Wall clock time and date at job start Tue Mar 31 2020 05:23:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.46884 * 2 1 4 4 H 1.08999 * 109.74647 * 177.39917 * 3 2 1 5 5 C 1.52252 * 109.61360 * 297.82733 * 3 2 1 6 6 C 1.39017 * 124.27795 * 317.09787 * 5 3 2 7 7 C 1.33008 * 115.66218 * 179.97438 * 6 5 3 8 8 S 1.75786 * 109.60989 * 0.02562 * 7 6 5 9 9 C 1.34795 * 122.07748 * 137.09300 * 5 3 2 10 10 C 1.51416 * 123.95783 * 0.10812 * 9 5 3 11 11 C 1.53356 * 108.07400 * 15.50725 * 10 9 5 12 12 N 1.46905 * 109.61408 * 56.97370 * 3 2 1 13 13 C 1.46909 * 110.99901 * 63.41041 * 12 3 2 14 14 C 1.53003 * 109.46724 * 76.33591 * 13 12 3 15 15 H 1.08998 * 109.47156 * 53.55347 * 14 13 12 16 16 O 1.42899 * 109.47245 * 293.55014 * 14 13 12 17 17 C 1.50692 * 109.46815 * 173.54975 * 14 13 12 18 18 H 1.08005 * 120.00339 * 0.02562 * 17 14 13 19 19 C 1.37875 * 120.00082 * 179.97438 * 17 14 13 20 20 N 1.31515 * 119.99954 * 0.02562 * 19 17 14 21 21 Si 1.86796 * 120.00292 * 179.97438 * 19 17 14 22 22 H 1.48504 * 109.47446 * 0.02562 * 21 19 17 23 23 H 1.48493 * 109.47714 * 240.00297 * 21 19 17 24 24 H 1.48504 * 109.47357 * 120.00195 * 21 19 17 25 25 H 1.09007 * 109.46952 * 55.19884 * 1 2 3 26 26 H 1.08997 * 109.47042 * 175.19460 * 1 2 3 27 27 H 1.08998 * 109.47403 * 295.19667 * 1 2 3 28 28 H 1.08996 * 109.47393 * 240.00152 * 2 1 3 29 29 H 1.09002 * 109.47155 * 119.99543 * 2 1 3 30 30 H 1.08002 * 122.16615 * 359.92249 * 6 5 3 31 31 H 1.08006 * 125.19767 * 180.02562 * 7 6 5 32 32 H 1.09004 * 109.74162 * 135.15223 * 10 9 5 33 33 H 1.09000 * 109.74191 * 255.81519 * 10 9 5 34 34 H 1.09004 * 109.53315 * 191.29810 * 11 10 9 35 35 H 1.09002 * 109.53488 * 71.06724 * 11 10 9 36 36 H 1.08994 * 109.46945 * 316.33689 * 13 12 3 37 37 H 1.09001 * 109.46902 * 196.33511 * 13 12 3 38 38 H 0.96698 * 114.00018 * 300.00358 * 16 14 13 39 39 H 0.97001 * 120.00213 * 359.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 3.1289 1.4482 0.0466 5 6 1.5791 2.1475 -1.2683 6 6 1.6056 1.5762 -2.5354 7 6 1.1613 2.3469 -3.5242 8 16 0.6641 3.9051 -2.8799 9 6 1.1003 3.4075 -1.2533 10 6 0.9711 4.2484 -0.0007 11 6 1.8119 3.5925 1.1014 12 7 1.4932 2.1589 1.1602 13 6 1.9681 1.5651 2.4172 14 6 3.4168 1.9896 2.6663 15 1 3.4900 3.0762 2.6208 16 8 4.2606 1.4130 1.6675 17 6 3.8526 1.5135 4.0280 18 1 3.1653 0.9628 4.6531 19 6 5.1292 1.7800 4.4756 20 7 5.9664 2.4501 3.7142 21 14 5.6693 1.1904 6.1638 22 1 4.5494 0.4661 6.8169 23 1 6.0559 2.3581 6.9957 24 1 6.8320 0.2778 6.0209 25 1 -0.3633 0.5866 -0.8439 26 1 -0.3633 -1.0240 -0.0861 27 1 -0.3634 0.4375 0.9298 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.9645 0.5720 -2.7059 31 1 1.1133 2.0594 -4.5642 32 1 1.3391 5.2560 -0.1942 33 1 -0.0734 4.2909 0.3081 34 1 1.5816 4.0567 2.0604 35 1 2.8708 3.7216 0.8776 36 1 1.9145 0.4786 2.3488 37 1 1.3421 1.9087 3.2407 38 1 4.2455 0.4463 1.6501 39 1 5.6859 2.7566 2.8377 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000809572387.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:24 Heat of formation + Delta-G solvation = -22.041857 kcal Electronic energy + Delta-G solvation = -21009.903350 eV Core-core repulsion = 18043.626021 eV Total energy + Delta-G solvation = -2966.277329 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.78408 -36.98484 -34.92581 -33.67851 -32.16967 -31.33087 -28.40275 -27.77134 -25.18370 -24.10207 -23.41905 -21.77605 -21.11111 -19.71289 -17.63516 -17.16221 -16.99780 -16.03423 -15.16670 -14.88378 -14.54007 -14.12302 -13.82286 -13.66721 -13.51873 -13.12350 -12.83736 -12.60621 -12.36862 -12.19138 -11.78976 -11.62348 -11.41306 -11.07629 -11.02363 -10.86868 -10.80948 -10.61548 -10.27761 -10.16759 -10.15299 -9.89780 -9.71914 -8.53150 -8.45447 -8.35611 -8.12407 -7.25597 -6.37129 -4.22897 1.18386 1.78110 2.14530 2.90573 3.39797 3.42443 3.56024 4.36165 4.49324 4.93706 4.97096 5.22696 5.29021 5.34984 5.47154 5.52187 5.64153 5.64734 5.77135 5.82010 5.90278 5.95298 6.10828 6.12125 6.22253 6.22863 6.27596 6.35398 6.44018 6.53782 6.63820 6.65515 6.74093 6.82034 7.29651 7.53361 7.67989 8.00748 8.32195 8.81915 8.98871 9.62638 11.00578 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.029296 B = 0.004863 C = 0.004628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.516350 B = 5755.932260 C = 6048.282231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.109 4.109 3 C 0.129 3.871 4 H 0.093 0.907 5 C -0.089 4.089 6 C -0.116 4.116 7 C -0.223 4.223 8 S 0.067 5.933 9 C -0.167 4.167 10 C -0.041 4.041 11 C 0.059 3.941 12 N -0.529 5.529 13 C 0.032 3.968 14 C 0.180 3.820 15 H 0.054 0.946 16 O -0.579 6.579 17 C -0.648 4.648 18 H 0.050 0.950 19 C 0.035 3.965 20 N -0.893 5.893 21 Si 1.070 2.930 22 H -0.289 1.289 23 H -0.287 1.287 24 H -0.287 1.287 25 H 0.049 0.951 26 H 0.038 0.962 27 H 0.063 0.937 28 H 0.059 0.941 29 H 0.066 0.934 30 H 0.135 0.865 31 H 0.159 0.841 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.047 0.953 36 H 0.070 0.930 37 H 0.072 0.928 38 H 0.352 0.648 39 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.723 -0.645 -11.197 15.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.147 4.147 3 C 0.019 3.981 4 H 0.110 0.890 5 C -0.101 4.101 6 C -0.147 4.147 7 C -0.358 4.358 8 S 0.332 5.668 9 C -0.284 4.284 10 C -0.081 4.081 11 C -0.070 4.070 12 N -0.252 5.252 13 C -0.096 4.096 14 C 0.122 3.878 15 H 0.071 0.929 16 O -0.384 6.384 17 C -0.687 4.687 18 H 0.069 0.931 19 C -0.174 4.174 20 N -0.528 5.528 21 Si 0.899 3.101 22 H -0.215 1.215 23 H -0.213 1.213 24 H -0.214 1.214 25 H 0.068 0.932 26 H 0.057 0.943 27 H 0.082 0.918 28 H 0.077 0.923 29 H 0.085 0.915 30 H 0.153 0.847 31 H 0.177 0.823 32 H 0.092 0.908 33 H 0.099 0.901 34 H 0.096 0.904 35 H 0.065 0.935 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.198 0.802 39 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -10.472 1.267 -10.992 15.234 hybrid contribution -0.025 -1.753 -0.361 1.790 sum -10.496 -0.487 -11.354 15.470 Atomic orbital electron populations 1.21593 0.95485 0.99672 1.02588 1.21526 0.96800 0.94965 1.01428 1.20895 0.99337 0.91959 0.85910 0.88951 1.19697 1.01483 0.93578 0.95307 1.19937 1.02121 1.01125 0.91512 1.25237 1.10191 0.97526 1.02883 1.83923 1.65629 1.16571 1.00675 1.24767 1.07630 0.98892 0.97132 1.20400 1.01311 0.96411 0.89952 1.22056 0.97856 0.89327 0.97806 1.62270 1.58856 1.01777 1.02302 1.22939 0.97574 0.99322 0.89727 1.20254 0.85433 0.94520 0.87607 0.92866 1.86449 1.70239 1.23109 1.58592 1.22469 1.01518 1.42153 1.02524 0.93133 1.25771 0.93202 0.94180 1.04247 1.70594 1.37591 1.32480 1.12148 0.83554 0.75471 0.76351 0.74765 1.21536 1.21324 1.21353 0.93223 0.94303 0.91804 0.92260 0.91495 0.84721 0.82301 0.90812 0.90103 0.90358 0.93456 0.91207 0.90988 0.80243 0.90484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 9.51 37.16 0.35 -1.52 16 2 C -0.11 -1.58 5.13 -26.73 -0.14 -1.71 16 3 C 0.13 2.13 2.09 -68.09 -0.14 1.98 16 4 H 0.09 1.77 5.36 -51.93 -0.28 1.49 16 5 C -0.09 -1.38 4.31 -104.78 -0.45 -1.83 16 6 C -0.12 -1.57 9.17 -41.11 -0.38 -1.95 16 7 C -0.22 -2.74 11.21 28.92 0.32 -2.41 16 8 S 0.07 0.85 23.32 -107.50 -2.51 -1.65 16 9 C -0.17 -2.52 6.42 -35.18 -0.23 -2.75 16 10 C -0.04 -0.59 6.50 -27.35 -0.18 -0.77 16 11 C 0.06 1.02 4.19 -3.60 -0.02 1.00 16 12 N -0.53 -9.14 3.78 -226.80 -0.86 -9.99 16 13 C 0.03 0.62 5.01 -3.82 -0.02 0.60 16 14 C 0.18 4.23 1.96 -27.89 -0.05 4.17 16 15 H 0.05 1.38 6.08 -51.93 -0.32 1.06 16 16 O -0.58 -13.53 9.16 -35.23 -0.32 -13.85 16 17 C -0.65 -17.35 8.76 -34.44 -0.30 -17.66 16 18 H 0.05 1.35 7.74 -52.48 -0.41 0.94 16 19 C 0.03 0.97 5.40 -17.82 -0.10 0.88 16 20 N -0.89 -26.75 13.53 55.43 0.75 -26.00 16 21 Si 1.07 24.69 29.90 -169.99 -5.08 19.60 16 22 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 23 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 24 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 25 H 0.05 0.71 6.93 -51.93 -0.36 0.35 16 26 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.06 0.96 7.69 -51.93 -0.40 0.56 16 28 H 0.06 0.77 7.11 -51.93 -0.37 0.40 16 29 H 0.07 1.00 6.34 -51.93 -0.33 0.67 16 30 H 0.14 1.61 7.23 -52.49 -0.38 1.23 16 31 H 0.16 1.52 8.06 -52.48 -0.42 1.09 16 32 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.08 1.33 7.91 -51.93 -0.41 0.92 16 35 H 0.05 0.93 7.07 -51.93 -0.37 0.56 16 36 H 0.07 1.33 5.85 -51.93 -0.30 1.02 16 37 H 0.07 1.44 8.14 -51.93 -0.42 1.01 16 38 H 0.35 7.52 9.04 45.56 0.41 7.93 16 39 H 0.28 8.62 6.47 -40.82 -0.26 8.36 16 LS Contribution 312.11 15.07 4.70 4.70 Total: -1.00 -29.20 312.11 -9.32 -38.52 By element: Atomic # 1 Polarization: 15.32 SS G_CDS: -4.68 Total: 10.64 kcal Atomic # 6 Polarization: -20.64 SS G_CDS: -1.32 Total: -21.96 kcal Atomic # 7 Polarization: -35.89 SS G_CDS: -0.11 Total: -36.00 kcal Atomic # 8 Polarization: -13.53 SS G_CDS: -0.32 Total: -13.85 kcal Atomic # 14 Polarization: 24.69 SS G_CDS: -5.08 Total: 19.60 kcal Atomic # 16 Polarization: 0.85 SS G_CDS: -2.51 Total: -1.65 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -29.20 -9.32 -38.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809572387.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.476 kcal (2) G-P(sol) polarization free energy of solvation -29.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds