Wall clock time and date at job start Tue Mar 31 2020 06:29:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34723 * 117.00107 * 2 1 4 4 O 1.21492 * 119.99638 * 0.02562 * 3 2 1 5 5 C 1.47599 * 120.00610 * 180.02562 * 3 2 1 6 6 C 1.39724 * 120.11918 * 0.02562 * 5 3 2 7 7 C 1.37793 * 119.87332 * 179.97438 * 6 5 3 8 8 C 1.38690 * 120.12641 * 0.02562 * 7 6 5 9 9 F 1.35104 * 119.87753 * 179.97438 * 8 7 6 10 10 C 1.38651 * 120.24684 * 0.02562 * 8 7 6 11 11 C 1.50696 * 119.93650 * 179.97438 * 10 8 7 12 12 N 1.46899 * 109.47268 * 284.99416 * 11 10 8 13 13 C 1.46896 * 111.00228 * 180.02562 * 12 11 10 14 14 H 1.09000 * 109.47078 * 35.00260 * 13 12 11 15 15 C 1.53000 * 109.47265 * 275.00291 * 13 12 11 16 16 C 1.50703 * 109.47173 * 155.00072 * 13 12 11 17 17 H 1.08006 * 119.99817 * 35.00135 * 16 13 12 18 18 C 1.37879 * 120.00142 * 215.00605 * 16 13 12 19 19 N 1.31514 * 120.00065 * 184.91318 * 18 16 13 20 20 Si 1.86799 * 120.00086 * 4.90769 * 18 16 13 21 21 H 1.48496 * 109.46932 * 84.83083 * 20 18 16 22 22 H 1.48491 * 109.47212 * 204.83377 * 20 18 16 23 23 H 1.48507 * 109.46996 * 324.83552 * 20 18 16 24 24 C 1.37834 * 120.12313 * 0.24336 * 10 8 7 25 25 H 1.08994 * 109.47261 * 60.00390 * 1 2 3 26 26 H 1.09000 * 109.46740 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47164 * 299.99916 * 1 2 3 28 28 H 1.08007 * 120.06422 * 359.94848 * 6 5 3 29 29 H 1.08004 * 119.93878 * 179.97438 * 7 6 5 30 30 H 1.09005 * 109.47010 * 164.99728 * 11 10 8 31 31 H 1.09005 * 109.47460 * 44.99793 * 11 10 8 32 32 H 1.00900 * 111.00401 * 303.95887 * 12 11 10 33 33 H 1.09002 * 109.46849 * 295.04687 * 15 13 12 34 34 H 1.09000 * 109.46917 * 175.05645 * 15 13 12 35 35 H 1.08992 * 109.47253 * 55.05310 * 15 13 12 36 36 H 0.96999 * 120.00472 * 179.97438 * 19 18 16 37 37 H 1.07999 * 120.06251 * 179.70909 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2004 0.0000 4 8 1.4019 2.2193 0.0005 5 6 3.5376 1.2778 -0.0006 6 6 4.3011 0.1076 -0.0017 7 6 5.6769 0.1857 -0.0027 8 6 6.3038 1.4228 -0.0022 9 9 7.6530 1.4936 -0.0027 10 6 5.5511 2.5873 0.0000 11 6 6.2396 3.9278 0.0011 12 7 6.7832 4.1979 1.3388 13 6 7.4627 5.4997 1.3780 14 1 6.9400 6.2020 0.7285 15 6 8.9057 5.3366 0.8963 16 6 7.4609 6.0250 2.7905 17 1 7.5515 5.3408 3.6212 18 6 7.3436 7.3791 3.0223 19 7 7.4389 7.8472 4.2476 20 14 7.0494 8.5489 1.5960 21 1 5.5954 8.6141 1.3012 22 1 7.5427 9.9024 1.9560 23 1 7.7761 8.0598 0.3967 24 6 4.1744 2.5210 0.0066 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 3.8140 -0.8564 -0.0012 29 1 6.2681 -0.7181 -0.0031 30 1 5.5224 4.7048 -0.2633 31 1 7.0515 3.9199 -0.7262 32 1 6.0598 4.1467 2.0403 33 1 9.4527 4.7039 1.5953 34 1 9.3832 6.3149 0.8417 35 1 8.9092 4.8749 -0.0910 36 1 7.3567 8.7998 4.4108 37 1 3.5891 3.4287 0.0131 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611727872.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:37 Heat of formation + Delta-G solvation = -106.792074 kcal Electronic energy + Delta-G solvation = -21404.435951 eV Core-core repulsion = 17868.270401 eV Total energy + Delta-G solvation = -3536.165550 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 4.80 seconds Orbital eigenvalues (eV) -48.81278 -40.71738 -38.93318 -36.60616 -36.13545 -33.05341 -31.60338 -31.16773 -28.95817 -27.86096 -25.52863 -24.54159 -24.04696 -22.14449 -20.73236 -19.71908 -17.99251 -17.68033 -17.16294 -16.89269 -16.56454 -16.25015 -15.56310 -15.16301 -14.58202 -14.09654 -13.94975 -13.85456 -13.62686 -13.41369 -13.20011 -12.95735 -12.50437 -12.39173 -12.31681 -12.08866 -11.69861 -11.23160 -11.05085 -11.03227 -10.79786 -10.67241 -10.62643 -10.35119 -9.81518 -9.21749 -9.04324 -8.78420 -8.61224 -7.51351 -6.13603 -4.14623 0.44556 1.06533 2.30144 2.43895 3.23657 3.32884 3.34164 3.47595 4.15308 4.35818 4.44745 4.56143 4.65715 4.83760 4.92427 4.96890 5.03400 5.15378 5.23494 5.37849 5.59133 5.66110 5.79286 5.91329 6.00420 6.01564 6.09749 6.25467 6.40747 6.64493 6.66570 6.80895 6.86359 7.39303 7.53053 7.59889 7.87922 8.32329 8.60888 8.95742 9.49936 10.99331 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.019119 B = 0.004248 C = 0.003695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.163830 B = 6589.293650 C = 7576.772479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.357 6.357 3 C 0.512 3.488 4 O -0.504 6.504 5 C -0.147 4.147 6 C -0.037 4.037 7 C -0.174 4.174 8 C 0.165 3.835 9 F -0.118 7.118 10 C -0.120 4.120 11 C 0.093 3.907 12 N -0.677 5.677 13 C 0.181 3.819 14 H 0.005 0.995 15 C -0.125 4.125 16 C -0.519 4.519 17 H 0.080 0.920 18 C 0.074 3.926 19 N -0.895 5.895 20 Si 0.875 3.125 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.265 1.265 24 C -0.020 4.020 25 H 0.063 0.937 26 H 0.102 0.898 27 H 0.064 0.936 28 H 0.145 0.855 29 H 0.143 0.857 30 H 0.038 0.962 31 H 0.079 0.921 32 H 0.342 0.658 33 H 0.052 0.948 34 H 0.041 0.959 35 H 0.021 0.979 36 H 0.265 0.735 37 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.804 -17.188 -11.410 22.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.273 6.273 3 C 0.358 3.642 4 O -0.393 6.393 5 C -0.149 4.149 6 C -0.056 4.056 7 C -0.193 4.193 8 C 0.145 3.855 9 F -0.096 7.096 10 C -0.121 4.121 11 C -0.036 4.036 12 N -0.310 5.310 13 C 0.073 3.927 14 H 0.023 0.977 15 C -0.183 4.183 16 C -0.557 4.557 17 H 0.098 0.902 18 C -0.129 4.129 19 N -0.532 5.532 20 Si 0.702 3.298 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.190 1.190 24 C -0.039 4.039 25 H 0.082 0.918 26 H 0.120 0.880 27 H 0.083 0.917 28 H 0.162 0.838 29 H 0.161 0.839 30 H 0.056 0.944 31 H 0.098 0.902 32 H 0.161 0.839 33 H 0.071 0.929 34 H 0.060 0.940 35 H 0.040 0.960 36 H 0.075 0.925 37 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -9.391 -17.049 -11.397 22.555 hybrid contribution -0.896 1.405 -0.628 1.781 sum -10.288 -15.644 -12.025 22.253 Atomic orbital electron populations 1.23281 0.75921 1.03717 1.02762 1.86528 1.23602 1.32687 1.84512 1.21111 0.89006 0.81440 0.72692 1.90863 1.66730 1.35976 1.45719 1.18997 0.89034 0.94824 1.12002 1.21207 0.92668 0.98113 0.93595 1.21119 0.95187 0.96853 1.06153 1.17857 0.77532 0.93591 0.96505 1.91571 1.28358 1.97126 1.92556 1.20062 0.93057 0.95865 1.03163 1.20900 0.97283 0.90098 0.95336 1.60802 1.32339 1.35753 1.02066 1.19586 0.91202 0.84969 0.96961 0.97723 1.21834 0.98886 0.99685 0.97909 1.21058 1.50780 0.92906 0.91004 0.90185 1.25028 0.94361 0.98085 0.95407 1.69896 1.49552 1.14013 1.19755 0.86897 0.78924 0.80469 0.83486 1.20280 1.21339 1.18955 1.21096 0.93054 0.97197 0.92520 0.91823 0.87974 0.91699 0.83757 0.83897 0.94424 0.90236 0.83914 0.92891 0.94021 0.96045 0.92514 0.83685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.27 10.56 101.05 1.07 1.34 16 2 O -0.36 -3.66 9.81 -40.56 -0.40 -4.06 16 3 C 0.51 6.49 7.89 34.55 0.27 6.77 16 4 O -0.50 -7.73 16.13 -19.26 -0.31 -8.04 16 5 C -0.15 -1.80 5.87 -104.98 -0.62 -2.42 16 6 C -0.04 -0.38 9.61 -39.19 -0.38 -0.75 16 7 C -0.17 -1.86 10.01 -39.58 -0.40 -2.26 16 8 C 0.17 2.27 7.25 -39.26 -0.28 1.99 16 9 F -0.12 -1.83 16.74 2.25 0.04 -1.79 16 10 C -0.12 -1.75 5.39 -104.62 -0.56 -2.32 16 11 C 0.09 1.58 5.29 -4.98 -0.03 1.55 16 12 N -0.68 -13.86 6.29 -109.22 -0.69 -14.55 16 13 C 0.18 4.24 2.26 -68.87 -0.16 4.08 16 14 H 0.01 0.12 4.95 -51.93 -0.26 -0.14 16 15 C -0.12 -2.75 9.42 37.16 0.35 -2.40 16 16 C -0.52 -14.39 8.84 -34.44 -0.30 -14.70 16 17 H 0.08 2.44 8.06 -52.48 -0.42 2.01 16 18 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 19 N -0.89 -27.06 13.96 55.43 0.77 -26.29 16 20 Si 0.87 21.37 26.99 -169.99 -4.59 16.78 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 23 H -0.26 -6.22 6.82 56.52 0.39 -5.83 16 24 C -0.02 -0.27 9.21 -39.19 -0.36 -0.63 16 25 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.14 1.09 7.61 -52.48 -0.40 0.69 16 29 H 0.14 1.17 8.06 -52.48 -0.42 0.74 16 30 H 0.04 0.62 7.86 -51.93 -0.41 0.22 16 31 H 0.08 1.33 7.30 -51.93 -0.38 0.95 16 32 H 0.34 7.15 8.34 -39.29 -0.33 6.82 16 33 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.04 0.92 8.14 -51.93 -0.42 0.49 16 35 H 0.02 0.41 7.35 -51.93 -0.38 0.03 16 36 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 37 H 0.15 1.99 7.59 -52.49 -0.40 1.59 16 LS Contribution 324.16 15.07 4.89 4.89 Total: -1.00 -31.58 324.16 -6.44 -38.02 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: -4.66 Total: 2.78 kcal Atomic # 6 Polarization: -6.24 SS G_CDS: -1.49 Total: -7.74 kcal Atomic # 7 Polarization: -40.92 SS G_CDS: 0.09 Total: -40.84 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: -0.71 Total: -12.10 kcal Atomic # 9 Polarization: -1.83 SS G_CDS: 0.04 Total: -1.79 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -4.59 Total: 16.78 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -31.58 -6.44 -38.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611727872.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.774 kcal (2) G-P(sol) polarization free energy of solvation -31.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.80 seconds