Wall clock time and date at job start Tue Mar 31 2020 06:29:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34725 * 117.00265 * 2 1 4 4 O 1.21489 * 120.00091 * 359.97438 * 3 2 1 5 5 C 1.47561 * 120.00415 * 179.97438 * 3 2 1 6 6 C 1.39725 * 120.17036 * 359.97438 * 5 3 2 7 7 C 1.37837 * 119.87150 * 179.97438 * 6 5 3 8 8 C 1.38472 * 120.22697 * 0.26064 * 7 6 5 9 9 C 1.50693 * 119.82599 * 179.74315 * 8 7 6 10 10 N 1.46907 * 109.47125 * 89.99287 * 9 8 7 11 11 C 1.46905 * 110.99884 * 180.02562 * 10 9 8 12 12 H 1.08999 * 109.47085 * 34.99835 * 11 10 9 13 13 C 1.53002 * 109.46871 * 275.00472 * 11 10 9 14 14 C 1.50697 * 109.46771 * 155.00326 * 11 10 9 15 15 H 1.07996 * 120.00310 * 359.97438 * 14 11 10 16 16 C 1.37882 * 119.99619 * 180.02562 * 14 11 10 17 17 N 1.31513 * 120.00155 * 0.02562 * 16 14 11 18 18 Si 1.86797 * 119.99982 * 179.97438 * 16 14 11 19 19 H 1.48502 * 109.47033 * 90.00063 * 18 16 14 20 20 H 1.48497 * 109.47469 * 209.99777 * 18 16 14 21 21 H 1.48500 * 109.47327 * 330.00148 * 18 16 14 22 22 C 1.38208 * 120.35006 * 359.47858 * 8 7 6 23 23 C 1.38314 * 120.12038 * 0.51740 * 22 8 7 24 24 F 1.35104 * 120.11138 * 179.71959 * 23 22 8 25 25 H 1.09004 * 109.46552 * 60.00222 * 1 2 3 26 26 H 1.08997 * 109.47076 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47675 * 300.01090 * 1 2 3 28 28 H 1.07995 * 120.06381 * 359.95602 * 6 5 3 29 29 H 1.08002 * 119.88285 * 179.97438 * 7 6 5 30 30 H 1.08999 * 109.47399 * 209.99697 * 9 8 7 31 31 H 1.09002 * 109.46973 * 329.99543 * 9 8 7 32 32 H 1.00889 * 111.00062 * 303.95514 * 10 9 8 33 33 H 1.09006 * 109.46503 * 180.02562 * 13 11 10 34 34 H 1.08999 * 109.47182 * 299.99260 * 13 11 10 35 35 H 1.08995 * 109.47459 * 59.99890 * 13 11 10 36 36 H 0.97001 * 120.00279 * 180.02562 * 17 16 14 37 37 H 1.08002 * 119.94130 * 180.23863 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2004 0.0000 4 8 1.4020 2.2193 -0.0005 5 6 3.5372 1.2776 0.0006 6 6 4.3018 0.1081 0.0017 7 6 5.6778 0.1875 0.0016 8 6 6.3049 1.4220 0.0060 9 6 7.8099 1.4983 0.0118 10 7 8.3042 1.5251 -1.3713 11 6 9.7710 1.5988 -1.4048 12 1 10.1826 1.0281 -0.5723 13 6 10.2110 3.0596 -1.2885 14 6 10.2732 1.0248 -2.7045 15 1 9.5729 0.6430 -3.4326 16 6 11.6269 0.9860 -2.9637 17 7 12.4798 1.4496 -2.0764 18 14 12.2495 0.2738 -4.5744 19 1 12.3378 1.3525 -5.5912 20 1 13.5941 -0.3210 -4.3658 21 1 11.3116 -0.7761 -5.0468 22 6 5.5578 2.5848 -0.0004 23 6 4.1761 2.5220 -0.0005 24 9 3.4460 3.6588 -0.0011 25 1 -0.3632 0.5138 -0.8901 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5140 0.8898 28 1 3.8154 -0.8561 0.0028 29 1 6.2690 -0.7164 0.0029 30 1 8.1259 2.4046 0.5283 31 1 8.2158 0.6270 0.5259 32 1 7.9707 0.7266 -1.8900 33 1 11.2994 3.1142 -1.3139 34 1 9.7995 3.6303 -2.1210 35 1 9.8477 3.4748 -0.3485 36 1 13.4321 1.4227 -2.2588 37 1 6.0538 3.5442 -0.0009 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597084029.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:27 Heat of formation + Delta-G solvation = -106.519655 kcal Electronic energy + Delta-G solvation = -21121.474979 eV Core-core repulsion = 17585.321242 eV Total energy + Delta-G solvation = -3536.153737 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -48.92498 -40.60446 -39.05923 -36.60264 -35.95281 -33.19117 -31.56839 -30.68160 -28.83465 -27.73455 -25.66364 -24.92079 -22.90187 -22.46601 -20.90669 -19.87832 -18.22733 -17.48868 -16.93429 -16.62510 -16.49874 -16.05578 -15.54690 -15.07250 -14.81700 -14.41714 -13.86988 -13.79433 -13.58636 -13.51428 -13.37695 -12.68058 -12.41307 -12.18032 -11.97308 -11.83979 -11.52716 -11.16518 -11.03699 -10.91620 -10.80124 -10.61242 -10.36786 -10.20971 -10.06881 -9.13571 -8.91003 -8.83331 -8.53882 -7.43981 -6.09403 -4.16360 0.45314 1.10816 2.35726 2.42468 3.26335 3.33096 3.35554 3.49999 4.02988 4.34879 4.41775 4.63872 4.75289 4.84519 4.92367 5.02646 5.18461 5.21863 5.23979 5.42333 5.60353 5.65659 5.82978 5.96378 6.00575 6.09612 6.14463 6.48445 6.68277 6.79226 7.04942 7.12904 7.38215 7.53255 7.70486 7.79646 8.18096 8.24901 8.53336 8.92734 9.50054 10.96869 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.030169 B = 0.003201 C = 0.003045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.876715 B = 8745.963966 C = 9194.315197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.355 6.355 3 C 0.510 3.490 4 O -0.499 6.499 5 C -0.180 4.180 6 C -0.034 4.034 7 C -0.141 4.141 8 C 0.003 3.997 9 C 0.087 3.913 10 N -0.681 5.681 11 C 0.212 3.788 12 H 0.004 0.996 13 C -0.126 4.126 14 C -0.521 4.521 15 H 0.061 0.939 16 C 0.063 3.937 17 N -0.889 5.889 18 Si 0.898 3.102 19 H -0.280 1.280 20 H -0.287 1.287 21 H -0.274 1.274 22 C -0.148 4.148 23 C 0.164 3.836 24 F -0.118 7.118 25 H 0.063 0.937 26 H 0.103 0.897 27 H 0.063 0.937 28 H 0.145 0.855 29 H 0.138 0.862 30 H 0.080 0.920 31 H 0.040 0.960 32 H 0.334 0.666 33 H 0.082 0.918 34 H 0.032 0.968 35 H 0.005 0.995 36 H 0.262 0.738 37 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.889 -3.888 6.429 19.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.272 6.272 3 C 0.355 3.645 4 O -0.387 6.387 5 C -0.182 4.182 6 C -0.052 4.052 7 C -0.159 4.159 8 C 0.002 3.998 9 C -0.043 4.043 10 N -0.313 5.313 11 C 0.105 3.895 12 H 0.021 0.979 13 C -0.185 4.185 14 C -0.559 4.559 15 H 0.079 0.921 16 C -0.139 4.139 17 N -0.528 5.528 18 Si 0.726 3.274 19 H -0.206 1.206 20 H -0.213 1.213 21 H -0.199 1.199 22 C -0.167 4.167 23 C 0.144 3.856 24 F -0.096 7.096 25 H 0.082 0.918 26 H 0.121 0.879 27 H 0.082 0.918 28 H 0.163 0.837 29 H 0.156 0.844 30 H 0.098 0.902 31 H 0.058 0.942 32 H 0.151 0.849 33 H 0.100 0.900 34 H 0.052 0.948 35 H 0.024 0.976 36 H 0.072 0.928 37 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -18.013 -2.841 6.392 19.323 hybrid contribution 0.292 -0.944 -0.629 1.171 sum -17.720 -3.785 5.762 19.014 Atomic orbital electron populations 1.23277 0.75921 1.03737 1.02684 1.86530 1.23565 1.32497 1.84570 1.20950 0.88741 0.81623 0.73139 1.90890 1.66640 1.35775 1.45404 1.19039 0.89691 0.93880 1.15590 1.21282 0.93574 0.97152 0.93188 1.21193 0.94071 0.98194 1.02489 1.20274 0.97133 0.91840 0.90532 1.21069 0.87603 1.01644 0.93946 1.60849 1.14217 1.47657 1.08570 1.19152 0.80129 0.93805 0.96421 0.97868 1.21739 1.03195 0.97070 0.96467 1.21237 0.91920 1.40153 1.02625 0.92120 1.24915 0.96804 0.95270 0.96947 1.69888 1.02323 1.46069 1.34512 0.86504 0.78066 0.79278 0.83590 1.20578 1.21255 1.19888 1.21064 0.90491 1.00913 1.04264 1.17682 0.89247 0.80808 0.97851 1.91583 1.77281 1.47982 1.92797 0.91782 0.87907 0.91842 0.83733 0.84383 0.90153 0.94240 0.84876 0.89979 0.94837 0.97627 0.92829 0.83439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.29 10.57 101.05 1.07 1.36 16 2 O -0.35 -3.89 9.82 -40.56 -0.40 -4.29 16 3 C 0.51 6.93 7.89 34.53 0.27 7.20 16 4 O -0.50 -8.05 15.13 -19.26 -0.29 -8.34 16 5 C -0.18 -2.37 5.88 -104.93 -0.62 -2.99 16 6 C -0.03 -0.37 9.62 -39.17 -0.38 -0.75 16 7 C -0.14 -1.64 9.67 -39.64 -0.38 -2.03 16 8 C 0.00 0.04 5.40 -104.55 -0.56 -0.52 16 9 C 0.09 1.38 5.60 -4.98 -0.03 1.35 16 10 N -0.68 -13.44 6.29 -109.22 -0.69 -14.12 16 11 C 0.21 5.08 2.60 -68.86 -0.18 4.90 16 12 H 0.00 0.10 7.80 -51.93 -0.40 -0.31 16 13 C -0.13 -3.02 9.19 37.16 0.34 -2.68 16 14 C -0.52 -13.75 8.59 -34.44 -0.30 -14.05 16 15 H 0.06 1.58 7.62 -52.49 -0.40 1.18 16 16 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 17 N -0.89 -24.70 11.32 55.43 0.63 -24.07 16 18 Si 0.90 20.73 29.54 -169.99 -5.02 15.70 16 19 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 20 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 22 C -0.15 -2.04 9.66 -39.56 -0.38 -2.42 16 23 C 0.16 2.35 7.29 -38.94 -0.28 2.06 16 24 F -0.12 -1.87 15.55 2.25 0.04 -1.83 16 25 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 26 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.14 1.25 7.61 -52.49 -0.40 0.85 16 29 H 0.14 1.38 8.06 -52.49 -0.42 0.96 16 30 H 0.08 1.29 7.38 -51.93 -0.38 0.90 16 31 H 0.04 0.61 8.00 -51.93 -0.42 0.20 16 32 H 0.33 6.42 8.21 -39.30 -0.32 6.10 16 33 H 0.08 2.15 6.07 -51.93 -0.32 1.83 16 34 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 35 H 0.00 0.10 7.45 -51.93 -0.39 -0.29 16 36 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 37 H 0.15 1.94 8.06 -52.49 -0.42 1.51 16 LS Contribution 323.35 15.07 4.87 4.87 Total: -1.00 -29.94 323.35 -7.08 -37.02 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: -4.70 Total: 2.02 kcal Atomic # 6 Polarization: -5.44 SS G_CDS: -1.52 Total: -6.96 kcal Atomic # 7 Polarization: -38.14 SS G_CDS: -0.06 Total: -38.20 kcal Atomic # 8 Polarization: -11.94 SS G_CDS: -0.69 Total: -12.63 kcal Atomic # 9 Polarization: -1.87 SS G_CDS: 0.04 Total: -1.83 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -29.94 -7.08 -37.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597084029.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.499 kcal (2) G-P(sol) polarization free energy of solvation -29.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds