Wall clock time and date at job start Tue Mar 31 2020 06:41:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09007 * 109.46725 * 2 1 4 4 O 1.42899 * 109.47170 * 119.99503 * 2 1 3 5 5 C 1.52993 * 109.47348 * 240.00215 * 2 1 3 6 6 N 1.46497 * 109.47224 * 180.02562 * 5 2 1 7 7 C 1.40009 * 120.00101 * 179.97438 * 6 5 2 8 8 C 1.38649 * 120.09481 * 359.72312 * 7 6 5 9 9 C 1.38289 * 119.99713 * 179.70208 * 8 7 6 10 10 C 1.38268 * 120.20595 * 0.59558 * 9 8 7 11 11 C 1.38235 * 120.19840 * 359.68216 * 10 9 8 12 12 C 1.38730 * 119.99433 * 0.02562 * 11 10 9 13 13 S 1.76200 * 120.10220 * 179.97438 * 12 11 10 14 14 C 1.81402 * 103.00049 * 354.28542 * 13 12 11 15 15 H 1.09000 * 109.46905 * 52.12047 * 14 13 12 16 16 C 1.53001 * 109.47170 * 172.12402 * 14 13 12 17 17 C 1.50697 * 109.46951 * 292.11966 * 14 13 12 18 18 H 1.08001 * 120.00164 * 0.02562 * 17 14 13 19 19 C 1.37878 * 119.99752 * 179.97438 * 17 14 13 20 20 N 1.31510 * 120.00261 * 0.02562 * 19 17 14 21 21 Si 1.86801 * 119.99692 * 180.02562 * 19 17 14 22 22 H 1.48503 * 109.47062 * 90.00271 * 21 19 17 23 23 H 1.48505 * 109.47048 * 210.00035 * 21 19 17 24 24 H 1.48497 * 109.47577 * 330.00248 * 21 19 17 25 25 H 1.08997 * 109.46747 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47057 * 300.00022 * 1 2 3 27 27 H 1.09002 * 109.47033 * 60.00108 * 1 2 3 28 28 H 0.96706 * 113.99339 * 60.00235 * 4 2 1 29 29 H 1.09007 * 109.47032 * 299.99597 * 5 2 1 30 30 H 1.08997 * 109.47535 * 59.99414 * 5 2 1 31 31 H 0.96991 * 120.00188 * 359.97438 * 6 5 2 32 32 H 1.08000 * 120.00036 * 359.97438 * 8 7 6 33 33 H 1.08002 * 119.89678 * 180.31866 * 9 8 7 34 34 H 1.08001 * 119.89792 * 179.69783 * 10 9 8 35 35 H 1.07999 * 120.00587 * 179.97438 * 11 10 9 36 36 H 1.08997 * 109.47489 * 66.02460 * 16 14 13 37 37 H 1.08993 * 109.46965 * 186.03516 * 16 14 13 38 38 H 1.09006 * 109.46938 * 306.03231 * 16 14 13 39 39 H 0.97001 * 120.00277 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 8 2.0064 -0.6735 1.1668 5 6 2.0401 -0.7212 -1.2492 6 7 3.5050 -0.7217 -1.2489 7 6 4.2051 -1.3285 -2.2986 8 6 3.5139 -1.9344 -3.3366 9 6 4.2074 -2.5278 -4.3755 10 6 5.5901 -2.5299 -4.3773 11 6 6.2877 -1.9332 -3.3437 12 6 5.6003 -1.3303 -2.3003 13 16 6.4866 -0.5694 -0.9811 14 6 8.2118 -0.9889 -1.3532 15 1 8.4405 -0.7076 -2.3812 16 6 9.1379 -0.2319 -0.3991 17 6 8.4166 -2.4719 -1.1808 18 1 7.5913 -3.0994 -0.8781 19 6 9.6573 -3.0278 -1.4105 20 7 10.6620 -2.2638 -1.7796 21 14 9.9109 -4.8662 -1.1975 22 1 9.6388 -5.5558 -2.4842 23 1 11.3126 -5.1277 -0.7825 24 1 8.9831 -5.3766 -0.1564 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.7210 -1.5952 1.2329 29 1 1.6768 -1.7489 -1.2492 30 1 1.6767 -0.2074 -2.1392 31 1 3.9900 -0.3017 -0.5214 32 1 2.4339 -1.9392 -3.3359 33 1 3.6673 -2.9948 -5.1858 34 1 6.1267 -2.9990 -5.1887 35 1 7.3676 -1.9371 -3.3480 36 1 8.9835 -0.5909 0.6184 37 1 10.1748 -0.3994 -0.6902 38 1 8.9150 0.8341 -0.4459 39 1 11.5350 -2.6548 -1.9408 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591774009.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:55 Heat of formation + Delta-G solvation = -38.339356 kcal Electronic energy + Delta-G solvation = -19687.923647 eV Core-core repulsion = 16720.939606 eV Total energy + Delta-G solvation = -2966.984041 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.00498 -37.80254 -34.77198 -34.00810 -31.53990 -30.55155 -30.11370 -28.73332 -25.64530 -25.22270 -22.67736 -21.95710 -21.29153 -20.54974 -17.28843 -16.77378 -16.40556 -16.14831 -15.97245 -15.35378 -14.77638 -14.25732 -13.94154 -13.65196 -13.49014 -13.33486 -13.07777 -12.84072 -12.59853 -12.33351 -12.06784 -11.66402 -11.51370 -11.13030 -11.03671 -10.95627 -10.66046 -10.45422 -10.32397 -10.26201 -9.94598 -9.71182 -9.31115 -8.90100 -8.85156 -8.42968 -7.30797 -6.30936 -6.01944 -4.22137 1.95021 2.17978 2.76713 3.26121 3.32727 3.37590 3.59721 3.82651 4.26553 4.36752 4.42508 4.55973 4.82685 4.91749 5.17240 5.27923 5.37941 5.38483 5.51006 5.60869 5.74123 5.83857 5.89461 6.11499 6.25101 6.55757 6.65199 6.72541 6.77612 6.86863 6.95328 7.22200 7.35647 7.43276 7.46508 7.63012 7.76347 7.84691 8.06739 8.11899 8.79230 9.42258 10.90776 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.019117 B = 0.004976 C = 0.004515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.281059 B = 5626.037485 C = 6200.021056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.091 3.909 3 H 0.103 0.897 4 O -0.556 6.556 5 C 0.098 3.902 6 N -0.742 5.742 7 C 0.219 3.781 8 C -0.197 4.197 9 C -0.095 4.095 10 C -0.165 4.165 11 C -0.067 4.067 12 C -0.119 4.119 13 S -0.201 6.201 14 C 0.097 3.903 15 H 0.049 0.951 16 C -0.124 4.124 17 C -0.515 4.515 18 H 0.066 0.934 19 C 0.069 3.931 20 N -0.889 5.889 21 Si 0.896 3.104 22 H -0.279 1.279 23 H -0.285 1.285 24 H -0.272 1.272 25 H 0.060 0.940 26 H 0.067 0.933 27 H 0.068 0.932 28 H 0.376 0.624 29 H 0.056 0.944 30 H 0.063 0.937 31 H 0.407 0.593 32 H 0.112 0.888 33 H 0.111 0.889 34 H 0.113 0.887 35 H 0.145 0.855 36 H 0.039 0.961 37 H 0.097 0.903 38 H 0.019 0.981 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.459 2.671 -0.929 16.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.031 3.969 3 H 0.121 0.879 4 O -0.362 6.362 5 C -0.028 4.028 6 N -0.375 5.375 7 C 0.111 3.889 8 C -0.221 4.221 9 C -0.116 4.116 10 C -0.187 4.187 11 C -0.092 4.092 12 C -0.235 4.235 13 S 0.043 5.957 14 C -0.030 4.030 15 H 0.067 0.933 16 C -0.183 4.183 17 C -0.554 4.554 18 H 0.084 0.916 19 C -0.134 4.134 20 N -0.527 5.527 21 Si 0.724 3.276 22 H -0.205 1.205 23 H -0.211 1.211 24 H -0.197 1.197 25 H 0.079 0.921 26 H 0.086 0.914 27 H 0.087 0.913 28 H 0.223 0.777 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.245 0.755 32 H 0.130 0.870 33 H 0.129 0.871 34 H 0.131 0.869 35 H 0.162 0.838 36 H 0.058 0.942 37 H 0.115 0.885 38 H 0.038 0.962 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -16.517 3.944 0.139 16.982 hybrid contribution 0.524 -2.230 -0.918 2.468 sum -15.993 1.714 -0.779 16.104 Atomic orbital electron populations 1.22427 0.95621 1.02814 1.03077 1.22130 0.93197 0.97207 0.84341 0.87881 1.86638 1.77219 1.29135 1.43169 1.21949 0.82308 1.00180 0.98314 1.44562 1.03909 1.63948 1.25111 1.17343 0.89234 0.93646 0.88651 1.20326 0.98446 1.06946 0.96427 1.20736 0.94221 0.99168 0.97488 1.20822 0.93901 1.04105 0.99843 1.21429 1.01335 0.94729 0.91695 1.21105 0.93457 1.08260 1.00721 1.84448 1.10188 1.66616 1.34411 1.21051 0.84109 0.99061 0.98773 0.93277 1.21624 1.02759 0.95386 0.98563 1.21263 0.96222 0.90655 1.47232 0.91557 1.24953 0.95673 0.98269 0.94545 1.69870 1.01502 1.35158 1.46129 0.86499 0.77402 0.85018 0.78703 1.20456 1.21107 1.19695 0.92070 0.91381 0.91328 0.77686 0.92541 0.91923 0.75517 0.86997 0.87071 0.86874 0.83756 0.94198 0.88505 0.96184 0.92623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.26 9.53 37.16 0.35 -0.91 16 2 C 0.09 0.88 3.67 -26.73 -0.10 0.78 16 3 H 0.10 1.05 8.14 -51.92 -0.42 0.63 16 4 O -0.56 -6.37 13.08 -35.23 -0.46 -6.83 16 5 C 0.10 1.09 4.58 -4.05 -0.02 1.07 16 6 N -0.74 -11.53 5.58 -58.45 -0.33 -11.86 16 7 C 0.22 3.96 6.66 -83.49 -0.56 3.40 16 8 C -0.20 -3.16 9.31 -39.41 -0.37 -3.53 16 9 C -0.09 -1.51 10.04 -39.55 -0.40 -1.91 16 10 C -0.17 -2.99 10.04 -39.57 -0.40 -3.38 16 11 C -0.07 -1.43 8.80 -39.40 -0.35 -1.77 16 12 C -0.12 -2.49 6.05 -38.92 -0.24 -2.72 16 13 S -0.20 -4.44 19.77 -107.50 -2.13 -6.56 16 14 C 0.10 2.41 2.01 -27.88 -0.06 2.36 16 15 H 0.05 1.29 7.00 -51.92 -0.36 0.93 16 16 C -0.12 -2.94 8.88 37.16 0.33 -2.61 16 17 C -0.51 -13.71 6.90 -34.44 -0.24 -13.94 16 18 H 0.07 1.84 7.71 -52.49 -0.40 1.44 16 19 C 0.07 1.85 5.30 -17.82 -0.09 1.75 16 20 N -0.89 -24.25 11.39 55.43 0.63 -23.62 16 21 Si 0.90 21.05 29.54 -169.99 -5.02 16.03 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 23 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 24 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 25 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.38 3.15 9.05 45.56 0.41 3.56 16 29 H 0.06 0.59 7.94 -51.92 -0.41 0.18 16 30 H 0.06 0.65 7.97 -51.93 -0.41 0.23 16 31 H 0.41 6.86 6.89 -40.82 -0.28 6.58 16 32 H 0.11 1.48 6.74 -52.49 -0.35 1.13 16 33 H 0.11 1.43 8.06 -52.49 -0.42 1.01 16 34 H 0.11 1.83 8.06 -52.49 -0.42 1.41 16 35 H 0.14 3.39 5.09 -52.49 -0.27 3.12 16 36 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.10 2.47 6.26 -51.93 -0.32 2.14 16 38 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 LS Contribution 330.38 15.07 4.98 4.98 Total: -1.00 -28.85 330.38 -9.37 -38.22 By element: Atomic # 1 Polarization: 15.98 SS G_CDS: -4.93 Total: 11.06 kcal Atomic # 6 Polarization: -19.29 SS G_CDS: -2.12 Total: -21.41 kcal Atomic # 7 Polarization: -35.78 SS G_CDS: 0.31 Total: -35.48 kcal Atomic # 8 Polarization: -6.37 SS G_CDS: -0.46 Total: -6.83 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Atomic # 16 Polarization: -4.44 SS G_CDS: -2.13 Total: -6.56 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -28.85 -9.37 -38.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591774009.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.118 kcal (2) G-P(sol) polarization free energy of solvation -28.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds