Wall clock time and date at job start Tue Mar 31 2020 06:35:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45191 * 1 3 3 C 1.34236 * 116.99964 * 2 1 4 4 O 1.20822 * 119.99976 * 359.97438 * 3 2 1 5 5 C 1.50704 * 119.99971 * 179.97438 * 3 2 1 6 6 H 1.08997 * 109.46707 * 59.99883 * 5 3 2 7 7 N 1.46893 * 109.46877 * 179.97438 * 5 3 2 8 8 C 1.46900 * 111.00285 * 274.99978 * 7 5 3 9 9 H 1.08999 * 109.47135 * 325.00108 * 8 7 5 10 10 C 1.53003 * 109.47099 * 85.00114 * 8 7 5 11 11 C 1.50695 * 109.47685 * 205.00073 * 8 7 5 12 12 H 1.08004 * 119.99817 * 0.02562 * 11 8 7 13 13 C 1.37872 * 120.00727 * 179.97438 * 11 8 7 14 14 N 1.31516 * 119.99486 * 0.02562 * 13 11 8 15 15 Si 1.86792 * 120.00728 * 180.02562 * 13 11 8 16 16 H 1.48504 * 109.47016 * 0.02562 * 15 13 11 17 17 H 1.48497 * 109.47329 * 119.99652 * 15 13 11 18 18 H 1.48498 * 109.47429 * 240.00299 * 15 13 11 19 19 C 1.50696 * 109.47085 * 299.99687 * 5 3 2 20 20 C 1.38248 * 119.97128 * 100.00033 * 19 5 3 21 21 C 1.38196 * 120.02483 * 179.97438 * 20 19 5 22 22 C 1.38458 * 119.97492 * 0.02562 * 21 20 19 23 23 F 1.35104 * 120.02786 * 179.97438 * 22 21 20 24 24 C 1.38465 * 119.94675 * 0.24873 * 22 21 20 25 25 C 1.38196 * 119.97501 * 359.51590 * 24 22 21 26 26 H 1.08996 * 109.47623 * 300.00581 * 1 2 3 27 27 H 1.09001 * 109.46996 * 60.00333 * 1 2 3 28 28 H 1.09004 * 109.47004 * 180.02562 * 1 2 3 29 29 H 1.00899 * 111.00365 * 151.04487 * 7 5 3 30 30 H 1.08999 * 109.47389 * 180.02562 * 10 8 7 31 31 H 1.09003 * 109.47302 * 299.99963 * 10 8 7 32 32 H 1.08999 * 109.47132 * 59.99992 * 10 8 7 33 33 H 0.97003 * 119.99908 * 179.97438 * 14 13 11 34 34 H 1.08001 * 119.98881 * 0.02562 * 20 19 5 35 35 H 1.07996 * 120.01603 * 179.97438 * 21 20 19 36 36 H 1.08007 * 120.01064 * 179.75151 * 24 22 21 37 37 H 1.07993 * 119.98776 * 180.24915 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9563 0.7806 -0.8891 7 7 3.9827 2.6836 -0.0002 8 6 4.0180 3.2215 -1.3667 9 1 4.3419 2.4417 -2.0559 10 6 2.6203 3.7027 -1.7615 11 6 4.9828 4.3775 -1.4269 12 1 5.5168 4.6820 -0.5389 13 6 5.1847 5.0459 -2.6157 14 7 4.5347 4.6749 -3.6972 15 14 6.3811 6.4784 -2.6906 16 1 6.9799 6.6938 -1.3487 17 1 7.4564 6.1747 -3.6687 18 1 5.6590 7.7051 -3.1136 19 6 4.1046 0.5921 1.2314 20 6 4.5990 -0.6961 1.1461 21 6 5.0934 -1.3231 2.2740 22 6 5.0930 -0.6609 3.4900 23 9 5.5756 -1.2730 4.5934 24 6 4.5923 0.6273 3.5753 25 6 4.1029 1.2541 2.4450 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 4.8755 2.7971 0.4562 30 1 2.6463 4.1014 -2.7756 31 1 1.9223 2.8666 -1.7181 32 1 2.2963 4.4826 -1.0723 33 1 4.6764 5.1453 -4.5336 34 1 4.5997 -1.2124 0.1975 35 1 5.4793 -2.3296 2.2073 36 1 4.5878 1.1433 4.5240 37 1 3.7161 2.2602 2.5106 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602868645.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:48 Heat of formation + Delta-G solvation = -92.459418 kcal Electronic energy + Delta-G solvation = -22135.332777 eV Core-core repulsion = 18599.788737 eV Total energy + Delta-G solvation = -3535.544039 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -48.91985 -40.33832 -38.92737 -36.56310 -35.29978 -33.13031 -31.19220 -30.93557 -28.28699 -27.68001 -25.55301 -24.77859 -23.03662 -22.14800 -20.58550 -19.54374 -17.81793 -17.31897 -16.88801 -16.33806 -16.22128 -15.97028 -15.59761 -15.03629 -14.76228 -14.20369 -13.79261 -13.69491 -13.52623 -13.19005 -13.07959 -12.67833 -12.40935 -12.22331 -11.83994 -11.65858 -11.27294 -11.03465 -10.93254 -10.75680 -10.52486 -10.35522 -10.10572 -10.04445 -9.60238 -9.10123 -8.80142 -8.56145 -8.47192 -7.55720 -6.04855 -4.12040 1.07191 1.24558 2.70969 2.99550 3.27716 3.35796 3.39543 3.60294 4.23322 4.37531 4.67692 4.74097 4.86479 5.06869 5.23238 5.27149 5.29158 5.33694 5.34904 5.47090 5.66560 5.67437 5.90503 5.97383 6.10582 6.23712 6.51814 6.70280 6.85647 6.87883 7.24448 7.28140 7.46369 7.74590 7.87058 8.19239 8.24566 8.37144 8.51760 8.95519 9.53676 11.01071 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.015914 B = 0.005298 C = 0.004252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.064198 B = 5283.304789 C = 6584.318553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.368 6.368 3 C 0.457 3.543 4 O -0.460 6.460 5 C 0.143 3.857 6 H 0.084 0.916 7 N -0.664 5.664 8 C 0.212 3.788 9 H 0.003 0.997 10 C -0.122 4.122 11 C -0.519 4.519 12 H 0.061 0.939 13 C 0.063 3.937 14 N -0.888 5.888 15 Si 0.898 3.102 16 H -0.273 1.273 17 H -0.285 1.285 18 H -0.284 1.284 19 C -0.094 4.094 20 C -0.070 4.070 21 C -0.157 4.157 22 C 0.095 3.905 23 F -0.144 7.144 24 C -0.156 4.156 25 C -0.065 4.065 26 H 0.058 0.942 27 H 0.060 0.940 28 H 0.094 0.906 29 H 0.347 0.653 30 H 0.073 0.927 31 H 0.017 0.983 32 H 0.033 0.967 33 H 0.261 0.739 34 H 0.136 0.864 35 H 0.135 0.865 36 H 0.135 0.865 37 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.484 -12.486 9.964 16.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.285 6.285 3 C 0.296 3.704 4 O -0.343 6.343 5 C 0.031 3.969 6 H 0.101 0.899 7 N -0.299 5.299 8 C 0.105 3.895 9 H 0.020 0.980 10 C -0.181 4.181 11 C -0.557 4.557 12 H 0.080 0.920 13 C -0.139 4.139 14 N -0.526 5.526 15 Si 0.726 3.274 16 H -0.197 1.197 17 H -0.211 1.211 18 H -0.210 1.210 19 C -0.095 4.095 20 C -0.088 4.088 21 C -0.176 4.176 22 C 0.076 3.924 23 F -0.123 7.123 24 C -0.175 4.175 25 C -0.083 4.083 26 H 0.077 0.923 27 H 0.079 0.921 28 H 0.113 0.887 29 H 0.168 0.832 30 H 0.091 0.909 31 H 0.036 0.964 32 H 0.052 0.948 33 H 0.071 0.929 34 H 0.153 0.847 35 H 0.152 0.848 36 H 0.153 0.847 37 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -3.352 -11.881 9.928 15.841 hybrid contribution 1.228 0.343 -0.333 1.317 sum -2.124 -11.538 9.595 15.156 Atomic orbital electron populations 1.23137 0.77315 1.02900 1.02309 1.86491 1.22617 1.34342 1.85045 1.23715 0.91810 0.81125 0.73710 1.90667 1.66295 1.35790 1.41557 1.19878 0.87716 0.93387 0.95951 0.89859 1.60441 1.35398 1.10078 1.23943 1.19309 0.94844 0.94035 0.81283 0.97982 1.21843 0.95417 0.98853 1.01946 1.21218 1.23476 1.15447 0.95573 0.92035 1.24898 0.96093 0.97344 0.95560 1.69923 1.41518 1.41004 1.00182 0.86448 0.80701 0.82244 0.78038 1.19722 1.21102 1.20964 1.19759 1.00437 0.94654 0.94614 1.20932 0.95772 0.93712 0.98414 1.21049 1.03863 1.01174 0.91476 1.17772 0.99358 0.92254 0.83014 1.91482 1.85902 1.83013 1.51876 1.21146 1.02107 0.93885 1.00353 1.21077 0.96096 1.00532 0.90608 0.92332 0.92123 0.88734 0.83189 0.90884 0.96394 0.94787 0.92945 0.84662 0.84759 0.84717 0.83670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.46 10.56 101.05 1.07 1.52 16 2 O -0.37 -5.67 10.48 -39.27 -0.41 -6.08 16 3 C 0.46 8.30 6.57 36.01 0.24 8.54 16 4 O -0.46 -9.72 12.77 -18.75 -0.24 -9.96 16 5 C 0.14 2.48 2.73 -70.02 -0.19 2.28 16 6 H 0.08 1.44 7.29 -51.93 -0.38 1.06 16 7 N -0.66 -13.60 5.21 -103.40 -0.54 -14.14 16 8 C 0.21 5.27 2.60 -68.87 -0.18 5.09 16 9 H 0.00 0.07 7.43 -51.93 -0.39 -0.32 16 10 C -0.12 -3.16 8.01 37.16 0.30 -2.86 16 11 C -0.52 -13.94 8.59 -34.44 -0.30 -14.24 16 12 H 0.06 1.62 7.62 -52.48 -0.40 1.22 16 13 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 14 N -0.89 -25.21 11.32 55.43 0.63 -24.58 16 15 Si 0.90 21.08 29.54 -169.99 -5.02 16.06 16 16 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 17 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 18 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 19 C -0.09 -1.35 4.64 -104.62 -0.49 -1.83 16 20 C -0.07 -0.86 9.67 -39.59 -0.38 -1.24 16 21 C -0.16 -1.79 10.03 -39.52 -0.40 -2.19 16 22 C 0.10 1.18 7.30 -39.42 -0.29 0.89 16 23 F -0.14 -1.80 17.27 2.25 0.04 -1.77 16 24 C -0.16 -1.91 10.03 -39.51 -0.40 -2.31 16 25 C -0.06 -0.89 9.00 -39.59 -0.36 -1.25 16 26 H 0.06 0.70 8.13 -51.93 -0.42 0.27 16 27 H 0.06 0.76 8.13 -51.93 -0.42 0.34 16 28 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.35 6.76 7.48 -39.29 -0.29 6.46 16 30 H 0.07 2.04 6.07 -51.93 -0.32 1.72 16 31 H 0.02 0.43 5.08 -51.93 -0.26 0.17 16 32 H 0.03 0.90 8.14 -51.93 -0.42 0.47 16 33 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 34 H 0.14 1.42 8.04 -52.49 -0.42 1.00 16 35 H 0.13 1.23 8.06 -52.49 -0.42 0.80 16 36 H 0.13 1.39 8.06 -52.48 -0.42 0.97 16 37 H 0.15 2.08 7.72 -52.49 -0.41 1.67 16 LS Contribution 316.62 15.07 4.77 4.77 Total: -1.00 -30.36 316.62 -6.77 -37.13 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: -4.53 Total: 4.53 kcal Atomic # 6 Polarization: -4.50 SS G_CDS: -1.46 Total: -5.96 kcal Atomic # 7 Polarization: -38.81 SS G_CDS: 0.09 Total: -38.72 kcal Atomic # 8 Polarization: -15.39 SS G_CDS: -0.65 Total: -16.04 kcal Atomic # 9 Polarization: -1.80 SS G_CDS: 0.04 Total: -1.77 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -30.36 -6.77 -37.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602868645.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.325 kcal (2) G-P(sol) polarization free energy of solvation -30.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds