Wall clock time and date at job start Tue Mar 31 2020 06:37:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34718 * 117.00230 * 2 1 4 4 O 1.21482 * 119.99919 * 359.97438 * 3 2 1 5 5 C 1.47633 * 120.00140 * 180.02562 * 3 2 1 6 6 C 1.40958 * 126.27460 * 180.24918 * 5 3 2 7 7 C 1.37009 * 105.46162 * 180.13506 * 6 5 3 8 8 C 1.47214 * 126.64160 * 179.89653 * 7 6 5 9 9 O 1.21622 * 120.00098 * 184.50149 * 8 7 6 10 10 N 1.34776 * 119.99877 * 4.50012 * 8 7 6 11 11 C 1.46500 * 120.00220 * 174.43824 * 10 8 7 12 12 H 1.08994 * 109.46913 * 325.00842 * 11 10 8 13 13 C 1.53005 * 109.46795 * 85.00120 * 11 10 8 14 14 C 1.50699 * 109.47388 * 205.00216 * 11 10 8 15 15 H 1.07996 * 119.99797 * 0.02562 * 14 11 10 16 16 C 1.37876 * 120.00006 * 180.02562 * 14 11 10 17 17 N 1.31513 * 120.00136 * 0.02562 * 16 14 11 18 18 Si 1.86797 * 120.00015 * 180.02562 * 16 14 11 19 19 H 1.48503 * 109.47032 * 90.00031 * 18 16 14 20 20 H 1.48503 * 109.47078 * 210.00016 * 18 16 14 21 21 H 1.48504 * 109.47397 * 330.00187 * 18 16 14 22 22 N 1.36762 * 106.71814 * 359.63326 * 7 6 5 23 23 C 1.46506 * 125.05960 * 180.22194 * 22 7 6 24 24 N 1.28450 * 109.88479 * 0.24010 * 22 7 6 25 25 H 1.09001 * 109.47711 * 300.00781 * 1 2 3 26 26 H 1.09003 * 109.46804 * 60.00995 * 1 2 3 27 27 H 1.09008 * 109.47181 * 180.02562 * 1 2 3 28 28 H 1.07998 * 127.27144 * 0.03820 * 6 5 3 29 29 H 0.97010 * 119.99911 * 354.44810 * 10 8 7 30 30 H 1.09000 * 109.47210 * 179.97438 * 13 11 10 31 31 H 1.09006 * 109.46558 * 60.00343 * 13 11 10 32 32 H 1.09001 * 109.47285 * 300.00696 * 13 11 10 33 33 H 0.96994 * 120.00382 * 180.02562 * 17 16 14 34 34 H 1.08998 * 109.46845 * 84.15098 * 23 22 7 35 35 H 1.08996 * 109.46925 * 204.15562 * 23 22 7 36 36 H 1.09004 * 109.46571 * 324.15192 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2003 0.0000 4 8 1.4020 2.2192 -0.0005 5 6 3.5379 1.2776 -0.0006 6 6 4.3113 2.4560 0.0043 7 6 5.6157 2.0369 -0.0015 8 6 6.8135 2.8927 -0.0018 9 8 7.9185 2.3922 -0.0900 10 7 6.6857 4.2308 0.0957 11 6 7.8777 5.0736 0.2183 12 1 8.6328 4.5516 0.8058 13 6 8.4342 5.3755 -1.1747 14 6 7.5117 6.3649 0.9037 15 1 6.4932 6.5400 1.2171 16 6 8.4772 7.3226 1.1306 17 7 9.7175 7.1095 0.7486 18 14 8.0238 8.9228 1.9809 19 1 8.1868 8.7670 3.4487 20 1 8.9124 10.0097 1.4968 21 1 6.6116 9.2641 1.6732 22 7 5.5896 0.6695 -0.0011 23 6 6.7725 -0.1948 -0.0016 24 7 4.3736 0.2558 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3634 -1.0277 0.0005 28 1 3.9517 3.4743 0.0097 29 1 5.8043 4.6359 0.0849 30 1 9.3208 6.0029 -1.0836 31 1 7.6789 5.8975 -1.7623 32 1 8.6988 4.4415 -1.6705 33 1 10.3968 7.7831 0.9085 34 1 7.1283 -0.3242 1.0205 35 1 6.5124 -1.1664 -0.4216 36 1 7.5569 0.2633 -0.6042 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601023217.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:25 Heat of formation + Delta-G solvation = -41.958988 kcal Electronic energy + Delta-G solvation = -21550.583915 eV Core-core repulsion = 18037.149700 eV Total energy + Delta-G solvation = -3513.434215 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.73731 -40.23823 -38.78940 -36.55670 -35.05523 -33.57535 -32.57572 -31.23002 -28.75548 -28.68073 -27.10377 -25.32911 -23.67589 -23.26100 -21.33083 -20.23376 -19.69324 -18.42669 -17.28923 -16.76886 -16.44720 -16.22610 -16.08928 -15.65318 -15.11135 -14.36034 -14.09844 -13.83428 -13.76992 -13.53824 -13.25372 -12.71776 -12.59047 -12.41840 -12.29439 -11.81222 -11.24176 -11.09858 -11.03600 -10.96191 -10.88635 -10.84349 -10.37653 -10.29433 -9.50397 -9.37621 -9.24426 -9.13402 -8.63067 -8.10946 -6.19074 -4.28857 1.17121 1.43887 2.11431 2.62417 3.00567 3.22543 3.29486 3.31612 3.59500 3.78675 4.18107 4.31160 4.79855 4.91123 4.97941 4.99502 5.10603 5.14045 5.18094 5.27179 5.40576 5.52872 5.61410 6.07029 6.17765 6.44766 6.73329 6.86593 7.03874 7.24749 7.38220 7.49531 7.60821 7.77698 7.82150 8.05044 8.44550 8.62451 8.86290 9.38634 10.86903 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.021345 B = 0.003985 C = 0.003463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.454080 B = 7024.787382 C = 8083.040292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.345 6.345 3 C 0.560 3.440 4 O -0.497 6.497 5 C -0.021 4.021 6 C -0.130 4.130 7 C -0.019 4.019 8 C 0.575 3.425 9 O -0.549 6.549 10 N -0.686 5.686 11 C 0.267 3.733 12 H 0.051 0.949 13 C -0.149 4.149 14 C -0.537 4.537 15 H 0.064 0.936 16 C 0.068 3.932 17 N -0.883 5.883 18 Si 0.903 3.097 19 H -0.279 1.279 20 H -0.285 1.285 21 H -0.272 1.272 22 N -0.242 5.242 23 C 0.083 3.917 24 N -0.219 5.219 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.102 0.898 28 H 0.174 0.826 29 H 0.394 0.606 30 H 0.092 0.908 31 H 0.029 0.971 32 H 0.017 0.983 33 H 0.265 0.735 34 H 0.091 0.909 35 H 0.096 0.904 36 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.001 -13.207 -1.981 17.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.261 6.261 3 C 0.402 3.598 4 O -0.383 6.383 5 C -0.175 4.175 6 C -0.158 4.158 7 C -0.145 4.145 8 C 0.357 3.643 9 O -0.429 6.429 10 N -0.333 5.333 11 C 0.166 3.834 12 H 0.069 0.931 13 C -0.207 4.207 14 C -0.576 4.576 15 H 0.082 0.918 16 C -0.136 4.136 17 N -0.520 5.520 18 Si 0.731 3.269 19 H -0.205 1.205 20 H -0.210 1.210 21 H -0.197 1.197 22 N -0.033 5.033 23 C -0.057 4.057 24 N -0.060 5.060 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.121 0.879 28 H 0.192 0.808 29 H 0.228 0.772 30 H 0.111 0.889 31 H 0.048 0.952 32 H 0.036 0.964 33 H 0.075 0.925 34 H 0.109 0.891 35 H 0.115 0.885 36 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -11.104 -14.344 -2.023 18.253 hybrid contribution -0.854 1.886 0.472 2.123 sum -11.958 -12.459 -1.550 17.338 Atomic orbital electron populations 1.23318 0.75935 1.03802 1.02733 1.86634 1.23377 1.32045 1.84032 1.19516 0.86136 0.81635 0.72479 1.90875 1.65393 1.36010 1.45997 1.20450 0.90879 0.91051 1.15114 1.21923 0.89820 0.99739 1.04338 1.21648 0.96494 0.84929 1.11464 1.16874 0.85840 0.83044 0.78510 1.90748 1.26146 1.74184 1.51803 1.46396 1.12690 1.04411 1.69794 1.18875 0.81747 0.88485 0.94262 0.93096 1.22097 1.02556 0.99110 0.96977 1.21200 0.96068 1.00782 1.39501 0.91795 1.24872 0.94762 0.98627 0.95307 1.69890 1.01261 1.35135 1.45743 0.86413 0.78492 0.82389 0.79641 1.20505 1.21035 1.19700 1.45852 1.05311 1.04848 1.47316 1.22512 0.83295 0.94181 1.05671 1.73647 0.89679 1.26457 1.16201 0.91695 0.91703 0.87941 0.80819 0.77246 0.88913 0.95230 0.96369 0.92461 0.89091 0.88537 0.86495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.30 10.56 101.05 1.07 1.36 16 2 O -0.35 -4.29 10.57 -40.54 -0.43 -4.72 16 3 C 0.56 8.06 7.97 34.57 0.28 8.34 16 4 O -0.50 -7.86 16.70 -19.25 -0.32 -8.18 16 5 C -0.02 -0.32 7.13 -82.93 -0.59 -0.91 16 6 C -0.13 -1.96 10.22 -39.00 -0.40 -2.36 16 7 C -0.02 -0.31 6.90 -82.47 -0.57 -0.88 16 8 C 0.57 11.02 7.75 -12.62 -0.10 10.92 16 9 O -0.55 -11.76 14.41 5.26 0.08 -11.68 16 10 N -0.69 -13.74 5.05 -56.08 -0.28 -14.02 16 11 C 0.27 6.49 2.52 -69.08 -0.17 6.32 16 12 H 0.05 1.41 7.66 -51.93 -0.40 1.01 16 13 C -0.15 -3.55 9.26 37.16 0.34 -3.21 16 14 C -0.54 -13.76 8.73 -34.44 -0.30 -14.06 16 15 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 16 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 17 N -0.88 -24.11 11.32 55.43 0.63 -23.49 16 18 Si 0.90 20.21 29.54 -169.99 -5.02 15.19 16 19 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 20 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 21 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 22 N -0.24 -3.55 3.75 -64.19 -0.24 -3.79 16 23 C 0.08 0.93 10.68 59.85 0.64 1.57 16 24 N -0.22 -3.27 11.97 33.32 0.40 -2.87 16 25 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.10 0.54 8.14 -51.92 -0.42 0.12 16 28 H 0.17 2.31 7.53 -52.49 -0.40 1.91 16 29 H 0.39 6.92 7.52 -40.82 -0.31 6.61 16 30 H 0.09 2.41 6.07 -51.93 -0.32 2.10 16 31 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.02 0.40 8.07 -51.93 -0.42 -0.01 16 33 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 34 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 35 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.12 1.44 6.52 -51.93 -0.34 1.10 16 LS Contribution 319.93 15.07 4.82 4.82 Total: -1.00 -30.98 319.93 -4.52 -35.50 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: -4.25 Total: 4.46 kcal Atomic # 6 Polarization: 8.68 SS G_CDS: 0.10 Total: 8.78 kcal Atomic # 7 Polarization: -44.67 SS G_CDS: 0.50 Total: -44.17 kcal Atomic # 8 Polarization: -23.90 SS G_CDS: -0.67 Total: -24.58 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.19 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -30.98 -4.52 -35.50 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601023217.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.461 kcal (2) G-P(sol) polarization free energy of solvation -30.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds