Wall clock time and date at job start Tue Mar 31 2020 06:33:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.76201 * 102.99797 * 2 1 4 4 C 1.38917 * 120.02114 * 180.02562 * 3 2 1 5 5 C 1.38090 * 119.97289 * 180.02562 * 4 3 2 6 6 C 1.38711 * 120.02812 * 0.02562 * 5 4 3 7 7 O 1.36002 * 119.97692 * 179.97438 * 6 5 4 8 8 C 1.42905 * 116.99865 * 180.02562 * 7 6 5 9 9 C 1.52995 * 109.47062 * 179.97438 * 8 7 6 10 10 N 1.46910 * 109.47174 * 64.99858 * 9 8 7 11 11 C 1.46897 * 110.99968 * 180.02562 * 10 9 8 12 12 H 1.09007 * 109.47061 * 324.99931 * 11 10 9 13 13 C 1.53000 * 109.47069 * 84.99944 * 11 10 9 14 14 C 1.50693 * 109.47041 * 204.99783 * 11 10 9 15 15 H 1.08002 * 120.00331 * 354.37159 * 14 11 10 16 16 C 1.37885 * 120.00119 * 174.35968 * 14 11 10 17 17 N 1.31516 * 120.00168 * 156.60535 * 16 14 11 18 18 Si 1.86799 * 119.99974 * 336.88923 * 16 14 11 19 19 H 1.48495 * 109.47179 * 179.71887 * 18 16 14 20 20 H 1.48504 * 109.47000 * 299.71811 * 18 16 14 21 21 H 1.48500 * 109.47297 * 59.71926 * 18 16 14 22 22 C 1.38713 * 120.04683 * 0.23148 * 6 5 4 23 23 C 1.38092 * 120.02120 * 359.49082 * 22 6 5 24 24 H 1.09004 * 109.47445 * 60.00004 * 1 2 3 25 25 H 1.09003 * 109.47476 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46907 * 299.99950 * 1 2 3 27 27 H 1.08003 * 120.01806 * 359.97438 * 4 3 2 28 28 H 1.08007 * 119.98415 * 179.97438 * 5 4 3 29 29 H 1.08993 * 109.47085 * 59.99596 * 8 7 6 30 30 H 1.08997 * 109.46598 * 299.99638 * 8 7 6 31 31 H 1.09000 * 109.47506 * 304.99871 * 9 8 7 32 32 H 1.08997 * 109.47060 * 184.99626 * 9 8 7 33 33 H 1.00899 * 110.99576 * 303.94936 * 10 9 8 34 34 H 1.09006 * 109.47378 * 293.10198 * 13 11 10 35 35 H 1.08996 * 109.47246 * 53.10600 * 13 11 10 36 36 H 1.09003 * 109.46967 * 173.10646 * 13 11 10 37 37 H 0.97002 * 119.99516 * 355.21605 * 17 16 14 38 38 H 1.07993 * 119.99024 * 179.75026 * 22 6 5 39 39 H 1.08010 * 120.00870 * 180.25197 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 6 3.5386 2.1236 -0.0005 5 6 3.8481 3.4693 0.0000 6 6 2.8333 4.4149 0.0016 7 8 3.1392 5.7401 0.0027 8 6 2.0445 6.6587 0.0049 9 6 2.5810 8.0915 0.0064 10 7 3.2999 8.3465 -1.2491 11 6 3.8309 9.7158 -1.2829 12 1 3.1372 10.3870 -0.7764 13 6 5.1868 9.7546 -0.5752 14 6 3.9989 10.1542 -2.7148 15 1 3.8246 9.4536 -3.5181 16 6 4.3751 11.4498 -2.9996 17 7 4.9594 11.7284 -4.1444 18 14 4.0621 12.8080 -1.7559 19 1 4.5618 14.0980 -2.2956 20 1 2.6041 12.9126 -1.4937 21 1 4.7714 12.4931 -0.4899 22 6 1.5066 4.0100 0.0075 23 6 1.1948 2.6647 0.0012 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 4.3291 1.3875 -0.0005 28 1 4.8808 3.7857 0.0000 29 1 1.4369 6.4976 0.8953 30 1 1.4350 6.4995 -0.8846 31 1 3.2612 8.2239 0.8478 32 1 1.7498 8.7906 0.0976 33 1 4.0357 7.6702 -1.3883 34 1 5.0477 9.5568 0.4878 35 1 5.8419 8.9959 -1.0032 36 1 5.6367 10.7388 -0.7057 37 1 5.1885 11.0133 -4.7586 38 1 0.7172 4.7470 0.0129 39 1 0.1617 2.3496 0.0017 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602860686.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:18 Heat of formation + Delta-G solvation = -16.151659 kcal Electronic energy + Delta-G solvation = -18978.850217 eV Core-core repulsion = 16012.828307 eV Total energy + Delta-G solvation = -2966.021911 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.16810 -37.71606 -36.05643 -32.78383 -31.61881 -30.77915 -29.91404 -29.03630 -27.03142 -24.71884 -23.33161 -22.74479 -21.25585 -19.96986 -18.50036 -17.53957 -17.43437 -16.03896 -16.01821 -15.23337 -14.89966 -14.49111 -14.23569 -14.11963 -13.97197 -13.72667 -13.50159 -13.05013 -12.86561 -12.68880 -12.27486 -11.99645 -11.92215 -11.70393 -11.35668 -11.16655 -10.92453 -10.74797 -10.53184 -10.41340 -10.04569 -9.74128 -9.32261 -9.15873 -9.02479 -8.15279 -7.46371 -7.41733 -6.41102 -3.97195 1.10065 1.11297 1.27775 2.14494 3.21359 3.39781 3.44260 3.49955 3.61810 4.52581 4.53280 4.64488 4.68156 4.68940 4.84541 4.99754 5.10136 5.21565 5.24386 5.29694 5.34965 5.39097 5.59419 5.72629 5.80479 6.00394 6.04203 6.07349 6.16896 6.30071 6.43925 6.50467 6.64588 6.84906 7.22191 7.37079 7.79628 8.29288 8.37126 8.48929 9.05993 9.67213 10.96011 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.042366 B = 0.002720 C = 0.002697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.754376 B =10293.364505 C =10377.572928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 S -0.128 6.128 3 C -0.130 4.130 4 C -0.058 4.058 5 C -0.137 4.137 6 C 0.141 3.859 7 O -0.309 6.309 8 C 0.061 3.939 9 C 0.057 3.943 10 N -0.674 5.674 11 C 0.189 3.811 12 H 0.024 0.976 13 C -0.176 4.176 14 C -0.589 4.589 15 H 0.063 0.937 16 C 0.033 3.967 17 N -0.902 5.902 18 Si 1.037 2.963 19 H -0.285 1.285 20 H -0.284 1.284 21 H -0.280 1.280 22 C -0.192 4.192 23 C -0.091 4.091 24 H 0.083 0.917 25 H 0.106 0.894 26 H 0.082 0.918 27 H 0.133 0.867 28 H 0.137 0.863 29 H 0.060 0.940 30 H 0.072 0.928 31 H 0.031 0.969 32 H 0.086 0.914 33 H 0.336 0.664 34 H 0.019 0.981 35 H 0.044 0.956 36 H 0.056 0.944 37 H 0.269 0.731 38 H 0.132 0.868 39 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.460 -20.968 11.905 25.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.311 4.311 2 S 0.112 5.888 3 C -0.242 4.242 4 C -0.081 4.081 5 C -0.157 4.157 6 C 0.093 3.907 7 O -0.222 6.222 8 C -0.014 4.014 9 C -0.073 4.073 10 N -0.304 5.304 11 C 0.080 3.920 12 H 0.042 0.958 13 C -0.235 4.235 14 C -0.627 4.627 15 H 0.081 0.919 16 C -0.173 4.173 17 N -0.536 5.536 18 Si 0.865 3.135 19 H -0.211 1.211 20 H -0.211 1.211 21 H -0.206 1.206 22 C -0.213 4.213 23 C -0.114 4.114 24 H 0.102 0.898 25 H 0.125 0.875 26 H 0.101 0.899 27 H 0.151 0.849 28 H 0.155 0.845 29 H 0.078 0.922 30 H 0.090 0.910 31 H 0.049 0.951 32 H 0.105 0.895 33 H 0.154 0.846 34 H 0.038 0.962 35 H 0.063 0.937 36 H 0.075 0.925 37 H 0.079 0.921 38 H 0.150 0.850 39 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -8.081 -20.098 11.771 24.654 hybrid contribution -0.522 -0.572 0.405 0.875 sum -8.604 -20.671 12.177 25.487 Atomic orbital electron populations 1.23641 0.94916 1.06946 1.05605 1.85364 1.06315 1.03579 1.93554 1.21463 0.96584 0.96170 1.09985 1.20538 0.94322 0.95041 0.98235 1.20416 0.99057 0.90874 1.05357 1.19076 0.92959 0.83968 0.94717 1.86135 1.35805 1.12568 1.87658 1.23069 0.88405 0.88746 1.01158 1.22034 0.99395 0.92154 0.93693 1.60809 1.32739 1.06052 1.30839 1.19497 0.89570 0.85416 0.97503 0.95777 1.22818 1.01692 1.01933 0.97085 1.21902 1.50964 0.98807 0.91040 0.91884 1.25651 0.92894 0.99083 0.99649 1.70842 1.34788 1.36912 1.11043 0.84149 0.76907 0.76650 0.75787 1.21095 1.21062 1.20631 1.21192 0.95643 0.96588 1.07839 1.20916 0.98143 0.92329 1.00022 0.89776 0.87532 0.89868 0.84926 0.84487 0.92223 0.90975 0.95136 0.89548 0.84601 0.96205 0.93676 0.92512 0.92117 0.84974 0.85803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.86 9.15 101.05 0.92 0.06 16 2 S -0.13 -1.19 22.56 -107.50 -2.43 -3.61 16 3 C -0.13 -1.42 6.11 -39.08 -0.24 -1.66 16 4 C -0.06 -0.65 9.79 -39.38 -0.39 -1.03 16 5 C -0.14 -1.67 9.98 -39.46 -0.39 -2.07 16 6 C 0.14 1.88 6.69 -39.23 -0.26 1.62 16 7 O -0.31 -4.60 9.66 -19.75 -0.19 -4.79 16 8 C 0.06 0.84 5.08 37.15 0.19 1.03 16 9 C 0.06 0.94 5.90 -3.82 -0.02 0.92 16 10 N -0.67 -14.06 6.23 -107.95 -0.67 -14.74 16 11 C 0.19 4.52 2.17 -68.87 -0.15 4.37 16 12 H 0.02 0.58 6.37 -51.93 -0.33 0.25 16 13 C -0.18 -3.91 8.90 37.16 0.33 -3.58 16 14 C -0.59 -16.77 9.05 -34.44 -0.31 -17.08 16 15 H 0.06 1.97 8.06 -52.49 -0.42 1.55 16 16 C 0.03 0.95 5.19 -17.82 -0.09 0.85 16 17 N -0.90 -27.82 13.70 55.43 0.76 -27.07 16 18 Si 1.04 25.11 26.44 -169.99 -4.50 20.62 16 19 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.28 -6.30 6.15 56.52 0.35 -5.95 16 22 C -0.19 -2.24 9.03 -39.46 -0.36 -2.60 16 23 C -0.09 -0.96 9.36 -39.39 -0.37 -1.33 16 24 H 0.08 0.48 7.75 -51.92 -0.40 0.08 16 25 H 0.11 0.47 8.14 -51.92 -0.42 0.05 16 26 H 0.08 0.45 7.74 -51.92 -0.40 0.05 16 27 H 0.13 1.23 8.06 -52.48 -0.42 0.80 16 28 H 0.14 1.53 8.06 -52.48 -0.42 1.11 16 29 H 0.06 0.66 7.65 -51.93 -0.40 0.26 16 30 H 0.07 0.99 7.67 -51.93 -0.40 0.59 16 31 H 0.03 0.50 7.57 -51.93 -0.39 0.10 16 32 H 0.09 1.35 8.06 -51.93 -0.42 0.93 16 33 H 0.34 7.00 7.94 -39.29 -0.31 6.69 16 34 H 0.02 0.38 7.64 -51.93 -0.40 -0.02 16 35 H 0.04 0.98 8.00 -51.93 -0.42 0.57 16 36 H 0.06 1.32 5.48 -51.93 -0.28 1.04 16 37 H 0.27 8.28 8.73 -40.82 -0.36 7.93 16 38 H 0.13 1.34 6.29 -52.49 -0.33 1.01 16 39 H 0.12 1.02 5.87 -52.48 -0.31 0.72 16 LS Contribution 330.41 15.07 4.98 4.98 Total: -1.00 -31.23 330.41 -8.87 -40.10 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: -5.69 Total: 5.02 kcal Atomic # 6 Polarization: -19.37 SS G_CDS: -1.14 Total: -20.51 kcal Atomic # 7 Polarization: -41.89 SS G_CDS: 0.09 Total: -41.80 kcal Atomic # 8 Polarization: -4.60 SS G_CDS: -0.19 Total: -4.79 kcal Atomic # 14 Polarization: 25.11 SS G_CDS: -4.50 Total: 20.62 kcal Atomic # 16 Polarization: -1.19 SS G_CDS: -2.43 Total: -3.61 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -31.23 -8.87 -40.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602860686.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.949 kcal (2) G-P(sol) polarization free energy of solvation -31.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds