Wall clock time and date at job start Tue Mar 31 2020 05:34:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47104 * 2 1 4 4 N 1.46495 * 109.46923 * 119.99919 * 2 1 3 5 5 C 1.46502 * 120.00423 * 117.33253 * 4 2 1 6 6 C 1.50702 * 109.47345 * 91.58757 * 5 4 2 7 7 H 1.07997 * 119.99686 * 0.02562 * 6 5 4 8 8 C 1.37869 * 119.99757 * 180.02562 * 6 5 4 9 9 N 1.31511 * 120.00311 * 0.02562 * 8 6 5 10 10 Si 1.86811 * 119.99862 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.46898 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.46693 * 120.00221 * 10 8 6 13 13 H 1.48490 * 109.47111 * 240.00362 * 10 8 6 14 14 C 1.34783 * 120.00293 * 297.32742 * 4 2 1 15 15 O 1.21698 * 119.99485 * 5.94015 * 14 4 2 16 16 C 1.46670 * 120.00150 * 185.94096 * 14 4 2 17 17 C 1.37879 * 126.22955 * 187.11674 * 16 14 4 18 18 C 1.39840 * 107.08165 * 179.88130 * 17 16 14 19 19 N 1.48014 * 126.06758 * 180.10622 * 18 17 16 20 20 O 1.21799 * 120.00254 * 180.30153 * 19 18 17 21 21 O 1.21793 * 119.99746 * 0.30336 * 19 18 17 22 22 C 1.35450 * 107.86706 * 0.38680 * 18 17 16 23 23 N 1.35537 * 108.87148 * 359.75774 * 22 18 17 24 24 H 0.96992 * 125.68052 * 179.97438 * 23 22 18 25 25 H 1.09004 * 109.47266 * 297.17254 * 1 2 3 26 26 H 1.09002 * 109.47593 * 57.17070 * 1 2 3 27 27 H 1.09004 * 109.47116 * 177.17189 * 1 2 3 28 28 H 1.08998 * 109.46789 * 239.99749 * 2 1 3 29 29 H 1.09001 * 109.47338 * 184.47632 * 3 2 1 30 30 H 1.09004 * 109.47406 * 304.48037 * 3 2 1 31 31 H 1.08998 * 109.47581 * 64.47599 * 3 2 1 32 32 H 1.09000 * 109.47484 * 211.59433 * 5 4 2 33 33 H 1.09004 * 109.46455 * 331.59126 * 5 4 2 34 34 H 0.97007 * 120.00152 * 180.02562 * 9 8 6 35 35 H 1.07993 * 126.46112 * 359.97438 * 17 16 14 36 36 H 1.07996 * 125.57009 * 179.78466 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0182 -0.6906 1.1962 5 6 2.8116 -1.9149 1.0627 6 6 4.2761 -1.5622 1.0180 7 1 4.5850 -0.5294 1.0829 8 6 5.2215 -2.5580 0.8941 9 7 4.8453 -3.8157 0.8145 10 14 7.0369 -2.1209 0.8394 11 1 7.1949 -0.6482 0.9471 12 1 7.7385 -2.7776 1.9715 13 1 7.6204 -2.5893 -0.4432 14 6 1.7377 -0.1995 2.4196 15 8 0.9902 0.7538 2.5358 16 6 2.3332 -0.8141 3.6108 17 6 2.0325 -0.5098 4.9215 18 6 2.8274 -1.3316 5.7267 19 7 2.8392 -1.3529 7.2067 20 8 3.5836 -2.1135 7.7989 21 8 2.1044 -0.6099 7.8322 22 6 3.5892 -2.1001 4.9121 23 7 3.2984 -1.7954 3.6238 24 1 3.7034 -2.2010 2.8413 25 1 -0.3634 0.4693 0.9143 26 1 -0.3634 0.5571 -0.8635 27 1 -0.3633 -1.0264 -0.0507 28 1 1.8932 -0.5139 -0.8900 29 1 3.1270 1.4435 -0.0802 30 1 1.6126 1.9790 -0.8471 31 1 1.7436 1.9327 0.9273 32 1 2.6207 -2.5665 1.9154 33 1 2.5336 -2.4294 0.1428 34 1 5.5106 -4.5164 0.7277 35 1 1.3168 0.2237 5.2621 36 1 4.3102 -2.8360 5.2361 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000608814112.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:35 Heat of formation + Delta-G solvation = -0.125330 kcal Electronic energy + Delta-G solvation = -22658.793995 eV Core-core repulsion = 19147.173824 eV Total energy + Delta-G solvation = -3511.620171 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.44386 -42.48247 -40.59837 -37.52801 -37.40705 -35.46578 -33.74118 -32.59671 -30.89885 -29.20302 -28.05718 -27.31204 -25.39247 -24.26533 -22.72659 -21.92660 -21.19565 -19.62983 -19.07269 -18.76499 -18.52834 -18.01838 -17.39554 -16.79073 -16.54611 -16.21368 -15.25848 -15.18187 -14.89653 -14.59592 -14.49752 -14.08240 -13.99367 -13.57757 -13.33367 -12.89080 -12.80934 -12.78306 -12.63850 -12.32578 -12.28736 -12.21040 -12.20875 -11.93200 -11.79652 -10.94545 -10.81417 -10.70606 -9.96295 -9.57704 -8.45210 -6.66741 -0.72127 0.18857 0.43272 1.22597 1.32554 1.41636 1.48361 1.84415 2.13509 2.18277 2.31095 2.83624 3.37324 3.57505 3.75695 4.00537 4.15484 4.21979 4.32666 4.41711 4.50236 4.76404 4.79198 4.83340 4.90754 4.94710 5.00127 5.12452 5.32962 5.38416 5.46711 5.47795 5.69259 5.75230 6.10021 6.31299 6.57576 6.69161 7.03428 7.13004 8.55979 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.012123 B = 0.007683 C = 0.005140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2309.054749 B = 3643.581978 C = 5445.788477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.139 3.861 3 C -0.159 4.159 4 N -0.589 5.589 5 C 0.225 3.775 6 C -0.568 4.568 7 H 0.061 0.939 8 C 0.040 3.960 9 N -0.896 5.896 10 Si 0.946 3.054 11 H -0.275 1.275 12 H -0.269 1.269 13 H -0.276 1.276 14 C 0.585 3.415 15 O -0.556 6.556 16 C -0.036 4.036 17 C -0.071 4.071 18 C -0.153 4.153 19 N 0.073 4.927 20 O -0.178 6.178 21 O -0.197 6.197 22 C 0.121 3.879 23 N -0.491 5.491 24 H 0.459 0.541 25 H 0.059 0.941 26 H 0.086 0.914 27 H 0.051 0.949 28 H 0.093 0.907 29 H 0.044 0.956 30 H 0.087 0.913 31 H 0.056 0.944 32 H 0.032 0.968 33 H 0.041 0.959 34 H 0.279 0.721 35 H 0.173 0.827 36 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.156 1.977 -0.443 2.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.037 3.963 3 C -0.217 4.217 4 N -0.319 5.319 5 C 0.103 3.897 6 C -0.607 4.607 7 H 0.079 0.921 8 C -0.165 4.165 9 N -0.532 5.532 10 Si 0.771 3.229 11 H -0.199 1.199 12 H -0.194 1.194 13 H -0.202 1.202 14 C 0.373 3.627 15 O -0.437 6.437 16 C -0.150 4.150 17 C -0.097 4.097 18 C -0.246 4.246 19 N 0.585 4.415 20 O -0.392 6.392 21 O -0.405 6.405 22 C -0.028 4.028 23 N -0.101 5.101 24 H 0.321 0.679 25 H 0.078 0.922 26 H 0.105 0.895 27 H 0.070 0.930 28 H 0.111 0.889 29 H 0.063 0.937 30 H 0.106 0.894 31 H 0.075 0.925 32 H 0.049 0.951 33 H 0.060 0.940 34 H 0.089 0.911 35 H 0.190 0.810 36 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -2.457 2.232 -1.402 3.603 hybrid contribution 1.267 -0.273 -0.006 1.297 sum -1.190 1.958 -1.408 2.690 Atomic orbital electron populations 1.22153 0.94039 1.02031 1.03523 1.21188 0.94942 0.93533 0.86640 1.22093 1.00570 0.95741 1.03274 1.48208 1.51543 1.27049 1.05085 1.19630 0.89873 0.81785 0.98390 1.21716 0.91169 0.94185 1.53587 0.92078 1.25584 1.02875 0.94639 0.93394 1.69969 1.36498 1.00044 1.46718 0.85661 0.80087 0.78579 0.78603 1.19918 1.19436 1.20164 1.16945 0.80685 0.82843 0.82185 1.90710 1.37946 1.28713 1.86343 1.20588 0.99989 0.99302 0.95093 1.21038 1.00107 0.99699 0.88815 1.20165 1.12956 1.12216 0.79231 1.42667 0.98060 0.98123 1.02618 1.94482 1.37455 1.36512 1.70702 1.94510 1.39185 1.39016 1.67795 1.22396 0.98721 0.99000 0.82662 1.44666 1.28216 1.27607 1.09657 0.67893 0.92229 0.89476 0.92989 0.88887 0.93674 0.89415 0.92514 0.95095 0.94047 0.91086 0.80952 0.75932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.48 9.19 71.98 0.66 -3.81 16 2 C 0.14 4.44 3.27 44.99 0.15 4.59 16 3 C -0.16 -4.82 9.15 71.98 0.66 -4.16 16 4 N -0.59 -21.89 2.41 -806.83 -1.94 -23.84 16 5 C 0.22 9.05 4.64 85.63 0.40 9.45 16 6 C -0.57 -24.37 7.34 25.60 0.19 -24.18 16 7 H 0.06 2.77 7.81 -2.91 -0.02 2.75 16 8 C 0.04 1.74 5.08 84.65 0.43 2.17 16 9 N -0.90 -40.11 13.29 21.44 0.28 -39.83 16 10 Si 0.95 35.41 29.54 68.60 2.03 37.44 16 11 H -0.27 -10.55 7.11 99.48 0.71 -9.85 16 12 H -0.27 -9.78 7.11 99.48 0.71 -9.07 16 13 H -0.28 -10.38 7.11 99.48 0.71 -9.68 16 14 C 0.58 22.66 7.01 86.44 0.61 23.26 16 15 O -0.56 -22.54 13.09 -4.34 -0.06 -22.59 16 16 C -0.04 -1.32 6.62 40.35 0.27 -1.05 16 17 C -0.07 -2.47 10.39 22.57 0.23 -2.24 16 18 C -0.15 -5.13 7.11 36.12 0.26 -4.87 16 19 N 0.07 2.53 4.45 -47.08 -0.21 2.32 16 20 O -0.18 -6.08 19.02 18.89 0.36 -5.72 16 21 O -0.20 -7.16 19.05 18.89 0.36 -6.80 16 22 C 0.12 3.72 11.57 83.48 0.97 4.68 16 23 N -0.49 -17.27 4.83 -183.62 -0.89 -18.16 16 24 H 0.46 17.35 3.30 -92.71 -0.31 17.05 16 25 H 0.06 1.92 6.09 -2.38 -0.01 1.90 16 26 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 27 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.09 2.85 7.79 -2.39 -0.02 2.84 16 29 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.09 2.10 8.14 -2.38 -0.02 2.08 16 31 H 0.06 1.94 6.06 -2.39 -0.01 1.92 16 32 H 0.03 1.29 5.23 -2.39 -0.01 1.28 16 33 H 0.04 1.75 7.91 -2.38 -0.02 1.73 16 34 H 0.28 11.88 8.31 -92.70 -0.77 11.11 16 35 H 0.17 5.66 8.06 -2.91 -0.02 5.63 16 36 H 0.22 5.24 8.06 -2.91 -0.02 5.22 16 Total: -1.00 -49.26 309.56 5.56 -43.69 By element: Atomic # 1 Polarization: 28.83 SS G_CDS: 0.82 Total: 29.65 kcal Atomic # 6 Polarization: -0.98 SS G_CDS: 4.81 Total: 3.83 kcal Atomic # 7 Polarization: -76.74 SS G_CDS: -2.75 Total: -79.50 kcal Atomic # 8 Polarization: -35.78 SS G_CDS: 0.66 Total: -35.11 kcal Atomic # 14 Polarization: 35.41 SS G_CDS: 2.03 Total: 37.44 kcal Total: -49.26 5.56 -43.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000608814112.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.569 kcal (2) G-P(sol) polarization free energy of solvation -49.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds