Wall clock time and date at job start Tue Mar 31 2020 05:21:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52994 * 109.47044 * 2 1 4 4 C 1.52998 * 109.47204 * 239.99296 * 2 1 3 5 5 O 1.45202 * 109.46716 * 119.99742 * 2 1 3 6 6 C 1.34755 * 117.00369 * 59.99849 * 5 2 1 7 7 O 1.21511 * 119.99729 * 0.02562 * 6 5 2 8 8 C 1.47360 * 119.99888 * 179.97438 * 6 5 2 9 9 N 1.31911 * 126.48812 * 0.02562 * 8 6 5 10 10 N 1.28429 * 110.33994 * 179.75527 * 9 8 6 11 11 H 0.97005 * 124.85423 * 180.23655 * 10 9 8 12 12 C 1.35692 * 110.29126 * 0.40085 * 10 9 8 13 13 C 1.36333 * 107.01496 * 359.60687 * 12 10 9 14 14 N 1.39720 * 127.33468 * 180.22346 * 13 12 10 15 15 C 1.34777 * 120.00042 * 359.97438 * 14 13 12 16 16 O 1.21767 * 120.00154 * 359.97438 * 15 14 13 17 17 C 1.41792 * 119.99624 * 180.02562 * 15 14 13 18 18 H 1.08000 * 120.00349 * 359.97438 * 17 15 14 19 19 C 1.40142 * 119.99931 * 179.97438 * 17 15 14 20 20 N 1.30628 * 119.99724 * 0.02562 * 19 17 15 21 21 Si 1.86800 * 120.00104 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.46799 * 90.00177 * 21 19 17 23 23 H 1.48493 * 109.47013 * 210.00131 * 21 19 17 24 24 H 1.48501 * 109.47227 * 330.00779 * 21 19 17 25 25 H 1.09000 * 109.47253 * 300.00018 * 1 2 3 26 26 H 1.08998 * 109.47145 * 60.00795 * 1 2 3 27 27 H 1.09003 * 109.46717 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47199 * 180.02562 * 3 2 1 29 29 H 1.09006 * 109.46799 * 299.99602 * 3 2 1 30 30 H 1.08994 * 109.47343 * 59.99221 * 3 2 1 31 31 H 1.08994 * 109.47216 * 300.00363 * 4 2 1 32 32 H 1.09006 * 109.46992 * 60.00181 * 4 2 1 33 33 H 1.08996 * 109.46774 * 180.02562 * 4 2 1 34 34 H 1.08002 * 126.49628 * 179.87790 * 12 10 9 35 35 H 0.97004 * 119.99802 * 179.97438 * 14 13 12 36 36 H 0.96997 * 119.99722 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0401 -0.7214 -1.2491 5 8 2.0140 -0.6845 1.1856 6 6 1.6519 -1.9734 1.3387 7 8 0.9513 -2.5108 0.5039 8 6 2.1065 -2.7314 2.5178 9 7 2.8660 -2.2784 3.4965 10 7 3.0681 -3.1999 4.3679 11 1 3.5950 -3.0934 5.1753 12 6 2.4420 -4.3448 3.9958 13 6 1.8096 -4.0883 2.8156 14 7 1.0347 -4.9718 2.0599 15 6 0.8486 -6.2373 2.4844 16 8 1.3561 -6.6109 3.5264 17 6 0.0626 -7.1341 1.7172 18 1 -0.3873 -6.8029 0.7929 19 6 -0.1306 -8.4502 2.1583 20 7 0.4131 -8.8506 3.2766 21 14 -1.1666 -9.6313 1.1480 22 1 -0.2981 -10.3471 0.1791 23 1 -1.8173 -10.6151 2.0502 24 1 -2.2078 -8.8708 0.4113 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9562 -0.8901 30 1 1.6766 1.9563 0.8899 31 1 1.6767 -1.7490 -1.2491 32 1 1.6768 -0.2076 -2.1392 33 1 3.1300 -0.7217 -1.2488 34 1 2.4409 -5.2807 4.5348 35 1 0.6307 -4.6743 1.2297 36 1 0.2798 -9.7616 3.5817 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600051688.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:26 Heat of formation + Delta-G solvation = -54.088331 kcal Electronic energy + Delta-G solvation = -22135.805118 eV Core-core repulsion = 18621.844936 eV Total energy + Delta-G solvation = -3513.960183 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 2.81 seconds Orbital eigenvalues (eV) -42.03661 -40.30288 -37.69066 -36.68064 -33.95500 -33.60069 -32.43945 -30.88844 -29.15685 -27.43223 -27.37594 -26.44232 -24.66257 -22.06645 -20.99306 -19.37832 -19.25366 -18.08046 -16.92195 -16.75585 -16.28575 -15.90338 -15.44065 -14.88826 -14.73758 -14.23135 -14.11108 -13.96194 -13.62344 -12.81039 -12.60938 -12.49175 -12.33612 -12.20144 -11.88614 -11.87909 -11.42351 -11.39192 -11.20470 -11.15151 -10.67397 -10.52749 -10.28405 -10.27623 -9.90297 -9.89798 -8.98583 -8.86321 -7.78608 -6.97493 -6.38991 -4.88412 1.71060 2.75348 2.79843 3.07506 3.14415 3.18441 3.42574 3.59026 4.00493 4.45684 4.59792 4.72222 4.75820 4.90001 5.02936 5.30995 5.43166 5.51034 5.65719 5.70011 5.74646 5.76497 5.84471 5.93709 5.98168 6.28053 6.30213 6.40719 6.58467 6.73428 7.25299 7.49764 7.86491 8.04219 8.07297 8.18921 8.40459 8.81262 9.33065 10.37210 10.56714 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.021510 B = 0.004634 C = 0.003914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.418354 B = 6041.318814 C = 7151.668343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.116 3.884 3 C -0.138 4.138 4 C -0.184 4.184 5 O -0.338 6.338 6 C 0.566 3.434 7 O -0.505 6.505 8 C -0.063 4.063 9 N -0.239 5.239 10 N -0.370 5.370 11 H 0.445 0.555 12 C -0.066 4.066 13 C 0.140 3.860 14 N -0.664 5.664 15 C 0.546 3.454 16 O -0.572 6.572 17 C -0.534 4.534 18 H 0.072 0.928 19 C 0.089 3.911 20 N -0.749 5.749 21 Si 0.913 3.087 22 H -0.270 1.270 23 H -0.277 1.277 24 H -0.262 1.262 25 H 0.060 0.940 26 H 0.068 0.932 27 H 0.087 0.913 28 H 0.065 0.935 29 H 0.076 0.924 30 H 0.065 0.935 31 H 0.087 0.913 32 H 0.068 0.932 33 H 0.060 0.940 34 H 0.212 0.788 35 H 0.405 0.595 36 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.760 14.430 -3.781 15.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.080 3.920 3 C -0.195 4.195 4 C -0.241 4.241 5 O -0.255 6.255 6 C 0.410 3.590 7 O -0.391 6.391 8 C -0.221 4.221 9 N -0.080 5.080 10 N -0.089 5.089 11 H 0.289 0.711 12 C -0.212 4.212 13 C 0.031 3.969 14 N -0.308 5.308 15 C 0.355 3.645 16 O -0.456 6.456 17 C -0.569 4.569 18 H 0.090 0.910 19 C -0.134 4.134 20 N -0.377 5.377 21 Si 0.737 3.263 22 H -0.195 1.195 23 H -0.203 1.203 24 H -0.186 1.186 25 H 0.079 0.921 26 H 0.087 0.913 27 H 0.105 0.895 28 H 0.085 0.915 29 H 0.094 0.906 30 H 0.085 0.915 31 H 0.105 0.895 32 H 0.087 0.913 33 H 0.079 0.921 34 H 0.228 0.772 35 H 0.240 0.760 36 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 3.346 14.720 -2.983 15.388 hybrid contribution -0.867 -1.034 -0.835 1.587 sum 2.479 13.686 -3.819 14.424 Atomic orbital electron populations 1.22503 0.94093 1.05064 1.02409 1.22149 0.94423 0.92166 0.83310 1.21820 1.02169 0.92775 1.02778 1.22500 1.01651 1.03466 0.96451 1.86685 1.69634 1.24656 1.44518 1.19407 0.76526 0.79729 0.83368 1.90720 1.36029 1.70137 1.42216 1.20330 1.10503 0.93229 0.98040 1.73401 1.16734 1.17823 1.00091 1.43255 1.38626 1.07861 1.19124 0.71077 1.23588 1.04390 0.93251 1.00005 1.17870 0.97172 0.88320 0.93538 1.43764 1.50469 1.11421 1.25108 1.17063 0.82272 0.78800 0.86327 1.90482 1.53871 1.75295 1.25951 1.20021 1.32257 0.95797 1.08839 0.90955 1.25745 0.94573 0.98540 0.94506 1.69996 1.32992 1.17066 1.17608 0.86265 0.80252 0.79749 0.79991 1.19479 1.20256 1.18600 0.92090 0.91275 0.89454 0.91546 0.90568 0.91543 0.89453 0.91275 0.92088 0.77172 0.75967 0.91681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.24 8.37 37.16 0.31 -1.93 16 2 C 0.12 1.47 1.13 -90.62 -0.10 1.37 16 3 C -0.14 -1.32 8.85 37.15 0.33 -0.99 16 4 C -0.18 -2.24 8.37 37.16 0.31 -1.93 16 5 O -0.34 -5.46 9.90 -40.64 -0.40 -5.86 16 6 C 0.57 10.44 7.27 34.44 0.25 10.69 16 7 O -0.50 -9.62 10.90 -19.27 -0.21 -9.83 16 8 C -0.06 -1.26 7.17 -82.66 -0.59 -1.85 16 9 N -0.24 -4.26 12.22 33.47 0.41 -3.85 16 10 N -0.37 -5.84 6.85 30.78 0.21 -5.63 16 11 H 0.45 4.84 8.96 -190.46 -1.71 3.14 16 12 C -0.07 -1.31 10.92 -16.53 -0.18 -1.50 16 13 C 0.14 3.10 6.99 -83.49 -0.58 2.51 16 14 N -0.66 -16.04 5.41 -12.26 -0.07 -16.10 16 15 C 0.55 15.23 7.54 -14.90 -0.11 15.12 16 16 O -0.57 -17.08 12.15 5.13 0.06 -17.01 16 17 C -0.53 -14.71 9.31 -37.51 -0.35 -15.06 16 18 H 0.07 1.85 7.85 -52.49 -0.41 1.44 16 19 C 0.09 2.38 5.50 -17.35 -0.10 2.28 16 20 N -0.75 -21.16 11.73 55.56 0.65 -20.51 16 21 Si 0.91 19.39 29.56 -169.99 -5.02 14.36 16 22 H -0.27 -5.61 7.11 56.52 0.40 -5.20 16 23 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 24 H -0.26 -5.44 7.11 56.52 0.40 -5.04 16 25 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.09 1.28 5.88 -51.93 -0.31 0.97 16 28 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.09 1.28 5.88 -51.93 -0.31 0.97 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.21 4.55 6.01 -52.49 -0.32 4.23 16 35 H 0.40 9.27 7.10 -40.82 -0.29 8.98 16 36 H 0.27 6.94 8.29 -40.82 -0.34 6.60 16 LS Contribution 308.44 15.07 4.65 4.65 Total: -1.00 -32.72 308.44 -5.96 -38.68 By element: Atomic # 1 Polarization: 17.82 SS G_CDS: -5.43 Total: 12.39 kcal Atomic # 6 Polarization: 9.53 SS G_CDS: -0.81 Total: 8.71 kcal Atomic # 7 Polarization: -47.30 SS G_CDS: 1.21 Total: -46.09 kcal Atomic # 8 Polarization: -32.15 SS G_CDS: -0.55 Total: -32.70 kcal Atomic # 14 Polarization: 19.39 SS G_CDS: -5.02 Total: 14.36 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -32.72 -5.96 -38.68 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600051688.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.404 kcal (2) G-P(sol) polarization free energy of solvation -32.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.81 seconds