Wall clock time and date at job start Tue Mar 31 2020 06:29:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34705 * 116.99355 * 2 1 4 4 O 1.21465 * 120.01033 * 0.02562 * 3 2 1 5 5 C 1.47743 * 119.99556 * 180.02562 * 3 2 1 6 6 C 1.39646 * 120.13534 * 359.97438 * 5 3 2 7 7 C 1.37929 * 119.89397 * 179.72156 * 6 5 3 8 8 C 1.38346 * 120.18275 * 0.57198 * 7 6 5 9 9 C 1.50699 * 119.86186 * 179.72137 * 8 7 6 10 10 N 1.46906 * 109.46990 * 259.72745 * 9 8 7 11 11 C 1.46902 * 110.99573 * 180.02562 * 10 9 8 12 12 H 1.08997 * 109.47515 * 325.00070 * 11 10 9 13 13 C 1.52999 * 109.47197 * 85.00442 * 11 10 9 14 14 C 1.50699 * 109.46726 * 204.99752 * 11 10 9 15 15 H 1.08006 * 120.00161 * 0.02562 * 14 11 10 16 16 C 1.37881 * 119.99813 * 180.02562 * 14 11 10 17 17 N 1.31507 * 120.00087 * 359.97438 * 16 14 11 18 18 Si 1.86801 * 119.99843 * 180.02562 * 16 14 11 19 19 H 1.48502 * 109.47505 * 59.99770 * 18 16 14 20 20 H 1.48498 * 109.47219 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.46977 * 299.99418 * 18 16 14 22 22 C 1.38558 * 120.27603 * 359.45136 * 8 7 6 23 23 F 1.35098 * 119.95250 * 180.27549 * 22 8 7 24 24 C 1.38196 * 120.09558 * 0.24671 * 22 8 7 25 25 H 1.09010 * 109.47063 * 299.99106 * 1 2 3 26 26 H 1.08997 * 109.47533 * 59.99591 * 1 2 3 27 27 H 1.09005 * 109.46632 * 180.02562 * 1 2 3 28 28 H 1.08000 * 120.05387 * 0.02562 * 6 5 3 29 29 H 1.08004 * 119.90572 * 180.29126 * 7 6 5 30 30 H 1.09002 * 109.47064 * 139.73022 * 9 8 7 31 31 H 1.09000 * 109.47099 * 19.72748 * 9 8 7 32 32 H 1.00896 * 111.00309 * 56.04484 * 10 9 8 33 33 H 1.09011 * 109.46887 * 299.99666 * 13 11 10 34 34 H 1.08999 * 109.47708 * 59.99506 * 13 11 10 35 35 H 1.09000 * 109.47499 * 180.02562 * 13 11 10 36 36 H 0.97004 * 120.00261 * 180.02562 * 17 16 14 37 37 H 1.08004 * 120.08484 * 180.02562 * 24 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0635 1.2003 0.0000 4 8 1.4020 2.2190 0.0005 5 6 3.5389 1.2777 -0.0006 6 6 4.3022 0.1083 -0.0006 7 6 5.6793 0.1864 -0.0069 8 6 6.3061 1.4197 -0.0013 9 6 7.8112 1.4965 -0.0020 10 7 8.2885 1.7614 1.3618 11 6 9.7547 1.8437 1.3996 12 1 10.1768 1.1397 0.6824 13 6 10.1954 3.2640 1.0400 14 6 10.2414 1.5024 2.7845 15 1 9.5324 1.2493 3.5589 16 6 11.5918 1.5132 3.0628 17 7 12.4551 1.8209 2.1197 18 14 12.1950 1.0895 4.7792 19 1 11.7680 -0.2894 5.1277 20 1 13.6772 1.1727 4.8175 21 1 11.6196 2.0479 5.7567 22 6 5.5559 2.5846 -0.0008 23 9 6.1748 3.7855 -0.0010 24 6 4.1755 2.5198 -0.0007 25 1 -0.3634 0.5137 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 3.8151 -0.8556 -0.0006 29 1 6.2699 -0.7179 -0.0117 30 1 8.1336 2.3013 -0.6626 31 1 8.2231 0.5506 -0.3538 32 1 7.9484 1.0633 2.0061 33 1 9.8433 3.5109 0.0383 34 1 9.7734 3.9680 1.7571 35 1 11.2833 3.3249 1.0675 36 1 13.4051 1.8282 2.3154 37 1 3.5909 3.4279 -0.0007 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596048071.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:22 Heat of formation + Delta-G solvation = -106.221691 kcal Electronic energy + Delta-G solvation = -21195.171323 eV Core-core repulsion = 17659.030507 eV Total energy + Delta-G solvation = -3536.140816 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.66413 -40.75313 -38.92849 -36.70883 -35.95994 -33.18381 -31.46671 -30.74391 -28.82487 -27.72447 -25.62974 -24.90400 -22.91733 -22.44544 -20.89501 -19.83270 -18.47675 -17.47016 -16.72588 -16.61832 -16.25735 -15.96252 -15.50061 -15.32392 -14.79373 -14.10843 -14.06261 -13.70664 -13.64315 -13.51503 -13.27626 -12.72288 -12.43551 -12.23591 -12.06892 -11.72523 -11.38165 -11.15696 -11.09873 -10.89903 -10.80772 -10.71189 -10.32547 -10.14961 -10.03454 -9.16547 -8.89580 -8.70703 -8.50380 -7.38282 -6.05717 -4.12649 0.43847 1.10425 2.29405 2.36672 3.29504 3.34203 3.36972 3.50403 4.26547 4.37566 4.44455 4.61796 4.79240 4.81575 4.88092 4.88396 5.11997 5.19485 5.25309 5.45100 5.56341 5.70699 5.90207 5.96198 6.00794 6.10561 6.13182 6.33598 6.71678 6.85216 7.11946 7.19096 7.43883 7.46835 7.73811 7.84606 8.22990 8.30172 8.57957 8.96360 9.53375 11.00518 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.029716 B = 0.003319 C = 0.003155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.034493 B = 8433.831571 C = 8873.273366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.354 6.354 3 C 0.514 3.486 4 O -0.506 6.506 5 C -0.112 4.112 6 C -0.073 4.073 7 C -0.102 4.102 8 C -0.065 4.065 9 C 0.090 3.910 10 N -0.680 5.680 11 C 0.213 3.787 12 H 0.003 0.997 13 C -0.125 4.125 14 C -0.521 4.521 15 H 0.060 0.940 16 C 0.063 3.937 17 N -0.890 5.890 18 Si 0.898 3.102 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.276 1.276 22 C 0.114 3.886 23 F -0.121 7.121 24 C -0.095 4.095 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.103 0.897 28 H 0.142 0.858 29 H 0.141 0.859 30 H 0.080 0.920 31 H 0.039 0.961 32 H 0.333 0.667 33 H 0.005 0.995 34 H 0.032 0.968 35 H 0.081 0.919 36 H 0.262 0.738 37 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.069 -5.126 -6.455 20.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.270 6.270 3 C 0.359 3.641 4 O -0.394 6.394 5 C -0.114 4.114 6 C -0.092 4.092 7 C -0.121 4.121 8 C -0.067 4.067 9 C -0.039 4.039 10 N -0.312 5.312 11 C 0.106 3.894 12 H 0.020 0.980 13 C -0.183 4.183 14 C -0.559 4.559 15 H 0.078 0.922 16 C -0.139 4.139 17 N -0.528 5.528 18 Si 0.726 3.274 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.202 1.202 22 C 0.094 3.906 23 F -0.099 7.099 24 C -0.114 4.114 25 H 0.083 0.917 26 H 0.082 0.918 27 H 0.121 0.879 28 H 0.160 0.840 29 H 0.159 0.841 30 H 0.099 0.901 31 H 0.057 0.943 32 H 0.150 0.850 33 H 0.024 0.976 34 H 0.052 0.948 35 H 0.100 0.900 36 H 0.072 0.928 37 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -19.127 -4.078 -6.538 20.621 hybrid contribution 0.496 -0.812 0.831 1.263 sum -18.631 -4.890 -5.707 20.090 Atomic orbital electron populations 1.23300 0.75842 1.03836 1.02715 1.86542 1.23635 1.32492 1.84336 1.21114 0.88968 0.81449 0.72593 1.90838 1.66785 1.36034 1.45784 1.18696 0.88920 0.94176 1.09561 1.21424 0.93675 0.97895 0.96161 1.21025 0.94075 0.97254 0.99718 1.20556 0.97852 0.91876 0.96403 1.20950 0.87305 1.00672 0.94977 1.60812 1.14558 1.52595 1.03204 1.19130 0.80098 0.93748 0.96376 0.97957 1.21722 1.03046 0.97672 0.95907 1.21205 0.91969 1.46885 0.95854 0.92209 1.24911 0.96740 0.95040 0.97227 1.69882 1.02092 1.48326 1.32511 0.86566 0.77492 0.78913 0.84457 1.20307 1.21285 1.20155 1.17229 0.89524 0.81268 1.02600 1.91568 1.82720 1.42200 1.93456 1.21134 0.92867 0.98305 0.99128 0.91731 0.91774 0.87872 0.84000 0.84104 0.90125 0.94277 0.85005 0.97634 0.94842 0.90032 0.92801 0.83516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.25 10.56 101.05 1.07 1.32 16 2 O -0.35 -3.56 9.82 -40.51 -0.40 -3.96 16 3 C 0.51 6.30 7.90 34.62 0.27 6.58 16 4 O -0.51 -7.33 16.14 -19.24 -0.31 -7.64 16 5 C -0.11 -1.37 5.87 -104.99 -0.62 -1.99 16 6 C -0.07 -0.78 9.62 -39.17 -0.38 -1.16 16 7 C -0.10 -1.20 9.65 -39.65 -0.38 -1.58 16 8 C -0.07 -0.95 5.40 -104.46 -0.56 -1.52 16 9 C 0.09 1.56 5.32 -4.97 -0.03 1.53 16 10 N -0.68 -14.21 6.29 -109.22 -0.69 -14.90 16 11 C 0.21 5.32 2.60 -68.86 -0.18 5.14 16 12 H 0.00 0.07 7.80 -51.93 -0.41 -0.33 16 13 C -0.13 -3.13 9.19 37.16 0.34 -2.78 16 14 C -0.52 -14.09 8.59 -34.44 -0.30 -14.39 16 15 H 0.06 1.59 7.62 -52.48 -0.40 1.19 16 16 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 17 N -0.89 -25.16 11.32 55.43 0.63 -24.54 16 18 Si 0.90 21.07 29.54 -169.99 -5.02 16.04 16 19 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 20 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 22 C 0.11 1.71 7.23 -39.48 -0.29 1.43 16 23 F -0.12 -2.07 16.64 2.25 0.04 -2.04 16 24 C -0.10 -1.28 9.57 -39.10 -0.37 -1.65 16 25 H 0.06 0.45 8.14 -51.92 -0.42 0.02 16 26 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.14 1.18 7.61 -52.49 -0.40 0.78 16 29 H 0.14 1.39 8.03 -52.48 -0.42 0.97 16 30 H 0.08 1.46 7.23 -51.93 -0.38 1.09 16 31 H 0.04 0.64 7.91 -51.93 -0.41 0.23 16 32 H 0.33 6.73 8.22 -39.29 -0.32 6.40 16 33 H 0.00 0.11 7.45 -51.92 -0.39 -0.28 16 34 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.08 2.20 6.07 -51.93 -0.32 1.89 16 36 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 37 H 0.15 1.88 7.65 -52.48 -0.40 1.47 16 LS Contribution 324.33 15.07 4.89 4.89 Total: -1.00 -30.31 324.33 -7.04 -37.35 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -4.66 Total: 2.23 kcal Atomic # 6 Polarization: -5.94 SS G_CDS: -1.51 Total: -7.45 kcal Atomic # 7 Polarization: -39.38 SS G_CDS: -0.06 Total: -39.44 kcal Atomic # 8 Polarization: -10.88 SS G_CDS: -0.71 Total: -11.59 kcal Atomic # 9 Polarization: -2.07 SS G_CDS: 0.04 Total: -2.04 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -30.31 -7.04 -37.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596048071.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.867 kcal (2) G-P(sol) polarization free energy of solvation -30.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds