Wall clock time and date at job start Tue Mar 31 2020 06:39:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47355 * 2 1 4 4 C 1.50704 * 109.47086 * 119.99754 * 2 1 3 5 5 H 1.07992 * 120.00120 * 116.68964 * 4 2 1 6 6 C 1.37875 * 119.99522 * 296.68843 * 4 2 1 7 7 N 1.31513 * 120.00501 * 352.38401 * 6 4 2 8 8 Si 1.86806 * 119.99715 * 172.66612 * 6 4 2 9 9 H 1.48497 * 109.47165 * 264.79730 * 8 6 4 10 10 H 1.48503 * 109.46939 * 24.79275 * 8 6 4 11 11 H 1.48498 * 109.47436 * 144.79640 * 8 6 4 12 12 N 1.46497 * 109.47488 * 239.99998 * 2 1 3 13 13 C 1.34780 * 120.00312 * 84.99823 * 12 2 1 14 14 O 1.21279 * 119.99812 * 0.02562 * 13 12 2 15 15 C 1.50703 * 119.99852 * 180.02562 * 13 12 2 16 16 C 1.52999 * 109.46585 * 180.02562 * 15 13 12 17 17 O 1.42900 * 109.46904 * 180.02562 * 16 15 13 18 18 C 1.35897 * 117.00162 * 179.97438 * 17 16 15 19 19 C 1.38775 * 120.04298 * 359.72393 * 18 17 16 20 20 C 1.38126 * 119.99498 * 179.74418 * 19 18 17 21 21 C 1.38255 * 120.08013 * 0.53147 * 20 19 18 22 22 C 1.38471 * 120.08396 * 359.74136 * 21 20 19 23 23 F 1.35104 * 119.99674 * 179.97438 * 22 21 20 24 24 C 1.38388 * 120.00692 * 359.97438 * 22 21 20 25 25 H 1.09001 * 109.47019 * 57.81936 * 1 2 3 26 26 H 1.09001 * 109.47267 * 177.81203 * 1 2 3 27 27 H 1.08995 * 109.47232 * 297.82001 * 1 2 3 28 28 H 0.96997 * 120.00137 * 180.27656 * 7 6 4 29 29 H 0.97006 * 119.99727 * 264.99964 * 12 2 1 30 30 H 1.09000 * 109.46993 * 299.99949 * 15 13 12 31 31 H 1.09000 * 109.46898 * 60.00268 * 15 13 12 32 32 H 1.09000 * 109.47289 * 299.99616 * 16 15 13 33 33 H 1.08992 * 109.47521 * 59.99801 * 16 15 13 34 34 H 1.07994 * 119.99865 * 0.02562 * 19 18 17 35 35 H 1.08003 * 119.96162 * 180.27348 * 20 19 18 36 36 H 1.08005 * 119.95649 * 179.76661 * 21 20 19 37 37 H 1.08000 * 120.03802 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6083 -1.6185 1.1324 6 6 1.7564 -0.2007 2.4815 7 7 1.1871 0.9789 2.6002 8 14 2.1985 -1.1822 4.0082 9 1 1.0150 -1.9586 4.4575 10 1 3.3110 -2.1140 3.6927 11 1 2.6209 -0.2546 5.0881 12 7 2.0184 -0.6906 -1.1961 13 6 2.1471 -0.0183 -2.3571 14 8 1.8591 1.1585 -2.4115 15 6 2.6490 -0.7289 -3.5877 16 6 2.7012 0.2544 -4.7587 17 8 3.1766 -0.4196 -5.9257 18 6 3.2827 0.3166 -7.0631 19 6 2.9308 1.6590 -7.0572 20 6 3.0441 2.4076 -8.2125 21 6 3.4974 1.8185 -9.3783 22 6 3.8440 0.4779 -9.3893 23 9 4.2863 -0.0961 -10.5296 24 6 3.7375 -0.2740 -8.2324 25 1 -0.3633 0.5473 -0.8698 26 1 -0.3634 -1.0269 -0.0392 27 1 -0.3633 0.4796 0.9088 28 1 0.9967 1.3391 3.4805 29 1 2.2491 -1.6318 -1.1525 30 1 3.6482 -1.1214 -3.3984 31 1 1.9761 -1.5507 -3.8325 32 1 1.7023 0.6472 -4.9481 33 1 3.3742 1.0759 -4.5136 34 1 2.5728 2.1194 -6.1483 35 1 2.7743 3.4533 -8.2062 36 1 3.5816 2.4048 -10.2814 37 1 4.0081 -1.3195 -8.2403 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000604573903.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:14 Heat of formation + Delta-G solvation = -107.995976 kcal Electronic energy + Delta-G solvation = -20653.344163 eV Core-core repulsion = 17117.126408 eV Total energy + Delta-G solvation = -3536.217755 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -49.16544 -40.33416 -39.01123 -37.43764 -34.91891 -32.55142 -32.09671 -30.86525 -29.84646 -28.82191 -25.31201 -24.70786 -23.14803 -22.13681 -20.86885 -19.51360 -18.83622 -17.13712 -16.82074 -16.46304 -16.43372 -16.14818 -15.78719 -15.54404 -15.20793 -14.54428 -14.49009 -14.14561 -13.98086 -13.08254 -12.97938 -12.80751 -12.46593 -12.29360 -11.97742 -11.83465 -11.72234 -11.14043 -11.08087 -11.04552 -10.83818 -10.78962 -10.39989 -10.32365 -9.20400 -9.15078 -9.13449 -8.57146 -8.53347 -8.03098 -6.19154 -4.25900 0.87126 1.03560 2.75131 3.21228 3.24370 3.29109 3.30907 3.33910 3.99841 4.19842 4.37219 4.48285 4.72646 4.77060 4.83787 4.96181 5.06643 5.11885 5.14844 5.29726 5.61141 5.68086 5.74987 5.75923 5.81265 5.98699 6.08993 6.46753 6.71258 6.84129 7.03184 7.13708 7.34522 7.47108 7.62084 7.79714 8.01874 8.56120 8.71828 9.00598 9.40674 10.89003 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.049997 B = 0.002535 C = 0.002466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.894334 B =11044.888017 C =11349.922332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.262 3.738 3 H 0.054 0.946 4 C -0.537 4.537 5 H 0.062 0.938 6 C 0.068 3.932 7 N -0.882 5.882 8 Si 0.900 3.100 9 H -0.279 1.279 10 H -0.273 1.273 11 H -0.285 1.285 12 N -0.705 5.705 13 C 0.506 3.494 14 O -0.558 6.558 15 C -0.142 4.142 16 C 0.075 3.925 17 O -0.313 6.313 18 C 0.167 3.833 19 C -0.217 4.217 20 C -0.049 4.049 21 C -0.197 4.197 22 C 0.135 3.865 23 F -0.137 7.137 24 C -0.194 4.194 25 H 0.018 0.982 26 H 0.028 0.972 27 H 0.078 0.922 28 H 0.265 0.735 29 H 0.391 0.609 30 H 0.100 0.900 31 H 0.099 0.901 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.141 0.859 35 H 0.136 0.864 36 H 0.135 0.865 37 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.664 -1.563 -19.769 20.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.161 3.839 3 H 0.072 0.928 4 C -0.575 4.575 5 H 0.080 0.920 6 C -0.136 4.136 7 N -0.519 5.519 8 Si 0.727 3.273 9 H -0.205 1.205 10 H -0.198 1.198 11 H -0.211 1.211 12 N -0.352 5.352 13 C 0.291 3.709 14 O -0.438 6.438 15 C -0.182 4.182 16 C 0.000 4.000 17 O -0.227 6.227 18 C 0.121 3.879 19 C -0.236 4.236 20 C -0.068 4.068 21 C -0.216 4.216 22 C 0.116 3.884 23 F -0.115 7.115 24 C -0.213 4.213 25 H 0.037 0.963 26 H 0.048 0.952 27 H 0.097 0.903 28 H 0.075 0.925 29 H 0.223 0.777 30 H 0.118 0.882 31 H 0.118 0.882 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.158 0.842 35 H 0.154 0.846 36 H 0.153 0.847 37 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 3.440 -0.811 -19.611 19.927 hybrid contribution 0.302 -0.916 0.812 1.260 sum 3.742 -1.727 -18.800 19.246 Atomic orbital electron populations 1.22021 0.98675 0.98821 1.00674 1.18780 0.90749 0.94421 0.79979 0.92815 1.21194 1.35549 1.10480 0.90308 0.91982 1.24896 0.94912 0.94712 0.99087 1.69964 1.41984 1.15823 1.24110 0.86462 0.78674 0.79821 0.82321 1.20520 1.19796 1.21085 1.46502 1.64657 1.13689 1.10394 1.20055 0.78870 0.87398 0.84616 1.90674 1.51752 1.16057 1.85292 1.21530 1.04508 0.99579 0.92627 1.22568 1.00386 0.95145 0.81878 1.85991 1.80812 1.38908 1.16948 1.18605 0.93324 0.89844 0.86175 1.21512 1.07595 0.93657 1.00867 1.20822 0.94972 0.99930 0.91039 1.21037 1.06630 0.93566 1.00363 1.17271 0.98052 0.91411 0.81713 1.91509 1.86844 1.85030 1.48147 1.20243 1.09012 1.01827 0.90258 0.96273 0.95239 0.90349 0.92521 0.77677 0.88169 0.88246 0.90732 0.90667 0.84153 0.84590 0.84726 0.83952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.43 9.32 37.16 0.35 -3.08 16 2 C 0.26 6.47 2.45 -69.08 -0.17 6.30 16 3 H 0.05 1.54 7.57 -51.93 -0.39 1.15 16 4 C -0.54 -13.91 8.69 -34.44 -0.30 -14.21 16 5 H 0.06 1.53 7.73 -52.49 -0.41 1.13 16 6 C 0.07 1.79 5.21 -17.82 -0.09 1.70 16 7 N -0.88 -24.64 11.92 55.43 0.66 -23.98 16 8 Si 0.90 20.29 29.54 -169.99 -5.02 15.27 16 9 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 10 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 11 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 12 N -0.70 -13.87 5.07 -54.93 -0.28 -14.15 16 13 C 0.51 9.30 7.79 -10.98 -0.09 9.21 16 14 O -0.56 -12.38 15.64 5.56 0.09 -12.29 16 15 C -0.14 -1.85 6.07 -27.88 -0.17 -2.01 16 16 C 0.08 0.96 4.03 37.16 0.15 1.11 16 17 O -0.31 -3.89 10.14 -19.42 -0.20 -4.09 16 18 C 0.17 1.95 6.69 -39.22 -0.26 1.69 16 19 C -0.22 -2.30 9.04 -39.42 -0.36 -2.66 16 20 C -0.05 -0.44 10.04 -39.62 -0.40 -0.84 16 21 C -0.20 -1.79 10.02 -39.49 -0.40 -2.18 16 22 C 0.13 1.41 7.30 -39.44 -0.29 1.12 16 23 F -0.14 -1.47 17.27 2.25 0.04 -1.43 16 24 C -0.19 -2.11 9.97 -39.37 -0.39 -2.50 16 25 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.08 2.04 6.60 -51.93 -0.34 1.70 16 28 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 29 H 0.39 6.54 8.53 -40.82 -0.35 6.19 16 30 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.07 0.96 7.61 -51.93 -0.39 0.56 16 33 H 0.08 0.98 7.63 -51.93 -0.40 0.58 16 34 H 0.14 1.44 6.30 -52.49 -0.33 1.11 16 35 H 0.14 0.87 8.06 -52.48 -0.42 0.45 16 36 H 0.13 0.94 8.06 -52.48 -0.42 0.52 16 37 H 0.14 1.39 8.06 -52.49 -0.42 0.97 16 LS Contribution 324.52 15.07 4.89 4.89 Total: -1.00 -30.06 324.52 -6.94 -37.00 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: -4.71 Total: 5.14 kcal Atomic # 6 Polarization: -3.95 SS G_CDS: -2.41 Total: -6.36 kcal Atomic # 7 Polarization: -38.51 SS G_CDS: 0.38 Total: -38.13 kcal Atomic # 8 Polarization: -16.27 SS G_CDS: -0.11 Total: -16.38 kcal Atomic # 9 Polarization: -1.47 SS G_CDS: 0.04 Total: -1.43 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -30.06 -6.94 -37.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000604573903.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.998 kcal (2) G-P(sol) polarization free energy of solvation -30.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds