Wall clock time and date at job start Tue Mar 31 2020 06:23:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 5 5 C 1.50707 * 109.46966 * 64.99950 * 4 2 1 6 6 H 1.07991 * 119.99895 * 0.02562 * 5 4 2 7 7 C 1.37881 * 120.00104 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99811 * 0.02562 * 7 5 4 9 9 Si 1.86791 * 120.00175 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47556 * 90.00047 * 9 7 5 11 11 H 1.48504 * 109.47118 * 210.00306 * 9 7 5 12 12 H 1.48508 * 109.46863 * 330.00026 * 9 7 5 13 13 C 1.52999 * 109.47317 * 119.99641 * 2 1 3 14 14 N 1.46501 * 109.47135 * 295.00335 * 13 2 1 15 15 C 1.39679 * 119.99889 * 179.97438 * 14 13 2 16 16 C 1.38933 * 120.07371 * 359.72249 * 15 14 13 17 17 C 1.38086 * 119.92340 * 179.74362 * 16 15 14 18 18 C 1.38312 * 120.07301 * 0.53289 * 17 16 15 19 19 C 1.38266 * 120.14858 * 359.74502 * 18 17 16 20 20 S 1.76199 * 119.96032 * 180.02562 * 19 18 17 21 21 C 1.81406 * 103.00091 * 269.97602 * 20 19 18 22 22 O 1.42102 * 103.00254 * 23.82665 * 20 19 18 23 23 C 1.38121 * 120.07446 * 359.97438 * 19 18 17 24 24 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 26 26 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 27 27 H 1.08996 * 109.47729 * 184.99759 * 4 2 1 28 28 H 1.09001 * 109.47563 * 305.00337 * 4 2 1 29 29 H 0.97004 * 120.00016 * 180.02562 * 8 7 5 30 30 H 1.09006 * 109.47194 * 55.00274 * 13 2 1 31 31 H 1.08997 * 109.47756 * 174.99755 * 13 2 1 32 32 H 0.96997 * 120.00359 * 0.02562 * 14 13 2 33 33 H 1.07999 * 120.04122 * 0.02562 * 16 15 14 34 34 H 1.07994 * 119.96265 * 180.25644 * 17 16 15 35 35 H 1.07995 * 119.92396 * 179.71705 * 18 17 16 36 36 H 1.08999 * 109.46866 * 59.99862 * 21 20 19 37 37 H 1.08993 * 109.47269 * 179.97438 * 21 20 19 38 38 H 1.09002 * 109.47028 * 300.00606 * 21 20 19 39 39 H 1.08008 * 120.03605 * 179.97438 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2491 5 6 1.6414 0.0571 -2.4765 6 1 1.0807 0.9745 -2.3757 7 6 1.9924 -0.4022 -3.7283 8 7 2.6748 -1.5198 -3.8512 9 14 1.4989 0.5628 -5.2496 10 1 2.5649 1.5416 -5.5825 11 1 1.3111 -0.3711 -6.3889 12 1 0.2282 1.2851 -4.9869 13 6 2.0400 -0.7212 1.2493 14 7 1.6524 0.0355 2.4424 15 6 2.0080 -0.4298 3.7105 16 6 2.7244 -1.6129 3.8424 17 6 3.0789 -2.0672 5.0973 18 6 2.7122 -1.3516 6.2226 19 6 1.9943 -0.1768 6.0952 20 16 1.5303 0.7312 7.5321 21 6 -0.0881 0.0286 7.9539 22 8 2.4909 0.3191 8.4948 23 6 1.6414 0.2863 4.8427 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 0.5139 0.8900 27 1 3.1263 -0.7994 -1.2055 28 1 1.6054 -1.7198 -1.2951 29 1 2.9221 -1.8428 -4.7318 30 1 1.6054 -1.7198 1.2952 31 1 3.1263 -0.7995 1.2057 32 1 1.1482 0.8591 2.3518 33 1 3.0076 -2.1742 2.9643 34 1 3.6393 -2.9846 5.2003 35 1 2.9868 -1.7115 7.2031 36 1 0.0188 -1.0384 8.1489 37 1 -0.4781 0.5229 8.8435 38 1 -0.7771 0.1787 7.1227 39 1 1.0803 1.2039 4.7438 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602489980.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:47 Heat of formation + Delta-G solvation = -28.935628 kcal Electronic energy + Delta-G solvation = -18941.962702 eV Core-core repulsion = 15975.386437 eV Total energy + Delta-G solvation = -2966.576265 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.39149 -36.72668 -35.84969 -34.02551 -32.13749 -31.09306 -29.15357 -28.89039 -26.92104 -25.82922 -23.35175 -22.63256 -21.53520 -19.36572 -18.13045 -17.03887 -16.59201 -16.07042 -15.46324 -15.02417 -15.00440 -14.65111 -14.47723 -14.09918 -13.66332 -13.54750 -13.25198 -12.94916 -12.72962 -12.46437 -12.15810 -12.00836 -11.66185 -11.51193 -11.47368 -10.98475 -10.94950 -10.47309 -10.42162 -10.32848 -10.14420 -9.78664 -9.36795 -9.17274 -9.10965 -8.54132 -8.42147 -7.29987 -6.06652 -4.08837 0.91990 1.58261 1.79982 2.56126 3.27245 3.34157 3.36193 3.58908 3.70633 3.90500 4.40462 4.86418 4.94142 5.03734 5.16345 5.28416 5.29350 5.42339 5.51555 5.60031 5.64956 5.72447 5.83611 5.89169 6.11855 6.23084 6.28061 6.33103 6.36132 6.52443 6.71173 6.84695 6.93375 6.98372 7.46439 7.56121 7.69210 7.89256 7.91599 8.33639 8.96889 9.55284 11.04746 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.042338 B = 0.002757 C = 0.002656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.184358 B =10151.883925 C =10538.444251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.096 4.096 3 H 0.063 0.937 4 C 0.030 3.970 5 C -0.517 4.517 6 H 0.057 0.943 7 C 0.057 3.943 8 N -0.895 5.895 9 Si 0.891 3.109 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.124 3.876 14 N -0.740 5.740 15 C 0.211 3.789 16 C -0.164 4.164 17 C -0.086 4.086 18 C -0.124 4.124 19 C -0.412 4.412 20 S 1.328 4.672 21 C -0.497 4.497 22 O -0.862 6.862 23 C -0.131 4.131 24 H 0.046 0.954 25 H 0.064 0.936 26 H 0.031 0.969 27 H 0.017 0.983 28 H 0.018 0.982 29 H 0.261 0.739 30 H 0.055 0.945 31 H 0.057 0.943 32 H 0.399 0.601 33 H 0.126 0.874 34 H 0.120 0.880 35 H 0.118 0.882 36 H 0.080 0.920 37 H 0.102 0.898 38 H 0.111 0.889 39 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.201 5.259 19.540 20.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.114 4.114 3 H 0.081 0.919 4 C -0.008 4.008 5 C -0.555 4.555 6 H 0.075 0.925 7 C -0.145 4.145 8 N -0.534 5.534 9 Si 0.719 3.281 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.199 1.199 13 C 0.001 3.999 14 N -0.367 5.367 15 C 0.104 3.896 16 C -0.187 4.187 17 C -0.106 4.106 18 C -0.146 4.146 19 C -0.509 4.509 20 S 1.526 4.474 21 C -0.654 4.654 22 O -0.857 6.857 23 C -0.155 4.155 24 H 0.065 0.935 25 H 0.083 0.917 26 H 0.050 0.950 27 H 0.035 0.965 28 H 0.037 0.963 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.234 0.766 33 H 0.144 0.856 34 H 0.138 0.862 35 H 0.136 0.864 36 H 0.099 0.901 37 H 0.121 0.879 38 H 0.129 0.871 39 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -4.571 5.718 19.706 21.021 hybrid contribution -0.274 -1.711 -0.866 1.937 sum -4.846 4.007 18.840 19.861 Atomic orbital electron populations 1.21723 0.95863 1.01099 1.00232 1.21436 0.95670 0.99839 0.94501 0.91869 1.19080 0.96261 0.95548 0.89876 1.21181 1.35116 1.08362 0.90887 0.92519 1.25019 0.95218 0.95054 0.99173 1.69958 1.38803 1.21074 1.23584 0.86608 0.78924 0.79801 0.82753 1.20674 1.21250 1.19883 1.21658 0.99112 0.95185 0.83957 1.45006 1.61184 1.28089 1.02447 1.17983 0.93037 0.92790 0.85791 1.20921 1.02702 0.96973 0.98134 1.20974 0.98335 0.99156 0.92089 1.20748 1.00070 0.95091 0.98690 1.27194 1.07355 1.05823 1.10575 1.69419 0.84501 1.09921 0.83582 1.27750 1.19400 1.09635 1.08572 1.93086 1.53843 1.81089 1.57727 1.20185 1.04489 1.00930 0.89890 0.93519 0.91712 0.95043 0.96472 0.96341 0.92952 0.92636 0.92520 0.76570 0.85587 0.86197 0.86400 0.90063 0.87877 0.87071 0.85116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.22 8.88 37.16 0.33 -1.89 16 2 C -0.10 -1.75 2.37 -90.63 -0.22 -1.96 16 3 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 4 C 0.03 0.72 4.45 -27.88 -0.12 0.59 16 5 C -0.52 -13.77 8.41 -34.44 -0.29 -14.06 16 6 H 0.06 1.46 7.06 -52.49 -0.37 1.09 16 7 C 0.06 1.56 5.46 -17.82 -0.10 1.47 16 8 N -0.89 -26.11 13.29 55.43 0.74 -25.38 16 9 Si 0.89 20.98 29.54 -169.99 -5.02 15.96 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 12 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 13 C 0.12 1.94 4.30 -4.04 -0.02 1.93 16 14 N -0.74 -9.62 5.46 -58.63 -0.32 -9.94 16 15 C 0.21 2.71 6.65 -83.78 -0.56 2.16 16 16 C -0.16 -2.22 9.31 -39.38 -0.37 -2.59 16 17 C -0.09 -1.11 10.04 -39.61 -0.40 -1.50 16 18 C -0.12 -1.65 9.44 -39.54 -0.37 -2.02 16 19 C -0.41 -4.60 5.61 -39.61 -0.22 -4.82 16 20 S 1.33 10.77 14.19 -107.50 -1.52 9.25 16 21 C -0.50 -3.46 10.70 101.05 1.08 -2.38 16 22 O -0.86 -12.60 16.89 -35.23 -0.60 -13.19 16 23 C -0.13 -1.38 9.60 -39.38 -0.38 -1.75 16 24 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.06 1.19 6.95 -51.93 -0.36 0.83 16 26 H 0.03 0.43 7.18 -51.93 -0.37 0.06 16 27 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 30 H 0.06 0.88 7.94 -51.93 -0.41 0.47 16 31 H 0.06 0.92 7.96 -51.93 -0.41 0.51 16 32 H 0.40 4.52 7.67 -40.82 -0.31 4.21 16 33 H 0.13 1.68 6.74 -52.49 -0.35 1.33 16 34 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 35 H 0.12 1.63 7.45 -52.49 -0.39 1.24 16 36 H 0.08 0.73 8.14 -51.92 -0.42 0.31 16 37 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.11 0.57 8.14 -51.92 -0.42 0.15 16 39 H 0.13 0.87 8.06 -52.48 -0.42 0.45 16 LS Contribution 336.25 15.07 5.07 5.07 Total: -1.00 -34.49 336.25 -9.21 -43.70 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: -5.93 Total: 1.37 kcal Atomic # 6 Polarization: -25.20 SS G_CDS: -1.63 Total: -26.83 kcal Atomic # 7 Polarization: -35.73 SS G_CDS: 0.42 Total: -35.32 kcal Atomic # 8 Polarization: -12.60 SS G_CDS: -0.60 Total: -13.19 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Atomic # 16 Polarization: 10.77 SS G_CDS: -1.52 Total: 9.25 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -34.49 -9.21 -43.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602489980.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.763 kcal (2) G-P(sol) polarization free energy of solvation -34.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds