C -0.16 -1.70 9.28 37.16 0.34 -1.35 16 8 N -0.74 -9.89 4.47 -51.98 -0.23 -10.12 16 9 C 0.23 3.61 6.65 -83.50 -0.56 3.06 16 10 C -0.19 -2.67 8.84 -39.41 -0.35 -3.02 16 11 C -0.09 -1.31 10.04 -39.55 -0.40 -1.71 16 12 C -0.16 -2.50 10.04 -39.57 -0.40 -2.89 16 13 C -0.09 -1.66 9.36 -39.40 -0.37 -2.03 16 14 C -0.14 -2.58 6.12 -38.92 -0.24 -2.82 16 15 S -0.18 -3.82 20.37 -107.50 -2.19 -6.01 16 16 C 0.08 2.04 4.09 36.01 0.15 2.19 16 17 C -0.52 -14.21 9.13 -34.44 -0.31 -14.52 16 18 H 0.07 1.81 7.71 -52.49 -0.40 1.41 16 19 C 0.07 1.87 5.46 -17.82 -0.10 1.78 16 20 N -0.89 -25.34 13.29 55.43 0.74 -24.61 16 21 Si 0.91 20.93 29.54 -169.99 -5.02 15.91 16 22 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 23 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 24 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 25 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.07 0.76 7.45 -51.93 -0.39 0.38 16 28 H 0.38 3.86 7.51 45.56 0.34 4.21 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.67 7.69 -51.93 -0.40 0.27 16 31 H 0.06 0.76 7.68 -51.93 -0.40 0.36 16 32 H 0.40 5.55 5.49 -40.82 -0.22 5.33 16 33 H 0.12 1.37 6.10 -52.49 -0.32 1.05 16 34 H 0.11 1.26 8.06 -52.48 -0.42 0.84 16 35 H 0.12 1.57 8.06 -52.49 -0.42 1.15 16 36 H 0.13 2.62 5.88 -52.49 -0.31 2.31 16 37 H 0.04 1.13 7.75 -51.92 -0.40 0.73 16 38 H 0.04 1.12 7.75 -51.93 -0.40 0.72 16 39 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 330.03 15.07 4.97 4.97 Total: -1.00 -28.99 330.03 -9.20 -38.19 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: -4.91 Total: 9.26 kcal Atomic # 6 Polarization: -18.72 SS G_CDS: -2.11 Total: -20.83 kcal Atomic # 7 Polarization: -35.24 SS G_CDS: 0.50 Total: -34.73 kcal Atomic # 8 Polarization: -6.31 SS G_CDS: -0.45 Total: -6.76 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Atomic # 16 Polarization: -3.82 SS G_CDS: -2.19 Total: -6.01 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -28.99 -9.20 -38.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579948261.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.842 kcal (2) G-P(sol) polarization free energy of solvation -28.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds