Wall clock time and date at job start Tue Mar 31 2020 05:29:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47377 * 2 1 4 4 N 1.46501 * 109.46836 * 119.99958 * 2 1 3 5 5 N 1.28444 * 125.19566 * 295.17249 * 4 2 1 6 6 C 1.30877 * 110.95219 * 179.97438 * 5 4 2 7 7 C 1.39648 * 107.88170 * 0.26679 * 6 5 4 8 8 C 1.36648 * 125.19509 * 115.17891 * 4 2 1 9 9 C 1.47021 * 126.89353 * 0.02844 * 8 4 2 10 10 O 1.21674 * 120.00336 * 306.70615 * 9 8 4 11 11 N 1.34777 * 119.99662 * 126.71202 * 9 8 4 12 12 C 1.36840 * 119.99939 * 179.97438 * 11 9 8 13 13 H 1.08003 * 119.99953 * 343.45087 * 12 11 9 14 14 C 1.39055 * 120.00303 * 163.45166 * 12 11 9 15 15 N 1.31365 * 119.99450 * 51.72438 * 14 12 11 16 16 Si 1.86796 * 120.00135 * 231.72502 * 14 12 11 17 17 H 1.48497 * 109.46933 * 59.99863 * 16 14 12 18 18 H 1.48496 * 109.47047 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.47160 * 299.99602 * 16 14 12 20 20 C 1.46500 * 120.00145 * 359.97199 * 11 9 8 21 21 C 1.50700 * 109.46642 * 93.37437 * 20 11 9 22 22 O 1.20825 * 120.00257 * 0.99410 * 21 20 11 23 23 O 1.34234 * 119.99908 * 181.00174 * 21 20 11 24 24 H 1.08996 * 109.47104 * 59.99690 * 1 2 3 25 25 H 1.08997 * 109.47537 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47209 * 300.00189 * 1 2 3 27 27 H 1.08999 * 109.46914 * 239.99431 * 2 1 3 28 28 H 1.09004 * 109.47256 * 184.23527 * 3 2 1 29 29 H 1.09003 * 109.47106 * 304.23459 * 3 2 1 30 30 H 1.09003 * 109.47443 * 64.23578 * 3 2 1 31 31 H 1.07996 * 126.06294 * 179.97438 * 6 5 4 32 32 H 1.07997 * 127.32730 * 179.73477 * 7 6 5 33 33 H 0.97002 * 119.99369 * 180.02562 * 15 14 12 34 34 H 1.09000 * 109.47502 * 213.37079 * 20 11 9 35 35 H 1.08995 * 109.47084 * 333.37640 * 20 11 9 36 36 H 0.96699 * 117.00416 * 185.01645 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 1.1962 5 7 1.8441 -0.2913 2.4045 6 6 2.3955 -1.1192 3.2551 7 6 2.9889 -2.1515 2.5254 8 6 2.7287 -1.8579 1.1969 9 6 3.1396 -2.6417 0.0229 10 8 2.3116 -2.9840 -0.8004 11 7 4.4336 -2.9811 -0.1414 12 6 4.8160 -3.7111 -1.2339 13 1 4.0759 -4.2398 -1.8161 14 6 6.1577 -3.7721 -1.5944 15 7 7.0629 -4.1043 -0.7023 16 14 6.6726 -3.3817 -3.3470 17 1 6.2740 -1.9909 -3.6818 18 1 8.1459 -3.5187 -3.4722 19 1 6.0071 -4.3257 -4.2804 20 6 5.4306 -2.5685 0.8495 21 6 5.6095 -3.6644 1.8683 22 8 4.9831 -4.6926 1.7660 23 8 6.4647 -3.4984 2.8895 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 3.1274 1.4433 -0.0759 29 1 1.6161 1.9777 -0.8496 30 1 1.7400 1.9339 0.9255 31 1 2.3961 -1.0190 4.3304 32 1 3.5330 -2.9994 2.9143 33 1 7.9989 -4.1465 -0.9537 34 1 6.3809 -2.3773 0.3510 35 1 5.0928 -1.6602 1.3484 36 1 6.6018 -4.2557 3.4750 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000827206813.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:45 Heat of formation + Delta-G solvation = -28.450189 kcal Electronic energy + Delta-G solvation = -23222.205842 eV Core-core repulsion = 19709.357412 eV Total energy + Delta-G solvation = -3512.848429 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.04219 -39.50716 -38.04263 -35.59209 -35.28849 -34.65206 -32.26939 -30.19198 -29.94192 -27.81999 -27.21638 -25.37820 -22.90065 -22.08979 -21.29131 -20.39452 -18.56542 -17.33556 -17.30175 -16.76032 -15.88231 -15.74490 -15.16124 -14.92481 -14.73148 -14.51531 -14.22315 -13.65700 -13.44376 -13.05573 -12.81688 -12.48842 -12.20182 -12.15957 -12.06176 -11.77493 -11.73670 -11.27828 -11.17389 -11.02944 -10.66289 -10.58810 -10.38814 -10.20700 -9.78551 -8.93893 -8.79401 -8.65616 -8.37710 -8.29873 -6.96942 -3.86873 2.11043 2.80255 3.03302 3.12025 3.18166 3.22171 3.24375 3.57341 3.91884 4.04930 4.49771 4.71686 4.78268 5.02456 5.18181 5.25610 5.36544 5.58905 5.69381 5.74629 5.78817 5.80696 5.93266 6.05765 6.21287 6.23495 6.26683 6.32988 6.36720 6.99458 7.23236 7.27751 7.28827 7.86719 8.18611 8.57028 8.78629 8.88699 9.09194 9.69348 10.13355 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.016466 B = 0.007708 C = 0.005919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.106328 B = 3631.595077 C = 4729.221570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.143 3.857 3 C -0.158 4.158 4 N -0.265 5.265 5 N -0.298 5.298 6 C -0.004 4.004 7 C -0.222 4.222 8 C 0.013 3.987 9 C 0.500 3.500 10 O -0.572 6.572 11 N -0.395 5.395 12 C -0.349 4.349 13 H 0.118 0.882 14 C 0.071 3.929 15 N -0.808 5.808 16 Si 0.888 3.112 17 H -0.268 1.268 18 H -0.284 1.284 19 H -0.267 1.267 20 C 0.116 3.884 21 C 0.482 3.518 22 O -0.500 6.500 23 O -0.530 6.530 24 H 0.075 0.925 25 H 0.065 0.935 26 H 0.066 0.934 27 H 0.114 0.886 28 H 0.062 0.938 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.178 0.822 32 H 0.146 0.854 33 H 0.278 0.722 34 H 0.130 0.870 35 H 0.091 0.909 36 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.926 8.708 4.844 10.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.042 3.958 3 C -0.216 4.216 4 N -0.053 5.053 5 N -0.129 5.129 6 C -0.181 4.181 7 C -0.250 4.250 8 C -0.117 4.117 9 C 0.289 3.711 10 O -0.456 6.456 11 N -0.112 5.112 12 C -0.474 4.474 13 H 0.135 0.865 14 C -0.141 4.141 15 N -0.440 5.440 16 Si 0.711 3.289 17 H -0.194 1.194 18 H -0.210 1.210 19 H -0.192 1.192 20 C -0.010 4.010 21 C 0.322 3.678 22 O -0.385 6.385 23 O -0.341 6.341 24 H 0.093 0.907 25 H 0.084 0.916 26 H 0.085 0.915 27 H 0.132 0.868 28 H 0.081 0.919 29 H 0.094 0.906 30 H 0.090 0.910 31 H 0.195 0.805 32 H 0.164 0.836 33 H 0.089 0.911 34 H 0.147 0.853 35 H 0.109 0.891 36 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -3.039 9.609 3.991 10.839 hybrid contribution 1.154 -1.456 -0.056 1.859 sum -1.885 8.152 3.935 9.246 Atomic orbital electron populations 1.22085 0.93106 1.03376 1.02852 1.21615 0.95896 0.93801 0.84449 1.22112 1.01950 0.94195 1.03348 1.45879 1.38111 1.16091 1.05187 1.72955 1.23436 1.26573 0.89909 1.23367 1.01632 0.93744 0.99367 1.22154 1.08824 1.02890 0.91178 1.21972 1.01525 0.91389 0.96779 1.16406 0.82765 0.86315 0.85640 1.90661 1.49986 1.60004 1.44985 1.43409 1.04192 1.45327 1.18301 1.19370 0.93359 1.32835 1.01835 0.86470 1.25286 0.95088 0.94036 0.99729 1.70439 1.03654 1.31837 1.38093 0.86602 0.76927 0.80636 0.84711 1.19367 1.21023 1.19155 1.21382 0.97687 0.93091 0.88815 1.24023 0.75144 0.89323 0.79292 1.90666 1.45860 1.29191 1.72814 1.84548 1.62561 1.46516 1.40461 0.90660 0.91592 0.91515 0.86760 0.91938 0.90590 0.91022 0.80501 0.83592 0.91107 0.85297 0.89100 0.74764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.13 9.44 37.16 0.35 -1.78 16 2 C 0.14 2.26 3.57 -67.93 -0.24 2.02 16 3 C -0.16 -1.99 9.34 37.15 0.35 -1.65 16 4 N -0.26 -4.91 3.09 -50.70 -0.16 -5.07 16 5 N -0.30 -5.23 11.45 30.58 0.35 -4.88 16 6 C 0.00 -0.06 12.03 -17.43 -0.21 -0.27 16 7 C -0.22 -4.26 9.11 -38.95 -0.35 -4.62 16 8 C 0.01 0.27 5.57 -82.06 -0.46 -0.18 16 9 C 0.50 12.43 6.83 -12.70 -0.09 12.34 16 10 O -0.57 -15.72 16.11 5.21 0.08 -15.64 16 11 N -0.39 -9.86 2.13 -117.46 -0.25 -10.11 16 12 C -0.35 -9.37 9.11 -15.01 -0.14 -9.51 16 13 H 0.12 3.39 7.50 -52.48 -0.39 3.00 16 14 C 0.07 1.74 4.60 -17.45 -0.08 1.66 16 15 N -0.81 -19.78 10.90 55.50 0.61 -19.17 16 16 Si 0.89 18.86 29.69 -169.99 -5.05 13.82 16 17 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 18 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 19 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 20 C 0.12 2.53 4.85 -5.19 -0.03 2.50 16 21 C 0.48 10.38 5.62 36.01 0.20 10.58 16 22 O -0.50 -12.57 16.80 -18.75 -0.32 -12.89 16 23 O -0.53 -9.08 13.42 -39.27 -0.53 -9.61 16 24 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 26 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.11 2.02 6.85 -51.93 -0.36 1.67 16 28 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.07 0.89 7.99 -51.93 -0.42 0.48 16 31 H 0.18 2.24 8.06 -52.49 -0.42 1.81 16 32 H 0.15 2.84 6.01 -52.49 -0.32 2.53 16 33 H 0.28 6.30 8.31 -40.82 -0.34 5.97 16 34 H 0.13 2.85 5.89 -51.93 -0.31 2.54 16 35 H 0.09 1.77 6.14 -51.93 -0.32 1.45 16 36 H 0.40 5.04 9.11 45.56 0.41 5.46 16 LS Contribution 311.57 15.07 4.70 4.70 Total: -1.00 -32.21 311.57 -4.62 -36.83 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: -3.36 Total: 10.92 kcal Atomic # 6 Polarization: 11.79 SS G_CDS: -0.69 Total: 11.10 kcal Atomic # 7 Polarization: -39.77 SS G_CDS: 0.55 Total: -39.22 kcal Atomic # 8 Polarization: -37.38 SS G_CDS: -0.76 Total: -38.14 kcal Atomic # 14 Polarization: 18.86 SS G_CDS: -5.05 Total: 13.82 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -32.21 -4.62 -36.83 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827206813.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.378 kcal (2) G-P(sol) polarization free energy of solvation -32.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds