Wall clock time and date at job start Tue Mar 31 2020 05:34:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47104 * 2 1 4 4 N 1.46495 * 109.46923 * 119.99919 * 2 1 3 5 5 C 1.46502 * 120.00423 * 117.33253 * 4 2 1 6 6 C 1.50702 * 109.47345 * 91.58757 * 5 4 2 7 7 H 1.07997 * 119.99686 * 0.02562 * 6 5 4 8 8 C 1.37869 * 119.99757 * 180.02562 * 6 5 4 9 9 N 1.31511 * 120.00311 * 0.02562 * 8 6 5 10 10 Si 1.86811 * 119.99862 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.46898 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.46693 * 120.00221 * 10 8 6 13 13 H 1.48490 * 109.47111 * 240.00362 * 10 8 6 14 14 C 1.34783 * 120.00293 * 297.32742 * 4 2 1 15 15 O 1.21698 * 119.99485 * 5.94015 * 14 4 2 16 16 C 1.46670 * 120.00150 * 185.94096 * 14 4 2 17 17 C 1.37879 * 126.22955 * 187.11674 * 16 14 4 18 18 C 1.39840 * 107.08165 * 179.88130 * 17 16 14 19 19 N 1.48014 * 126.06758 * 180.10622 * 18 17 16 20 20 O 1.21799 * 120.00254 * 180.30153 * 19 18 17 21 21 O 1.21793 * 119.99746 * 0.30336 * 19 18 17 22 22 C 1.35450 * 107.86706 * 0.38680 * 18 17 16 23 23 N 1.35537 * 108.87148 * 359.75774 * 22 18 17 24 24 H 0.96992 * 125.68052 * 179.97438 * 23 22 18 25 25 H 1.09004 * 109.47266 * 297.17254 * 1 2 3 26 26 H 1.09002 * 109.47593 * 57.17070 * 1 2 3 27 27 H 1.09004 * 109.47116 * 177.17189 * 1 2 3 28 28 H 1.08998 * 109.46789 * 239.99749 * 2 1 3 29 29 H 1.09001 * 109.47338 * 184.47632 * 3 2 1 30 30 H 1.09004 * 109.47406 * 304.48037 * 3 2 1 31 31 H 1.08998 * 109.47581 * 64.47599 * 3 2 1 32 32 H 1.09000 * 109.47484 * 211.59433 * 5 4 2 33 33 H 1.09004 * 109.46455 * 331.59126 * 5 4 2 34 34 H 0.97007 * 120.00152 * 180.02562 * 9 8 6 35 35 H 1.07993 * 126.46112 * 359.97438 * 17 16 14 36 36 H 1.07996 * 125.57009 * 179.78466 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0182 -0.6906 1.1962 5 6 2.8116 -1.9149 1.0627 6 6 4.2761 -1.5622 1.0180 7 1 4.5850 -0.5294 1.0829 8 6 5.2215 -2.5580 0.8941 9 7 4.8453 -3.8157 0.8145 10 14 7.0369 -2.1209 0.8394 11 1 7.1949 -0.6482 0.9471 12 1 7.7385 -2.7776 1.9715 13 1 7.6204 -2.5893 -0.4432 14 6 1.7377 -0.1995 2.4196 15 8 0.9902 0.7538 2.5358 16 6 2.3332 -0.8141 3.6108 17 6 2.0325 -0.5098 4.9215 18 6 2.8274 -1.3316 5.7267 19 7 2.8392 -1.3529 7.2067 20 8 3.5836 -2.1135 7.7989 21 8 2.1044 -0.6099 7.8322 22 6 3.5892 -2.1001 4.9121 23 7 3.2984 -1.7954 3.6238 24 1 3.7034 -2.2010 2.8413 25 1 -0.3634 0.4693 0.9143 26 1 -0.3634 0.5571 -0.8635 27 1 -0.3633 -1.0264 -0.0507 28 1 1.8932 -0.5139 -0.8900 29 1 3.1270 1.4435 -0.0802 30 1 1.6126 1.9790 -0.8471 31 1 1.7436 1.9327 0.9273 32 1 2.6207 -2.5665 1.9154 33 1 2.5336 -2.4294 0.1428 34 1 5.5106 -4.5164 0.7277 35 1 1.3168 0.2237 5.2621 36 1 4.3102 -2.8360 5.2361 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000608814112.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:36 Heat of formation + Delta-G solvation = 10.404939 kcal Electronic energy + Delta-G solvation = -22658.337369 eV Core-core repulsion = 19147.173824 eV Total energy + Delta-G solvation = -3511.163545 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.02210 -41.04723 -39.14450 -36.08572 -35.89461 -33.93023 -32.23796 -31.18256 -29.46653 -27.59482 -26.83029 -25.88745 -23.81801 -22.79565 -21.32325 -20.53463 -19.79137 -18.19667 -17.56266 -17.16354 -17.06270 -16.54960 -15.95832 -15.36653 -14.98441 -14.69766 -13.88110 -13.78422 -13.46758 -13.21334 -12.97031 -12.68306 -12.64675 -12.15211 -11.77287 -11.59327 -11.33249 -11.26544 -11.19199 -10.93038 -10.84860 -10.75930 -10.71955 -10.51202 -10.19473 -9.42464 -9.36160 -9.10855 -8.52207 -8.09462 -6.76783 -4.93651 0.70289 1.62113 1.85116 2.62116 2.88652 3.01021 3.04144 3.26332 3.61042 3.66318 3.89148 4.53224 4.79065 4.96675 5.07594 5.32921 5.47686 5.51099 5.63707 5.76122 5.92529 5.94173 6.15117 6.19131 6.23506 6.24798 6.47445 6.54400 6.64058 6.69826 6.88764 7.14134 7.21958 7.36214 7.56542 7.86729 8.13803 8.25113 8.56797 8.80066 10.24810 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.012123 B = 0.007683 C = 0.005140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2309.054749 B = 3643.581978 C = 5445.788477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.150 3.850 3 C -0.167 4.167 4 N -0.588 5.588 5 C 0.215 3.785 6 C -0.568 4.568 7 H 0.075 0.925 8 C 0.066 3.934 9 N -0.876 5.876 10 Si 0.899 3.101 11 H -0.267 1.267 12 H -0.276 1.276 13 H -0.275 1.275 14 C 0.590 3.410 15 O -0.543 6.543 16 C -0.016 4.016 17 C -0.076 4.076 18 C -0.144 4.144 19 N 0.072 4.928 20 O -0.188 6.188 21 O -0.178 6.178 22 C 0.103 3.897 23 N -0.483 5.483 24 H 0.462 0.538 25 H 0.078 0.922 26 H 0.058 0.942 27 H 0.050 0.950 28 H 0.088 0.912 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.074 0.926 32 H 0.034 0.966 33 H 0.053 0.947 34 H 0.276 0.724 35 H 0.167 0.833 36 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.614 2.141 -0.215 3.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.047 3.953 3 C -0.225 4.225 4 N -0.319 5.319 5 C 0.094 3.906 6 C -0.607 4.607 7 H 0.093 0.907 8 C -0.141 4.141 9 N -0.511 5.511 10 Si 0.725 3.275 11 H -0.191 1.191 12 H -0.201 1.201 13 H -0.200 1.200 14 C 0.378 3.622 15 O -0.423 6.423 16 C -0.131 4.131 17 C -0.102 4.102 18 C -0.236 4.236 19 N 0.586 4.414 20 O -0.398 6.398 21 O -0.391 6.391 22 C -0.046 4.046 23 N -0.095 5.095 24 H 0.326 0.674 25 H 0.096 0.904 26 H 0.077 0.923 27 H 0.069 0.931 28 H 0.106 0.894 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.093 0.907 32 H 0.052 0.948 33 H 0.071 0.929 34 H 0.086 0.914 35 H 0.184 0.816 36 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -2.873 2.357 -1.179 3.899 hybrid contribution 1.401 -0.305 -0.079 1.436 sum -1.473 2.053 -1.258 2.822 Atomic orbital electron populations 1.22245 0.95530 1.01709 1.03245 1.20912 0.93702 0.93310 0.87347 1.22168 1.01280 0.96079 1.02988 1.48160 1.51858 1.27407 1.04438 1.19845 0.90312 0.81308 0.99164 1.21745 0.90394 0.94920 1.53637 0.90731 1.25157 1.00550 0.94760 0.93644 1.69926 1.35619 0.99532 1.46049 0.86365 0.83021 0.79452 0.78676 1.19092 1.20094 1.19985 1.16804 0.80727 0.82892 0.81798 1.90722 1.37297 1.28161 1.86102 1.20593 0.99076 0.98400 0.95011 1.20917 1.00320 0.99882 0.89044 1.20140 1.12351 1.11632 0.79516 1.42625 0.98158 0.98221 1.02443 1.94496 1.37848 1.36897 1.70567 1.94502 1.38571 1.38417 1.67595 1.21887 0.99416 0.99618 0.83689 1.44741 1.28065 1.27485 1.09179 0.67411 0.90352 0.92295 0.93062 0.89422 0.92478 0.92381 0.90668 0.94822 0.92937 0.91354 0.81571 0.79084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.49 9.19 37.16 0.34 -2.15 16 2 C 0.15 2.47 3.27 -67.94 -0.22 2.24 16 3 C -0.17 -2.62 9.15 37.15 0.34 -2.28 16 4 N -0.59 -11.01 2.41 -169.01 -0.41 -11.41 16 5 C 0.21 4.35 4.64 -5.19 -0.02 4.32 16 6 C -0.57 -12.33 7.34 -34.44 -0.25 -12.58 16 7 H 0.07 1.70 7.81 -52.49 -0.41 1.29 16 8 C 0.07 1.45 5.08 -17.82 -0.09 1.36 16 9 N -0.88 -20.02 13.29 55.43 0.74 -19.29 16 10 Si 0.90 17.72 29.54 -169.99 -5.02 12.70 16 11 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 12 H -0.28 -5.39 7.11 56.52 0.40 -4.99 16 13 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 14 C 0.59 11.45 7.01 -12.85 -0.09 11.36 16 15 O -0.54 -10.99 13.09 5.19 0.07 -10.92 16 16 C -0.02 -0.30 6.62 -81.98 -0.54 -0.84 16 17 C -0.08 -1.35 10.39 -39.11 -0.41 -1.76 16 18 C -0.14 -2.51 7.11 -80.34 -0.57 -3.09 16 19 N 0.07 1.30 4.45 33.77 0.15 1.45 16 20 O -0.19 -3.40 19.02 -29.46 -0.56 -3.96 16 21 O -0.18 -3.32 19.05 -29.46 -0.56 -3.88 16 22 C 0.10 1.68 11.57 -16.91 -0.20 1.48 16 23 N -0.48 -8.74 4.83 -9.39 -0.05 -8.78 16 24 H 0.46 8.93 3.30 -40.82 -0.13 8.80 16 25 H 0.08 1.29 6.09 -51.93 -0.32 0.98 16 26 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.09 1.39 7.79 -51.93 -0.40 0.99 16 29 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.07 1.30 6.06 -51.93 -0.31 0.99 16 32 H 0.03 0.70 5.23 -51.93 -0.27 0.43 16 33 H 0.05 1.11 7.91 -51.93 -0.41 0.70 16 34 H 0.28 6.03 8.31 -40.82 -0.34 5.69 16 35 H 0.17 2.76 8.06 -52.49 -0.42 2.34 16 36 H 0.19 2.54 8.06 -52.49 -0.42 2.12 16 LS Contribution 309.56 15.07 4.66 4.66 Total: -1.00 -23.98 309.56 -6.62 -30.60 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: -3.93 Total: 10.75 kcal Atomic # 6 Polarization: -0.21 SS G_CDS: -1.71 Total: -1.93 kcal Atomic # 7 Polarization: -38.47 SS G_CDS: 0.43 Total: -38.03 kcal Atomic # 8 Polarization: -17.71 SS G_CDS: -1.05 Total: -18.76 kcal Atomic # 14 Polarization: 17.72 SS G_CDS: -5.02 Total: 12.70 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -23.98 -6.62 -30.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000608814112.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.007 kcal (2) G-P(sol) polarization free energy of solvation -23.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.602 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds