Wall clock time and date at job start Tue Mar 31 2020 06:29:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34723 * 117.00107 * 2 1 4 4 O 1.21492 * 119.99638 * 0.02562 * 3 2 1 5 5 C 1.47599 * 120.00610 * 180.02562 * 3 2 1 6 6 C 1.39724 * 120.11918 * 0.02562 * 5 3 2 7 7 C 1.37793 * 119.87332 * 179.97438 * 6 5 3 8 8 C 1.38690 * 120.12641 * 0.02562 * 7 6 5 9 9 F 1.35104 * 119.87753 * 179.97438 * 8 7 6 10 10 C 1.38651 * 120.24684 * 0.02562 * 8 7 6 11 11 C 1.50696 * 119.93650 * 179.97438 * 10 8 7 12 12 N 1.46899 * 109.47268 * 284.99416 * 11 10 8 13 13 C 1.46896 * 111.00228 * 180.02562 * 12 11 10 14 14 H 1.09000 * 109.47078 * 35.00260 * 13 12 11 15 15 C 1.53000 * 109.47265 * 275.00291 * 13 12 11 16 16 C 1.50703 * 109.47173 * 155.00072 * 13 12 11 17 17 H 1.08006 * 119.99817 * 35.00135 * 16 13 12 18 18 C 1.37879 * 120.00142 * 215.00605 * 16 13 12 19 19 N 1.31514 * 120.00065 * 184.91318 * 18 16 13 20 20 Si 1.86799 * 120.00086 * 4.90769 * 18 16 13 21 21 H 1.48496 * 109.46932 * 84.83083 * 20 18 16 22 22 H 1.48491 * 109.47212 * 204.83377 * 20 18 16 23 23 H 1.48507 * 109.46996 * 324.83552 * 20 18 16 24 24 C 1.37834 * 120.12313 * 0.24336 * 10 8 7 25 25 H 1.08994 * 109.47261 * 60.00390 * 1 2 3 26 26 H 1.09000 * 109.46740 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47164 * 299.99916 * 1 2 3 28 28 H 1.08007 * 120.06422 * 359.94848 * 6 5 3 29 29 H 1.08004 * 119.93878 * 179.97438 * 7 6 5 30 30 H 1.09005 * 109.47010 * 164.99728 * 11 10 8 31 31 H 1.09005 * 109.47460 * 44.99793 * 11 10 8 32 32 H 1.00900 * 111.00401 * 303.95887 * 12 11 10 33 33 H 1.09002 * 109.46849 * 295.04687 * 15 13 12 34 34 H 1.09000 * 109.46917 * 175.05645 * 15 13 12 35 35 H 1.08992 * 109.47253 * 55.05310 * 15 13 12 36 36 H 0.96999 * 120.00472 * 179.97438 * 19 18 16 37 37 H 1.07999 * 120.06251 * 179.70909 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2004 0.0000 4 8 1.4019 2.2193 0.0005 5 6 3.5376 1.2778 -0.0006 6 6 4.3011 0.1076 -0.0017 7 6 5.6769 0.1857 -0.0027 8 6 6.3038 1.4228 -0.0022 9 9 7.6530 1.4936 -0.0027 10 6 5.5511 2.5873 0.0000 11 6 6.2396 3.9278 0.0011 12 7 6.7832 4.1979 1.3388 13 6 7.4627 5.4997 1.3780 14 1 6.9400 6.2020 0.7285 15 6 8.9057 5.3366 0.8963 16 6 7.4609 6.0250 2.7905 17 1 7.5515 5.3408 3.6212 18 6 7.3436 7.3791 3.0223 19 7 7.4389 7.8472 4.2476 20 14 7.0494 8.5489 1.5960 21 1 5.5954 8.6141 1.3012 22 1 7.5427 9.9024 1.9560 23 1 7.7761 8.0598 0.3967 24 6 4.1744 2.5210 0.0066 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 3.8140 -0.8564 -0.0012 29 1 6.2681 -0.7181 -0.0031 30 1 5.5224 4.7048 -0.2633 31 1 7.0515 3.9199 -0.7262 32 1 6.0598 4.1467 2.0403 33 1 9.4527 4.7039 1.5953 34 1 9.3832 6.3149 0.8417 35 1 8.9092 4.8749 -0.0910 36 1 7.3567 8.7998 4.4108 37 1 3.5891 3.4287 0.0131 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611727872.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:36 Heat of formation + Delta-G solvation = -127.262822 kcal Electronic energy + Delta-G solvation = -21405.323629 eV Core-core repulsion = 17868.270401 eV Total energy + Delta-G solvation = -3537.053228 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.91575 -41.65612 -39.93725 -37.80578 -37.49982 -34.81078 -33.24908 -32.12075 -30.47177 -28.59201 -27.40597 -26.02275 -25.00891 -23.17896 -21.78777 -21.53814 -19.33422 -18.75344 -18.60519 -18.06299 -17.43539 -17.37352 -16.88897 -16.60611 -15.74416 -15.61564 -15.38510 -14.97202 -14.73011 -14.54995 -14.45655 -14.31088 -13.95961 -13.88010 -13.37499 -13.06948 -12.99087 -12.85989 -12.67737 -12.61144 -12.18472 -11.97303 -11.83276 -11.82762 -11.70891 -11.09273 -10.79080 -10.14714 -9.83551 -9.16755 -8.33326 -6.39251 -0.53780 0.10941 1.30930 1.32287 1.32915 1.43453 1.60877 2.29963 2.50384 3.00280 3.16833 3.44451 3.58426 3.68872 3.76836 4.02954 4.13478 4.32019 4.35212 4.41078 4.51537 4.59652 4.69903 4.78669 4.80716 4.87722 4.97135 5.01083 5.07838 5.10528 5.12610 5.27931 5.48586 5.67591 5.68390 5.98068 6.47118 6.60703 6.63222 6.77798 7.29851 8.83359 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.019119 B = 0.004248 C = 0.003695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.163830 B = 6589.293650 C = 7576.772479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.350 6.350 3 C 0.515 3.485 4 O -0.539 6.539 5 C -0.153 4.153 6 C -0.017 4.017 7 C -0.160 4.160 8 C 0.149 3.851 9 F -0.132 7.132 10 C -0.135 4.135 11 C 0.095 3.905 12 N -0.680 5.680 13 C 0.184 3.816 14 H 0.007 0.993 15 C -0.120 4.120 16 C -0.522 4.522 17 H 0.036 0.964 18 C 0.017 3.983 19 N -0.943 5.943 20 Si 0.940 3.060 21 H -0.269 1.269 22 H -0.284 1.284 23 H -0.245 1.245 24 C -0.027 4.027 25 H 0.063 0.937 26 H 0.139 0.861 27 H 0.059 0.941 28 H 0.180 0.820 29 H 0.176 0.824 30 H 0.040 0.960 31 H 0.083 0.917 32 H 0.336 0.664 33 H 0.041 0.959 34 H 0.038 0.962 35 H 0.048 0.952 36 H 0.267 0.733 37 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.615 -19.197 -13.546 25.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.266 6.266 3 C 0.362 3.638 4 O -0.430 6.430 5 C -0.155 4.155 6 C -0.035 4.035 7 C -0.178 4.178 8 C 0.129 3.871 9 F -0.110 7.110 10 C -0.136 4.136 11 C -0.034 4.034 12 N -0.312 5.312 13 C 0.075 3.925 14 H 0.025 0.975 15 C -0.178 4.178 16 C -0.561 4.561 17 H 0.055 0.945 18 C -0.181 4.181 19 N -0.583 5.583 20 Si 0.764 3.236 21 H -0.195 1.195 22 H -0.210 1.210 23 H -0.169 1.169 24 C -0.046 4.046 25 H 0.082 0.918 26 H 0.157 0.843 27 H 0.078 0.922 28 H 0.197 0.803 29 H 0.193 0.807 30 H 0.058 0.942 31 H 0.101 0.899 32 H 0.154 0.846 33 H 0.060 0.940 34 H 0.057 0.943 35 H 0.067 0.933 36 H 0.076 0.924 37 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -10.202 -19.102 -13.553 25.547 hybrid contribution -0.728 1.847 0.083 1.987 sum -10.930 -17.255 -13.470 24.467 Atomic orbital electron populations 1.23616 0.74149 1.06087 1.02569 1.86513 1.25267 1.31064 1.83787 1.21190 0.89116 0.81661 0.71850 1.90850 1.67456 1.37251 1.47481 1.19094 0.89221 0.95081 1.12068 1.21571 0.92278 0.98660 0.90959 1.21445 0.95551 0.96680 1.04126 1.18138 0.77002 0.94534 0.97444 1.91536 1.29374 1.97249 1.92856 1.19798 0.93357 0.95049 1.05401 1.20874 0.97564 0.91825 0.93090 1.60697 1.32679 1.33760 1.04020 1.19465 0.92609 0.86270 0.94153 0.97536 1.21737 0.97426 0.99612 0.99053 1.21261 1.50087 0.92524 0.92188 0.94544 1.25881 0.94166 0.99960 0.98105 1.70043 1.51439 1.14566 1.22250 0.85846 0.79296 0.77965 0.80491 1.19474 1.21036 1.16906 1.21011 0.92656 0.97784 0.93136 0.91850 0.84304 0.92177 0.80281 0.80668 0.94201 0.89923 0.84630 0.93990 0.94266 0.93303 0.92372 0.84665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.56 113.37 1.20 1.55 16 2 O -0.35 -6.25 9.81 -56.33 -0.55 -6.80 16 3 C 0.52 12.28 7.89 70.29 0.55 12.83 16 4 O -0.54 -16.33 16.13 19.86 0.32 -16.01 16 5 C -0.15 -3.47 5.87 -20.10 -0.12 -3.59 16 6 C -0.02 -0.28 9.61 22.52 0.22 -0.06 16 7 C -0.16 -2.87 10.01 22.27 0.22 -2.65 16 8 C 0.15 3.84 7.25 22.48 0.16 4.00 16 9 F -0.13 -3.91 16.74 44.97 0.75 -3.15 16 10 C -0.13 -3.83 5.39 -19.86 -0.11 -3.93 16 11 C 0.10 3.17 5.29 85.56 0.45 3.62 16 12 N -0.68 -27.98 6.29 -499.46 -3.14 -31.13 16 13 C 0.18 8.59 2.26 44.17 0.10 8.69 16 14 H 0.01 0.32 4.95 -2.39 -0.01 0.31 16 15 C -0.12 -5.17 9.42 71.98 0.68 -4.49 16 16 C -0.52 -29.79 8.84 25.60 0.23 -29.56 16 17 H 0.04 2.34 8.06 -2.91 -0.02 2.31 16 18 C 0.02 1.00 5.47 84.66 0.46 1.46 16 19 N -0.94 -58.78 13.96 21.45 0.30 -58.48 16 20 Si 0.94 44.03 26.99 68.60 1.85 45.88 16 21 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 22 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 23 H -0.25 -10.65 6.82 99.48 0.68 -9.98 16 24 C -0.03 -0.72 9.21 22.52 0.21 -0.51 16 25 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 26 H 0.14 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.18 1.76 7.61 -2.91 -0.02 1.74 16 29 H 0.18 2.04 8.06 -2.91 -0.02 2.01 16 30 H 0.04 1.30 7.86 -2.38 -0.02 1.29 16 31 H 0.08 2.67 7.30 -2.38 -0.02 2.65 16 32 H 0.34 14.42 8.34 -89.69 -0.75 13.67 16 33 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.05 1.81 7.35 -2.39 -0.02 1.80 16 36 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 37 H 0.14 3.79 7.59 -2.91 -0.02 3.77 16 Total: -1.00 -70.26 324.16 4.11 -66.16 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: 0.32 Total: 16.15 kcal Atomic # 6 Polarization: -16.88 SS G_CDS: 4.26 Total: -12.62 kcal Atomic # 7 Polarization: -86.76 SS G_CDS: -2.84 Total: -89.60 kcal Atomic # 8 Polarization: -22.58 SS G_CDS: -0.23 Total: -22.82 kcal Atomic # 9 Polarization: -3.91 SS G_CDS: 0.75 Total: -3.15 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 1.85 Total: 45.88 kcal Total: -70.26 4.11 -66.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611727872.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.105 kcal (2) G-P(sol) polarization free energy of solvation -70.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds