Wall clock time and date at job start Tue Mar 31 2020 06:21:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.46692 * 2 1 4 4 N 1.46500 * 109.47133 * 119.99629 * 2 1 3 5 5 C 1.34779 * 120.00165 * 275.00058 * 4 2 1 6 6 O 1.21282 * 119.99927 * 0.02562 * 5 4 2 7 7 C 1.50699 * 120.00033 * 179.97438 * 5 4 2 8 8 C 1.53006 * 109.46866 * 180.02562 * 7 5 4 9 9 C 1.52999 * 109.46623 * 179.97438 * 8 7 5 10 10 C 1.53006 * 109.46997 * 179.97438 * 9 8 7 11 11 C 1.50699 * 109.47240 * 180.02562 * 10 9 8 12 12 H 1.08003 * 119.99962 * 0.02562 * 11 10 9 13 13 C 1.37873 * 119.99861 * 179.97438 * 11 10 9 14 14 N 1.31522 * 120.00243 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99980 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.46921 * 60.00420 * 15 13 11 17 17 H 1.48506 * 109.46938 * 180.02562 * 15 13 11 18 18 H 1.48490 * 109.47056 * 300.00305 * 15 13 11 19 19 C 1.50695 * 109.47596 * 239.99956 * 2 1 3 20 20 C 1.38422 * 122.54098 * 99.99492 * 19 2 1 21 21 C 1.33392 * 114.92200 * 179.97438 * 20 19 2 22 22 S 1.75886 * 109.59035 * 0.02562 * 21 20 19 23 23 C 1.33388 * 122.53973 * 279.71161 * 19 2 1 24 24 H 1.09002 * 109.47323 * 300.00126 * 1 2 3 25 25 H 1.09001 * 109.47331 * 60.00393 * 1 2 3 26 26 H 1.09005 * 109.46692 * 179.97438 * 1 2 3 27 27 H 0.96996 * 119.99985 * 95.00633 * 4 2 1 28 28 H 1.08993 * 109.47512 * 60.00410 * 7 5 4 29 29 H 1.09000 * 109.47247 * 300.00119 * 7 5 4 30 30 H 1.09000 * 109.47050 * 299.99952 * 8 7 5 31 31 H 1.09001 * 109.46801 * 60.00064 * 8 7 5 32 32 H 1.09000 * 109.47486 * 299.99829 * 9 8 7 33 33 H 1.09001 * 109.47362 * 60.00551 * 9 8 7 34 34 H 1.09000 * 109.46866 * 300.00212 * 10 9 8 35 35 H 1.08996 * 109.47261 * 59.99820 * 10 9 8 36 36 H 0.96992 * 120.00032 * 179.97438 * 14 13 11 37 37 H 1.08002 * 122.53925 * 359.96042 * 20 19 2 38 38 H 1.07996 * 125.20547 * 179.97438 * 21 20 19 39 39 H 1.08007 * 125.20253 * 0.02562 * 23 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1470 -0.0181 2.3572 6 8 1.8581 1.1585 2.4117 7 6 2.6488 -0.7286 3.5878 8 6 2.6998 0.2545 4.7591 9 6 3.2086 -0.4670 6.0086 10 6 3.2602 0.5162 7.1798 11 6 3.7620 -0.1943 8.4105 12 1 4.0188 -1.2422 8.3620 13 6 3.8942 0.4937 9.5979 14 7 3.5818 1.7699 9.6568 15 14 4.5155 -0.3872 11.1236 16 1 5.8763 -0.9230 10.8660 17 1 4.5656 0.5672 12.2602 18 1 3.5979 -1.5060 11.4573 19 6 2.0324 -0.7104 -1.2304 20 6 2.4716 -0.0324 -2.3544 21 6 2.8840 -0.8116 -3.3555 22 16 2.7239 -2.5008 -2.8924 23 6 2.0928 -2.0401 -1.3168 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 2.2491 -1.6316 1.1527 28 1 3.6479 -1.1211 3.3988 29 1 1.9759 -1.5504 3.8327 30 1 3.3724 1.0766 4.5145 31 1 1.7004 0.6466 4.9480 32 1 2.5356 -1.2889 6.2531 33 1 4.2079 -0.8595 5.8200 34 1 3.9335 1.3377 6.9351 35 1 2.2612 0.9091 7.3687 36 1 3.6745 2.2538 10.4923 37 1 2.4795 1.0458 -2.4163 38 1 3.2580 -0.4592 -4.3053 39 1 1.7970 -2.7286 -0.5389 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588166409.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:10 Heat of formation + Delta-G solvation = -32.870274 kcal Electronic energy + Delta-G solvation = -18649.990765 eV Core-core repulsion = 15683.243880 eV Total energy + Delta-G solvation = -2966.746884 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.13093 -38.52420 -35.17900 -34.66321 -32.62978 -31.21149 -29.51458 -29.19561 -25.74866 -25.07062 -22.97408 -21.62357 -20.29281 -19.95172 -19.11416 -18.13655 -16.76100 -16.44842 -16.08383 -15.61228 -14.89988 -14.42835 -14.41766 -13.92125 -13.75054 -13.43854 -13.13607 -12.82204 -12.74156 -12.56435 -12.17193 -12.04155 -11.65622 -11.64466 -11.56297 -10.99279 -10.94663 -10.51972 -10.49817 -10.38165 -9.80557 -9.58588 -9.27286 -9.20560 -9.17710 -8.96936 -8.76680 -8.28196 -5.93112 -3.95674 0.59468 1.26163 1.58315 2.24193 2.75489 3.16573 3.36686 3.40951 3.43269 4.38739 4.50587 4.56629 4.84840 4.94862 5.00094 5.07949 5.21941 5.34943 5.40404 5.42451 5.47184 5.50739 5.71371 5.86839 5.92622 5.94853 6.07611 6.16976 6.33126 6.39621 6.58026 6.87061 7.05018 7.22678 7.44460 7.76136 7.92720 8.08458 8.28318 8.50144 9.11889 9.67771 11.18193 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.039941 B = 0.002342 C = 0.002270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.858832 B =11951.141743 C =12329.513251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.201 3.799 3 H 0.097 0.903 4 N -0.733 5.733 5 C 0.514 3.486 6 O -0.534 6.534 7 C -0.139 4.139 8 C -0.103 4.103 9 C -0.110 4.110 10 C 0.020 3.980 11 C -0.520 4.520 12 H 0.053 0.947 13 C 0.055 3.945 14 N -0.896 5.896 15 Si 0.892 3.108 16 H -0.277 1.277 17 H -0.288 1.288 18 H -0.277 1.277 19 C -0.104 4.104 20 C -0.125 4.125 21 C -0.210 4.210 22 S 0.100 5.900 23 C -0.208 4.208 24 H 0.068 0.932 25 H 0.065 0.935 26 H 0.057 0.943 27 H 0.397 0.603 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.046 0.954 33 H 0.046 0.954 34 H 0.016 0.984 35 H 0.016 0.984 36 H 0.260 0.740 37 H 0.143 0.857 38 H 0.166 0.834 39 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.894 -8.739 -28.368 29.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.094 3.906 3 H 0.115 0.885 4 N -0.387 5.387 5 C 0.302 3.698 6 O -0.409 6.409 7 C -0.179 4.179 8 C -0.141 4.141 9 C -0.148 4.148 10 C -0.017 4.017 11 C -0.559 4.559 12 H 0.072 0.928 13 C -0.146 4.146 14 N -0.535 5.535 15 Si 0.719 3.281 16 H -0.203 1.203 17 H -0.213 1.213 18 H -0.203 1.203 19 C -0.118 4.118 20 C -0.156 4.156 21 C -0.345 4.345 22 S 0.364 5.636 23 C -0.344 4.344 24 H 0.087 0.913 25 H 0.084 0.916 26 H 0.076 0.924 27 H 0.232 0.768 28 H 0.108 0.892 29 H 0.108 0.892 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.034 0.966 35 H 0.034 0.966 36 H 0.070 0.930 37 H 0.161 0.839 38 H 0.183 0.817 39 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -3.796 -9.110 -28.934 30.570 hybrid contribution 0.186 0.378 1.451 1.510 sum -3.611 -8.732 -27.483 29.062 Atomic orbital electron populations 1.22156 0.94166 1.02349 1.02849 1.19449 0.93997 0.96537 0.80649 0.88530 1.46249 1.68896 1.13979 1.09570 1.21105 0.76761 0.87501 0.84473 1.90704 1.49159 1.16164 1.84912 1.21800 1.02490 1.00471 0.93123 1.21450 1.02467 0.97238 0.92945 1.21651 0.99160 0.99243 0.94739 1.19093 0.97211 0.94132 0.91281 1.21249 1.43636 0.96269 0.94726 0.92825 1.25044 0.95704 0.94875 0.98962 1.69966 1.48762 1.08157 1.26610 0.86670 0.79373 0.79386 0.82623 1.20292 1.21324 1.20298 1.19046 1.02610 0.93053 0.97060 1.20065 1.01466 1.01503 0.92558 1.25625 1.09079 0.95769 1.04055 1.84337 1.62718 1.07216 1.09357 1.25403 1.09091 0.98640 1.01288 0.91345 0.91588 0.92391 0.76795 0.89170 0.89166 0.91800 0.91798 0.93501 0.93505 0.96597 0.96595 0.92996 0.83890 0.81685 0.81842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.42 9.47 37.16 0.35 -1.07 16 2 C 0.20 1.94 2.87 -69.09 -0.20 1.74 16 3 H 0.10 1.10 7.52 -51.93 -0.39 0.71 16 4 N -0.73 -7.42 5.04 -54.93 -0.28 -7.69 16 5 C 0.51 7.10 7.79 -10.99 -0.09 7.01 16 6 O -0.53 -9.57 15.64 5.56 0.09 -9.49 16 7 C -0.14 -1.85 5.70 -27.88 -0.16 -2.01 16 8 C -0.10 -1.86 4.50 -26.73 -0.12 -1.98 16 9 C -0.11 -2.29 5.15 -26.73 -0.14 -2.43 16 10 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 11 C -0.52 -15.12 9.11 -34.44 -0.31 -15.43 16 12 H 0.05 1.50 7.74 -52.48 -0.41 1.09 16 13 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 14 N -0.90 -27.72 13.29 55.43 0.74 -26.98 16 15 Si 0.89 22.04 29.54 -169.99 -5.02 17.02 16 16 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 17 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 18 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 19 C -0.10 -0.86 4.86 -106.25 -0.52 -1.38 16 20 C -0.13 -0.96 9.95 -41.21 -0.41 -1.37 16 21 C -0.21 -1.41 11.23 29.04 0.33 -1.08 16 22 S 0.10 0.66 23.34 -107.50 -2.51 -1.84 16 23 C -0.21 -1.50 10.21 29.04 0.30 -1.20 16 24 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.40 2.98 7.20 -40.82 -0.29 2.69 16 28 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 29 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 31 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 32 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.26 7.59 8.31 -40.82 -0.34 7.26 16 37 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 38 H 0.17 0.76 8.06 -52.49 -0.42 0.33 16 39 H 0.16 0.90 7.32 -52.48 -0.38 0.51 16 LS Contribution 343.12 15.07 5.17 5.17 Total: -1.00 -33.72 343.12 -9.12 -42.83 By element: Atomic # 1 Polarization: 4.36 SS G_CDS: -6.10 Total: -1.74 kcal Atomic # 6 Polarization: -16.07 SS G_CDS: -1.20 Total: -17.28 kcal Atomic # 7 Polarization: -35.13 SS G_CDS: 0.46 Total: -34.67 kcal Atomic # 8 Polarization: -9.57 SS G_CDS: 0.09 Total: -9.49 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Atomic # 16 Polarization: 0.66 SS G_CDS: -2.51 Total: -1.84 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -33.72 -9.12 -42.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588166409.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.963 kcal (2) G-P(sol) polarization free energy of solvation -33.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds