Wall clock time and date at job start Tue Mar 31 2020 06:23:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47649 * 2 1 4 4 C 1.53002 * 109.46687 * 119.99877 * 2 1 3 5 5 C 1.50706 * 109.47153 * 294.99260 * 4 2 1 6 6 H 1.07998 * 119.99503 * 0.02562 * 5 4 2 7 7 C 1.37871 * 120.00434 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99826 * 359.72891 * 7 5 4 9 9 Si 1.86800 * 120.00406 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47364 * 179.72558 * 9 7 5 11 11 H 1.48508 * 109.46883 * 299.72681 * 9 7 5 12 12 H 1.48497 * 109.46870 * 59.72491 * 9 7 5 13 13 C 1.53005 * 109.47080 * 239.99305 * 2 1 3 14 14 N 1.46494 * 109.46777 * 65.00298 * 13 2 1 15 15 C 1.39683 * 119.99893 * 179.97438 * 14 13 2 16 16 C 1.38932 * 120.06990 * 359.72734 * 15 14 13 17 17 C 1.38090 * 119.92083 * 179.74055 * 16 15 14 18 18 C 1.38303 * 120.07461 * 0.53394 * 17 16 15 19 19 C 1.38270 * 120.14838 * 359.74150 * 18 17 16 20 20 S 1.76204 * 119.96177 * 179.97438 * 19 18 17 21 21 C 1.81399 * 103.00206 * 269.97881 * 20 19 18 22 22 O 1.42105 * 102.99738 * 23.83285 * 20 19 18 23 23 C 1.38124 * 120.07764 * 359.97438 * 19 18 17 24 24 H 1.09000 * 109.46932 * 300.00791 * 1 2 3 25 25 H 1.09001 * 109.46866 * 60.00233 * 1 2 3 26 26 H 1.09000 * 109.47309 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47178 * 175.00050 * 4 2 1 28 28 H 1.08993 * 109.47411 * 54.99732 * 4 2 1 29 29 H 0.97000 * 120.00236 * 0.27947 * 8 7 5 30 30 H 1.08997 * 109.46867 * 185.00573 * 13 2 1 31 31 H 1.09001 * 109.46919 * 305.00269 * 13 2 1 32 32 H 0.96998 * 120.00823 * 0.02562 * 14 13 2 33 33 H 1.07994 * 120.04221 * 0.02562 * 16 15 14 34 34 H 1.07995 * 119.95908 * 180.25358 * 17 16 15 35 35 H 1.07993 * 119.92576 * 179.71803 * 18 17 16 36 36 H 1.09004 * 109.46964 * 59.99654 * 21 20 19 37 37 H 1.08995 * 109.46973 * 179.97438 * 21 20 19 38 38 H 1.08998 * 109.47304 * 300.00170 * 21 20 19 39 39 H 1.07991 * 120.03891 * 180.02562 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 1.6413 0.0572 2.4766 6 1 1.0801 0.9744 2.3756 7 6 1.9931 -0.4014 3.7283 8 7 2.6720 -1.5211 3.8516 9 14 1.4984 0.5631 5.2497 10 1 1.9882 -0.1399 6.4625 11 1 2.0952 1.9217 5.1901 12 1 0.0187 0.6744 5.3057 13 6 2.0400 -0.7214 -1.2492 14 7 1.6525 0.0351 -2.4423 15 6 2.0090 -0.4297 -3.7104 16 6 2.7360 -1.6064 -3.8414 17 6 3.0821 -2.0660 -5.0968 18 6 2.7155 -1.3505 -6.2222 19 6 1.9969 -0.1761 -6.0949 20 16 1.5330 0.7318 -7.5320 21 6 2.9352 1.8567 -7.7744 22 8 1.5384 -0.2584 -8.5512 23 6 1.6423 0.2862 -4.8426 24 1 -0.3633 0.5140 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 3.1263 -0.7995 1.2057 28 1 1.6053 -1.7197 1.2953 29 1 2.9286 -2.0221 3.0617 30 1 3.1263 -0.7997 -1.2054 31 1 1.6053 -1.7200 -1.2950 32 1 1.1490 0.8592 -2.3518 33 1 3.0260 -2.1634 -2.9629 34 1 3.6437 -2.9827 -5.1996 35 1 2.9915 -1.7098 -7.2025 36 1 3.8458 1.2759 -7.9216 37 1 2.7552 2.4780 -8.6517 38 1 3.0476 2.4919 -6.8958 39 1 1.0807 1.2033 -4.7439 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602489972.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:30 Heat of formation + Delta-G solvation = -32.596997 kcal Electronic energy + Delta-G solvation = -18974.127273 eV Core-core repulsion = 16007.392239 eV Total energy + Delta-G solvation = -2966.735034 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -39.44903 -36.84215 -35.88385 -34.22811 -32.22573 -31.14113 -29.15689 -28.89914 -26.63354 -25.82088 -23.31660 -22.67151 -21.62513 -19.60825 -18.20807 -17.09009 -16.84297 -16.24195 -15.56441 -15.04857 -15.02283 -14.72212 -14.20374 -13.83876 -13.71993 -13.58692 -13.37693 -13.28627 -12.98752 -12.40691 -12.19367 -11.93562 -11.72815 -11.55955 -11.51880 -11.17679 -10.84701 -10.48432 -10.37931 -10.24497 -10.14888 -9.88361 -9.67607 -9.21888 -8.60134 -8.57175 -8.38511 -7.36328 -6.40906 -4.10563 0.87553 1.53403 1.76222 2.52668 3.39917 3.41367 3.53149 3.60266 3.65379 3.86114 4.50061 4.81669 4.91663 5.01140 5.11116 5.23549 5.32199 5.35668 5.45733 5.50248 5.59167 5.70157 5.74012 5.82896 6.02334 6.17486 6.19465 6.24651 6.29112 6.47341 6.60943 6.76149 6.80971 6.89627 7.25976 7.38439 7.43101 7.82350 8.13991 8.39931 8.82636 9.61194 10.99497 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.041462 B = 0.002764 C = 0.002674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.152440 B =10129.335444 C =10470.175220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.089 4.089 3 H 0.064 0.936 4 C 0.017 3.983 5 C -0.598 4.598 6 H 0.050 0.950 7 C 0.014 3.986 8 N -0.913 5.913 9 Si 1.067 2.933 10 H -0.283 1.283 11 H -0.288 1.288 12 H -0.288 1.288 13 C 0.124 3.876 14 N -0.740 5.740 15 C 0.210 3.790 16 C -0.165 4.165 17 C -0.085 4.085 18 C -0.123 4.123 19 C -0.412 4.412 20 S 1.328 4.672 21 C -0.497 4.497 22 O -0.861 6.861 23 C -0.130 4.130 24 H 0.065 0.935 25 H 0.033 0.967 26 H 0.045 0.955 27 H 0.007 0.993 28 H 0.009 0.991 29 H 0.268 0.732 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.400 0.600 33 H 0.125 0.875 34 H 0.120 0.880 35 H 0.119 0.881 36 H 0.080 0.920 37 H 0.103 0.897 38 H 0.111 0.889 39 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.067 7.094 -19.805 21.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.107 4.107 3 H 0.082 0.918 4 C -0.021 4.021 5 C -0.636 4.636 6 H 0.069 0.931 7 C -0.190 4.190 8 N -0.549 5.549 9 Si 0.896 3.104 10 H -0.208 1.208 11 H -0.215 1.215 12 H -0.214 1.214 13 C 0.001 3.999 14 N -0.367 5.367 15 C 0.103 3.897 16 C -0.188 4.188 17 C -0.105 4.105 18 C -0.145 4.145 19 C -0.509 4.509 20 S 1.526 4.474 21 C -0.654 4.654 22 O -0.857 6.857 23 C -0.154 4.154 24 H 0.084 0.916 25 H 0.052 0.948 26 H 0.064 0.936 27 H 0.026 0.974 28 H 0.027 0.973 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.235 0.765 33 H 0.143 0.857 34 H 0.138 0.862 35 H 0.137 0.863 36 H 0.100 0.900 37 H 0.122 0.878 38 H 0.129 0.871 39 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -3.725 6.890 -18.526 20.113 hybrid contribution 1.864 -0.936 -1.655 2.662 sum -1.861 5.954 -20.180 21.123 Atomic orbital electron populations 1.21713 0.95590 1.01138 1.00425 1.21296 0.95866 0.99721 0.93866 0.91763 1.19206 0.95457 0.95620 0.91786 1.21985 1.39063 1.10390 0.92187 0.93149 1.25834 0.94609 0.97091 1.01422 1.70790 1.35966 1.14590 1.33553 0.83563 0.76074 0.75147 0.75659 1.20783 1.21465 1.21440 1.21648 0.98970 0.95233 0.84092 1.44964 1.61298 1.28083 1.02405 1.17981 0.93026 0.92901 0.85751 1.20908 1.02695 0.97041 0.98121 1.20975 0.98476 0.99031 0.92060 1.20756 0.99731 0.95399 0.98613 1.27217 1.07308 1.05783 1.10618 1.69428 1.01134 0.94316 0.82520 1.27749 1.16808 1.12635 1.08165 1.93088 1.81516 1.57603 1.53498 1.20187 1.04444 1.00935 0.89828 0.91591 0.94826 0.93562 0.97442 0.97250 0.92126 0.92679 0.92647 0.76523 0.85695 0.86168 0.86336 0.90044 0.87833 0.87059 0.85077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.25 8.88 37.16 0.33 -1.92 16 2 C -0.09 -1.64 2.37 -90.62 -0.22 -1.85 16 3 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 4 C 0.02 0.40 3.76 -27.88 -0.10 0.30 16 5 C -0.60 -16.16 8.41 -34.44 -0.29 -16.45 16 6 H 0.05 1.33 7.06 -52.49 -0.37 0.96 16 7 C 0.01 0.40 5.46 -17.82 -0.10 0.30 16 8 N -0.91 -27.39 13.65 55.43 0.76 -26.64 16 9 Si 1.07 24.62 29.90 -169.99 -5.08 19.54 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 11 H -0.29 -6.34 7.11 56.52 0.40 -5.93 16 12 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 13 C 0.12 1.94 4.30 -4.04 -0.02 1.93 16 14 N -0.74 -9.64 5.46 -58.63 -0.32 -9.96 16 15 C 0.21 2.70 6.65 -83.78 -0.56 2.14 16 16 C -0.16 -2.21 9.31 -39.38 -0.37 -2.58 16 17 C -0.09 -1.10 10.04 -39.61 -0.40 -1.49 16 18 C -0.12 -1.62 9.44 -39.55 -0.37 -2.00 16 19 C -0.41 -4.56 5.61 -39.61 -0.22 -4.78 16 20 S 1.33 10.67 14.19 -107.50 -1.52 9.14 16 21 C -0.50 -3.45 10.70 101.05 1.08 -2.37 16 22 O -0.86 -12.50 16.89 -35.23 -0.60 -13.10 16 23 C -0.13 -1.36 9.60 -39.38 -0.38 -1.74 16 24 H 0.07 1.24 6.95 -51.93 -0.36 0.88 16 25 H 0.03 0.47 7.18 -51.93 -0.37 0.09 16 26 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 27 H 0.01 0.19 8.01 -51.93 -0.42 -0.23 16 28 H 0.01 0.23 8.00 -51.93 -0.42 -0.18 16 29 H 0.27 8.00 7.22 -40.82 -0.29 7.70 16 30 H 0.05 0.89 7.94 -51.93 -0.41 0.48 16 31 H 0.06 0.89 7.96 -51.93 -0.41 0.47 16 32 H 0.40 4.55 7.67 -40.82 -0.31 4.24 16 33 H 0.13 1.66 6.74 -52.49 -0.35 1.30 16 34 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 35 H 0.12 1.62 7.45 -52.49 -0.39 1.23 16 36 H 0.08 0.73 8.14 -51.92 -0.42 0.31 16 37 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.11 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 LS Contribution 334.94 15.07 5.05 5.05 Total: -1.00 -35.27 334.94 -9.20 -44.46 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -5.87 Total: 2.02 kcal Atomic # 6 Polarization: -28.91 SS G_CDS: -1.61 Total: -30.52 kcal Atomic # 7 Polarization: -37.04 SS G_CDS: 0.44 Total: -36.60 kcal Atomic # 8 Polarization: -12.50 SS G_CDS: -0.60 Total: -13.10 kcal Atomic # 14 Polarization: 24.62 SS G_CDS: -5.08 Total: 19.54 kcal Atomic # 16 Polarization: 10.67 SS G_CDS: -1.52 Total: 9.14 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -35.27 -9.20 -44.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602489972.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.865 kcal (2) G-P(sol) polarization free energy of solvation -35.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds