Wall clock time and date at job start Tue Mar 31 2020 06:41:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09002 * 109.47112 * 2 1 4 4 O 1.42900 * 109.47455 * 120.00140 * 2 1 3 5 5 C 1.53006 * 109.47477 * 240.00519 * 2 1 3 6 6 H 1.08996 * 109.46849 * 54.99905 * 5 2 1 7 7 C 1.53001 * 109.46548 * 294.99595 * 5 2 1 8 8 N 1.46502 * 109.46955 * 174.99690 * 5 2 1 9 9 C 1.40001 * 119.99432 * 204.99416 * 8 5 2 10 10 C 1.38641 * 120.10370 * 0.02562 * 9 8 5 11 11 C 1.38284 * 120.00814 * 179.97438 * 10 9 8 12 12 C 1.38275 * 120.20418 * 359.97438 * 11 10 9 13 13 C 1.38247 * 120.19312 * 0.02562 * 12 11 10 14 14 C 1.38723 * 119.99821 * 359.97438 * 13 12 11 15 15 S 1.76201 * 120.10569 * 179.97438 * 14 13 12 16 16 C 1.81406 * 102.99578 * 0.02768 * 15 14 13 17 17 C 1.50703 * 109.46497 * 179.97438 * 16 15 14 18 18 H 1.07991 * 120.00559 * 359.97438 * 17 16 15 19 19 C 1.37882 * 119.99579 * 180.02562 * 17 16 15 20 20 N 1.31518 * 119.99739 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 119.99946 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47078 * 59.99987 * 21 19 17 23 23 H 1.48507 * 109.47088 * 179.97438 * 21 19 17 24 24 H 1.48496 * 109.47274 * 300.00000 * 21 19 17 25 25 H 1.09003 * 109.47100 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47438 * 300.00007 * 1 2 3 27 27 H 1.09005 * 109.47533 * 59.99980 * 1 2 3 28 28 H 0.96693 * 114.00180 * 60.00052 * 4 2 1 29 29 H 1.09004 * 109.46902 * 179.97438 * 7 5 2 30 30 H 1.08990 * 109.47376 * 299.99859 * 7 5 2 31 31 H 1.08999 * 109.47103 * 60.00118 * 7 5 2 32 32 H 0.97001 * 120.00330 * 24.99950 * 8 5 2 33 33 H 1.07997 * 119.99882 * 359.95077 * 10 9 8 34 34 H 1.08004 * 119.90268 * 180.02562 * 11 10 9 35 35 H 1.07996 * 119.90390 * 179.72504 * 12 11 10 36 36 H 1.08007 * 120.00114 * 180.02562 * 13 12 11 37 37 H 1.09002 * 109.47084 * 299.99551 * 16 15 14 38 38 H 1.08996 * 109.46935 * 60.00132 * 16 15 14 39 39 H 0.97007 * 119.99770 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 1.1667 5 6 2.0400 -0.7211 -1.2493 6 1 1.6054 -0.2616 -2.1370 7 6 1.6353 -2.1954 -1.1880 8 7 3.5001 -0.6176 -1.3110 9 6 4.1569 -0.7104 -2.5438 10 6 3.4277 -0.8998 -3.7077 11 6 4.0784 -0.9906 -4.9245 12 6 5.4564 -0.8927 -4.9854 13 6 6.1918 -0.7039 -3.8301 14 6 5.5474 -0.6116 -2.6051 15 16 6.4819 -0.3717 -1.1307 16 6 8.1909 -0.3116 -1.7362 17 6 9.1285 -0.1067 -0.5743 18 1 8.7356 -0.0206 0.4279 19 6 10.4879 -0.0279 -0.7910 20 7 10.9661 -0.1311 -2.0118 21 14 11.6500 0.2269 0.6490 22 1 11.5041 -0.8977 1.6078 23 1 13.0491 0.2760 0.1534 24 1 11.3208 1.5044 1.3308 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 1.7211 -1.5952 1.2329 29 1 1.9983 -2.7091 -2.0783 30 1 2.0699 -2.6549 -0.3004 31 1 0.5490 -2.2723 -1.1421 32 1 4.0117 -0.4849 -0.4976 33 1 2.3514 -0.9767 -3.6640 34 1 3.5087 -1.1377 -5.8301 35 1 5.9599 -0.9688 -5.9378 36 1 7.2679 -0.6274 -3.8814 37 1 8.4321 -1.2492 -2.2371 38 1 8.2984 0.5142 -2.4394 39 1 11.9226 -0.0760 -2.1642 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000579948262.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:31 Heat of formation + Delta-G solvation = -39.974875 kcal Electronic energy + Delta-G solvation = -19466.182804 eV Core-core repulsion = 16499.127841 eV Total energy + Delta-G solvation = -2967.054963 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 2.02 seconds Orbital eigenvalues (eV) -39.48123 -38.12772 -35.03918 -33.20357 -32.03347 -30.65274 -29.51831 -28.50382 -27.96576 -24.61610 -23.23816 -22.62494 -21.34691 -20.28560 -17.79863 -17.05921 -16.39081 -16.08085 -15.81008 -15.54141 -14.79744 -14.48282 -14.24182 -13.94603 -13.54194 -13.19527 -12.87394 -12.84729 -12.60221 -12.44692 -12.29915 -12.22633 -11.90925 -11.69832 -11.48754 -11.04209 -10.88636 -10.83327 -10.64127 -10.26192 -9.92754 -9.83764 -9.63962 -9.09847 -8.99413 -8.58245 -7.44559 -6.28086 -6.22003 -4.27137 1.75729 1.99736 2.60172 3.27383 3.30535 3.34822 3.50515 3.80427 4.20864 4.22627 4.33702 4.50656 4.74030 4.88639 5.00777 5.12853 5.15351 5.27231 5.32164 5.41536 5.50150 5.63064 5.67577 5.74112 5.81048 5.90284 6.08633 6.12156 6.33251 6.55371 6.75609 7.00173 7.03680 7.06516 7.21027 7.42524 7.64478 7.71273 7.95905 8.03433 8.73761 9.36295 10.89257 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.018378 B = 0.004469 C = 0.003686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.169845 B = 6263.699896 C = 7595.272789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.094 3.906 3 H 0.105 0.895 4 O -0.557 6.557 5 C 0.120 3.880 6 H 0.083 0.917 7 C -0.177 4.177 8 N -0.736 5.736 9 C 0.225 3.775 10 C -0.193 4.193 11 C -0.095 4.095 12 C -0.160 4.160 13 C -0.089 4.089 14 C -0.137 4.137 15 S -0.175 6.175 16 C 0.078 3.922 17 C -0.517 4.517 18 H 0.067 0.933 19 C 0.068 3.932 20 N -0.890 5.890 21 Si 0.908 3.092 22 H -0.273 1.273 23 H -0.285 1.285 24 H -0.273 1.273 25 H 0.063 0.937 26 H 0.066 0.934 27 H 0.067 0.933 28 H 0.373 0.627 29 H 0.066 0.934 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.409 0.591 33 H 0.116 0.884 34 H 0.114 0.886 35 H 0.115 0.885 36 H 0.130 0.870 37 H 0.042 0.958 38 H 0.042 0.958 39 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.092 -2.216 -1.501 20.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.034 3.966 3 H 0.123 0.877 4 O -0.363 6.363 5 C 0.013 3.987 6 H 0.101 0.899 7 C -0.236 4.236 8 N -0.368 5.368 9 C 0.117 3.883 10 C -0.217 4.217 11 C -0.116 4.116 12 C -0.182 4.182 13 C -0.114 4.114 14 C -0.254 4.254 15 S 0.069 5.931 16 C -0.069 4.069 17 C -0.557 4.557 18 H 0.085 0.915 19 C -0.137 4.137 20 N -0.528 5.528 21 Si 0.734 3.266 22 H -0.199 1.199 23 H -0.210 1.210 24 H -0.199 1.199 25 H 0.082 0.918 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.221 0.779 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.247 0.753 33 H 0.134 0.866 34 H 0.132 0.868 35 H 0.133 0.867 36 H 0.147 0.853 37 H 0.060 0.940 38 H 0.060 0.940 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -20.120 -1.526 -0.273 20.180 hybrid contribution 1.042 -0.505 -0.654 1.329 sum -19.078 -2.030 -0.926 19.208 Atomic orbital electron populations 1.22504 0.95707 1.02858 1.03057 1.22207 0.93133 0.97066 0.84156 0.87747 1.86641 1.77169 1.29102 1.43373 1.21513 0.82274 0.95894 0.99003 0.89876 1.22368 1.00911 0.96958 1.03347 1.44731 1.04552 1.80947 1.06574 1.17309 0.89374 0.95422 0.86175 1.20425 0.98646 1.11190 0.91460 1.20750 0.94366 0.99971 0.96548 1.20789 0.93925 1.05750 0.97702 1.21184 1.00330 0.98700 0.91185 1.21515 0.94510 1.10589 0.98742 1.85005 1.07961 1.89805 1.10283 1.21302 0.85110 1.00614 0.99874 1.20599 0.90440 1.51806 0.92835 0.91468 1.24947 0.97807 0.94550 0.96351 1.69943 1.13944 1.48922 1.19999 0.86395 0.79229 0.79093 0.81853 1.19865 1.21000 1.19859 0.91840 0.91449 0.91368 0.77883 0.91542 0.92009 0.91822 0.75318 0.86598 0.86828 0.86708 0.85259 0.93974 0.93969 0.92346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.25 9.29 37.15 0.35 -0.91 16 2 C 0.09 0.90 3.48 -26.73 -0.09 0.81 16 3 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 4 O -0.56 -6.12 12.97 -35.23 -0.46 -6.58 16 5 C 0.12 1.26 2.14 -67.93 -0.15 1.11 16 6 H 0.08 0.82 6.49 -51.93 -0.34 0.48 16 7 C -0.18 -1.60 8.77 37.16 0.33 -1.27 16 8 N -0.74 -10.80 5.18 -51.98 -0.27 -11.07 16 9 C 0.22 3.79 6.65 -83.49 -0.56 3.23 16 10 C -0.19 -2.80 8.86 -39.42 -0.35 -3.15 16 11 C -0.09 -1.36 10.04 -39.55 -0.40 -1.75 16 12 C -0.16 -2.59 10.04 -39.56 -0.40 -2.99 16 13 C -0.09 -1.72 9.36 -39.40 -0.37 -2.09 16 14 C -0.14 -2.71 6.12 -38.92 -0.24 -2.95 16 15 S -0.18 -3.91 20.37 -107.50 -2.19 -6.10 16 16 C 0.08 2.03 4.09 36.01 0.15 2.18 16 17 C -0.52 -14.55 9.13 -34.44 -0.31 -14.87 16 18 H 0.07 1.88 7.71 -52.49 -0.40 1.47 16 19 C 0.07 1.90 5.46 -17.82 -0.10 1.80 16 20 N -0.89 -25.79 13.29 55.43 0.74 -25.05 16 21 Si 0.91 21.34 29.54 -169.99 -5.02 16.32 16 22 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 24 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 25 H 0.06 0.36 6.56 -51.93 -0.34 0.02 16 26 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 27 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.37 2.96 7.19 45.56 0.33 3.28 16 29 H 0.07 0.69 7.72 -51.93 -0.40 0.29 16 30 H 0.06 0.56 6.72 -51.93 -0.35 0.22 16 31 H 0.06 0.42 6.56 -51.93 -0.34 0.08 16 32 H 0.41 6.70 6.93 -40.82 -0.28 6.41 16 33 H 0.12 1.38 6.12 -52.49 -0.32 1.06 16 34 H 0.11 1.28 8.06 -52.48 -0.42 0.86 16 35 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 36 H 0.13 2.69 5.88 -52.48 -0.31 2.38 16 37 H 0.04 1.15 7.75 -51.92 -0.40 0.75 16 38 H 0.04 1.15 7.75 -51.93 -0.40 0.75 16 39 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 328.33 15.07 4.95 4.95 Total: -1.00 -30.29 328.33 -9.20 -39.49 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: -4.81 Total: 8.88 kcal Atomic # 6 Polarization: -18.71 SS G_CDS: -2.14 Total: -20.84 kcal Atomic # 7 Polarization: -36.58 SS G_CDS: 0.47 Total: -36.12 kcal Atomic # 8 Polarization: -6.12 SS G_CDS: -0.46 Total: -6.58 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 16 Polarization: -3.91 SS G_CDS: -2.19 Total: -6.10 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -30.29 -9.20 -39.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579948262.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.482 kcal (2) G-P(sol) polarization free energy of solvation -30.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.02 seconds