Wall clock time and date at job start Tue Mar 31 2020 06:35:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34230 * 117.00180 * 2 1 4 4 O 1.20835 * 119.99924 * 0.02562 * 3 2 1 5 5 C 1.50698 * 120.00018 * 180.02562 * 3 2 1 6 6 H 1.09001 * 109.46749 * 299.99618 * 5 3 2 7 7 N 1.46904 * 109.47025 * 179.97438 * 5 3 2 8 8 C 1.46906 * 110.99716 * 84.99821 * 7 5 3 9 9 H 1.08996 * 109.46825 * 35.00670 * 8 7 5 10 10 C 1.52997 * 109.47302 * 274.99847 * 8 7 5 11 11 C 1.50699 * 109.46750 * 155.00018 * 8 7 5 12 12 H 1.08003 * 119.99962 * 0.02562 * 11 8 7 13 13 C 1.37874 * 120.00270 * 179.97438 * 11 8 7 14 14 N 1.31516 * 119.99500 * 0.02562 * 13 11 8 15 15 Si 1.86803 * 120.00390 * 179.97438 * 13 11 8 16 16 H 1.48500 * 109.46921 * 60.00425 * 15 13 11 17 17 H 1.48496 * 109.46933 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.46946 * 300.00108 * 15 13 11 19 19 C 1.50694 * 109.47135 * 60.00392 * 5 3 2 20 20 C 1.38245 * 119.98029 * 79.72093 * 19 5 3 21 21 C 1.38194 * 120.02611 * 179.76731 * 20 19 5 22 22 C 1.38460 * 119.97424 * 0.50787 * 21 20 19 23 23 F 1.35104 * 120.02065 * 179.76402 * 22 21 20 24 24 C 1.38459 * 119.94753 * 359.75171 * 22 21 20 25 25 C 1.38193 * 119.97802 * 359.97438 * 24 22 21 26 26 H 1.08997 * 109.47473 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47094 * 299.99830 * 1 2 3 28 28 H 1.09001 * 109.47072 * 59.99743 * 1 2 3 29 29 H 1.00900 * 110.99849 * 321.05218 * 7 5 3 30 30 H 1.09002 * 109.47153 * 180.02562 * 10 8 7 31 31 H 1.09001 * 109.46832 * 60.00356 * 10 8 7 32 32 H 1.09004 * 109.47261 * 300.00337 * 10 8 7 33 33 H 0.97002 * 119.99804 * 180.02562 * 14 13 11 34 34 H 1.08002 * 119.98042 * 0.02602 * 20 19 5 35 35 H 1.07998 * 120.01083 * 180.25784 * 21 20 19 36 36 H 1.08001 * 120.01035 * 179.97438 * 24 22 21 37 37 H 1.07994 * 119.98899 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9563 0.7805 0.8892 7 7 3.9829 2.6836 -0.0011 8 6 4.0180 3.2226 1.3651 9 1 4.3419 2.4433 2.0548 10 6 2.6203 3.7042 1.7594 11 6 4.9829 4.3786 1.4242 12 1 5.5164 4.6828 0.5357 13 6 5.1840 5.0487 2.6123 14 7 4.5340 4.6787 3.6940 15 14 6.3806 6.4813 2.6858 16 1 5.9402 7.5428 1.7453 17 1 6.4160 7.0262 4.0667 18 1 7.7371 6.0131 2.3039 19 6 4.1046 0.5920 -1.2314 20 6 4.0984 1.2521 -2.4461 21 6 4.5963 0.6286 -3.5744 22 6 5.0917 -0.6616 -3.4902 23 9 5.5742 -1.2737 -4.5937 24 6 5.0925 -1.3237 -2.2742 25 6 4.5994 -0.6962 -1.1460 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 3.3826 3.2379 -0.5931 30 1 2.6465 4.1046 2.7729 31 1 1.9224 2.8680 1.7166 32 1 2.2964 4.4835 1.0695 33 1 4.6751 5.1503 4.5298 34 1 3.7082 2.2569 -2.5123 35 1 4.5951 1.1460 -4.5224 36 1 5.4783 -2.3302 -2.2074 37 1 4.6002 -1.2122 -0.1973 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602868632.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:43 Heat of formation + Delta-G solvation = -95.333248 kcal Electronic energy + Delta-G solvation = -22146.397018 eV Core-core repulsion = 18610.728359 eV Total energy + Delta-G solvation = -3535.668658 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.85135 -40.56789 -38.86790 -36.82865 -35.33749 -33.09200 -31.15916 -30.95933 -28.34044 -27.65373 -25.28182 -24.89103 -22.98049 -22.12229 -20.65265 -19.99581 -17.72209 -17.45038 -16.96324 -16.61470 -16.14405 -16.00817 -15.53337 -15.14097 -14.73819 -14.23326 -13.87861 -13.61752 -13.43016 -13.18972 -12.84492 -12.75420 -12.27208 -12.15534 -11.80127 -11.62998 -11.56827 -10.93633 -10.90878 -10.89710 -10.70574 -10.47645 -10.31218 -9.96751 -9.91173 -9.02524 -8.96738 -8.47807 -8.35573 -7.66221 -6.00304 -4.04358 1.16884 1.32552 2.46369 2.95691 3.34387 3.38166 3.41423 3.68036 4.30667 4.41279 4.71420 4.80534 4.91948 4.99913 5.17081 5.22723 5.25329 5.31321 5.37563 5.46996 5.59674 5.62720 5.96838 6.03135 6.17104 6.29979 6.54029 6.61185 6.73826 6.93468 7.02691 7.09845 7.25785 7.75049 7.80074 7.97328 8.17769 8.33739 8.48643 9.00637 9.60344 11.06449 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.015907 B = 0.005296 C = 0.004253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.817960 B = 5285.675630 C = 6582.224108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.361 6.361 3 C 0.429 3.571 4 O -0.486 6.486 5 C 0.137 3.863 6 H 0.121 0.879 7 N -0.646 5.646 8 C 0.208 3.792 9 H 0.035 0.965 10 C -0.166 4.166 11 C -0.498 4.498 12 H 0.063 0.937 13 C 0.058 3.942 14 N -0.895 5.895 15 Si 0.900 3.100 16 H -0.278 1.278 17 H -0.289 1.289 18 H -0.277 1.277 19 C -0.069 4.069 20 C -0.063 4.063 21 C -0.155 4.155 22 C 0.091 3.909 23 F -0.145 7.145 24 C -0.156 4.156 25 C -0.072 4.072 26 H 0.095 0.905 27 H 0.060 0.940 28 H 0.058 0.942 29 H 0.341 0.659 30 H 0.082 0.918 31 H 0.020 0.980 32 H 0.029 0.971 33 H 0.261 0.739 34 H 0.134 0.866 35 H 0.133 0.867 36 H 0.134 0.866 37 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.103 -12.166 -9.927 16.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.277 6.277 3 C 0.269 3.731 4 O -0.372 6.372 5 C 0.024 3.976 6 H 0.138 0.862 7 N -0.277 5.277 8 C 0.101 3.899 9 H 0.052 0.948 10 C -0.225 4.225 11 C -0.536 4.536 12 H 0.081 0.919 13 C -0.143 4.143 14 N -0.535 5.535 15 Si 0.728 3.272 16 H -0.203 1.203 17 H -0.215 1.215 18 H -0.202 1.202 19 C -0.070 4.070 20 C -0.082 4.082 21 C -0.174 4.174 22 C 0.072 3.928 23 F -0.124 7.124 24 C -0.174 4.174 25 C -0.091 4.091 26 H 0.114 0.886 27 H 0.079 0.921 28 H 0.077 0.923 29 H 0.161 0.839 30 H 0.100 0.900 31 H 0.039 0.961 32 H 0.048 0.952 33 H 0.070 0.930 34 H 0.152 0.848 35 H 0.151 0.849 36 H 0.151 0.849 37 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -3.657 -11.950 -9.771 15.864 hybrid contribution -0.513 0.905 0.197 1.059 sum -4.170 -11.045 -9.574 15.200 Atomic orbital electron populations 1.23185 0.77509 1.03071 1.02285 1.86566 1.22632 1.34241 1.84242 1.25460 0.93652 0.81402 0.72570 1.90689 1.66785 1.36022 1.43728 1.20506 0.84064 0.95333 0.97722 0.86155 1.61330 1.52597 0.97800 1.15937 1.19390 0.93374 0.95144 0.82008 0.94756 1.22548 0.97112 0.99023 1.03859 1.21015 1.23106 1.13878 0.95630 0.91861 1.24925 0.96269 0.97525 0.95617 1.69886 1.42008 1.41362 1.00217 0.86537 0.81472 0.82417 0.76811 1.20345 1.21457 1.20249 1.19572 0.99545 0.93940 0.93965 1.20873 0.96717 0.99657 0.90904 1.21084 1.02201 0.93882 1.00256 1.17727 0.99781 0.92260 0.83026 1.91474 1.85988 1.83031 1.51915 1.21027 1.03783 1.01147 0.91475 1.20876 0.96118 0.93756 0.98333 0.88627 0.92109 0.92304 0.83865 0.89960 0.96126 0.95180 0.92965 0.84811 0.84902 0.84851 0.84708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.56 101.05 1.07 1.46 16 2 O -0.36 -5.31 10.48 -39.26 -0.41 -5.72 16 3 C 0.43 7.32 6.52 36.00 0.23 7.55 16 4 O -0.49 -9.48 12.16 -18.76 -0.23 -9.70 16 5 C 0.14 2.32 2.70 -70.02 -0.19 2.13 16 6 H 0.12 2.01 7.29 -51.93 -0.38 1.63 16 7 N -0.65 -13.08 5.47 -103.40 -0.57 -13.65 16 8 C 0.21 5.08 2.57 -68.86 -0.18 4.91 16 9 H 0.03 0.90 7.43 -51.93 -0.39 0.52 16 10 C -0.17 -4.10 7.78 37.16 0.29 -3.82 16 11 C -0.50 -13.50 8.84 -34.44 -0.30 -13.80 16 12 H 0.06 1.72 7.81 -52.48 -0.41 1.31 16 13 C 0.06 1.58 5.30 -17.82 -0.09 1.49 16 14 N -0.90 -25.38 11.32 55.43 0.63 -24.75 16 15 Si 0.90 21.35 29.54 -169.99 -5.02 16.32 16 16 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 17 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 18 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 19 C -0.07 -1.01 4.88 -104.62 -0.51 -1.52 16 20 C -0.06 -0.88 9.31 -39.60 -0.37 -1.25 16 21 C -0.16 -1.97 10.03 -39.52 -0.40 -2.37 16 22 C 0.09 1.17 7.30 -39.42 -0.29 0.88 16 23 F -0.15 -1.88 17.27 2.25 0.04 -1.84 16 24 C -0.16 -1.84 10.03 -39.52 -0.40 -2.23 16 25 C -0.07 -0.91 9.67 -39.59 -0.38 -1.29 16 26 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.06 0.73 8.13 -51.93 -0.42 0.31 16 28 H 0.06 0.67 8.13 -51.93 -0.42 0.24 16 29 H 0.34 6.88 6.86 -39.29 -0.27 6.62 16 30 H 0.08 2.24 6.07 -51.93 -0.32 1.93 16 31 H 0.02 0.47 5.07 -51.93 -0.26 0.21 16 32 H 0.03 0.74 8.13 -51.93 -0.42 0.32 16 33 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 34 H 0.13 1.85 7.25 -52.49 -0.38 1.47 16 35 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 36 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 37 H 0.14 1.42 8.03 -52.49 -0.42 1.00 16 LS Contribution 315.81 15.07 4.76 4.76 Total: -1.00 -29.80 315.81 -6.81 -36.62 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: -4.49 Total: 5.84 kcal Atomic # 6 Polarization: -6.36 SS G_CDS: -1.52 Total: -7.88 kcal Atomic # 7 Polarization: -38.46 SS G_CDS: 0.06 Total: -38.40 kcal Atomic # 8 Polarization: -14.79 SS G_CDS: -0.64 Total: -15.43 kcal Atomic # 9 Polarization: -1.88 SS G_CDS: 0.04 Total: -1.84 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -29.80 -6.81 -36.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602868632.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.717 kcal (2) G-P(sol) polarization free energy of solvation -29.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds