Wall clock time and date at job start Tue Mar 31 2020 06:30:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47071 * 2 1 4 4 C 1.50704 * 109.46745 * 240.00088 * 2 1 3 5 5 H 1.07994 * 120.00118 * 304.99353 * 4 2 1 6 6 C 1.37881 * 119.99490 * 124.99867 * 4 2 1 7 7 N 1.31521 * 119.99428 * 184.79489 * 6 4 2 8 8 Si 1.86793 * 120.00479 * 4.79008 * 6 4 2 9 9 H 1.48494 * 109.47153 * 84.65102 * 8 6 4 10 10 H 1.48497 * 109.47101 * 204.65460 * 8 6 4 11 11 H 1.48505 * 109.46882 * 324.65300 * 8 6 4 12 12 N 1.46898 * 109.47139 * 120.00386 * 2 1 3 13 13 C 1.46898 * 111.00207 * 58.94767 * 12 2 1 14 14 C 1.46903 * 110.99973 * 294.99899 * 12 2 1 15 15 C 1.50693 * 109.47532 * 190.00293 * 14 12 2 16 16 C 1.37975 * 120.04924 * 259.72501 * 15 14 12 17 17 C 1.38311 * 120.18096 * 179.74495 * 16 15 14 18 18 C 1.38601 * 120.27587 * 0.54821 * 17 16 15 19 19 F 1.35101 * 119.95111 * 179.72607 * 18 17 16 20 20 C 1.38153 * 120.09820 * 359.70442 * 18 17 16 21 21 C 1.39602 * 120.05475 * 79.99495 * 15 14 12 22 22 C 1.47738 * 120.13756 * 0.02562 * 21 15 14 23 23 O 1.21469 * 119.99332 * 0.02562 * 22 21 15 24 24 O 1.34709 * 120.00284 * 179.97438 * 22 21 15 25 25 H 1.09002 * 109.47302 * 54.97211 * 1 2 3 26 26 H 1.08993 * 109.47593 * 174.97108 * 1 2 3 27 27 H 1.09001 * 109.47193 * 294.97406 * 1 2 3 28 28 H 0.96994 * 119.99408 * 179.97438 * 7 6 4 29 29 H 1.08994 * 109.47355 * 296.05105 * 13 12 2 30 30 H 1.09005 * 109.47017 * 56.04991 * 13 12 2 31 31 H 1.08996 * 109.47150 * 176.04474 * 13 12 2 32 32 H 1.09004 * 109.47063 * 310.00166 * 14 12 2 33 33 H 1.09001 * 109.47351 * 69.99378 * 14 12 2 34 34 H 1.08000 * 119.90964 * 0.02562 * 16 15 14 35 35 H 1.07995 * 119.86320 * 180.25385 * 17 16 15 36 36 H 1.07998 * 120.09630 * 180.02562 * 20 18 17 37 37 H 0.96703 * 116.99755 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 1.7065 -1.7179 -1.4432 6 6 2.9077 -0.0741 -2.0848 7 7 3.2724 -0.6566 -3.2061 8 14 3.5757 1.6152 -1.6495 9 1 4.7589 1.4667 -0.7646 10 1 3.9725 2.3256 -2.8917 11 1 2.5265 2.3962 -0.9463 12 7 2.0196 -0.6926 1.1994 13 6 1.5282 -2.0761 1.2459 14 6 1.6487 0.0390 2.4181 15 6 2.3679 -0.5572 3.6005 16 6 1.7084 -1.4287 4.4427 17 6 2.3674 -1.9816 5.5257 18 6 3.6905 -1.6558 5.7794 19 9 4.3261 -2.1955 6.8423 20 6 4.3603 -0.7804 4.9465 21 6 3.7007 -0.2243 3.8488 22 6 4.4100 0.7134 2.9542 23 8 3.8333 1.1967 2.0006 24 8 5.6960 1.0331 3.1966 25 1 -0.3634 0.5899 -0.8415 26 1 -0.3634 -1.0236 -0.0901 27 1 -0.3634 0.4339 0.9316 28 1 3.8880 -0.2087 -3.8072 29 1 0.4419 -2.0731 1.3347 30 1 1.8166 -2.5951 0.3317 31 1 1.9616 -2.5869 2.1057 32 1 1.9297 1.0869 2.3125 33 1 0.5722 -0.0345 2.5726 34 1 0.6761 -1.6833 4.2531 35 1 1.8474 -2.6663 6.1793 36 1 5.3914 -0.5270 5.1440 37 1 6.1177 1.6510 2.5838 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000827218093.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:25 Heat of formation + Delta-G solvation = -91.417812 kcal Electronic energy + Delta-G solvation = -22706.872450 eV Core-core repulsion = 19171.373578 eV Total energy + Delta-G solvation = -3535.498872 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -48.97709 -40.42073 -38.62951 -37.01346 -35.76944 -32.71586 -31.60266 -31.34995 -29.05611 -26.70649 -25.36508 -24.84722 -23.34597 -22.12966 -20.73105 -19.04305 -18.18510 -17.47954 -16.95769 -16.41132 -15.93549 -15.74969 -15.47189 -15.24754 -14.78894 -14.20471 -13.91772 -13.82013 -13.35173 -13.04088 -12.98398 -12.56018 -12.39365 -12.23159 -11.70754 -11.46530 -11.34890 -11.24595 -11.06798 -11.05880 -10.76084 -10.53232 -9.90615 -9.64953 -9.53112 -9.24034 -8.90656 -8.68138 -8.44186 -7.14572 -6.02699 -4.03137 0.60371 1.06820 2.67450 3.13303 3.42581 3.47758 3.57155 3.62748 4.10894 4.52982 4.57889 4.73899 4.80644 5.00262 5.13166 5.36869 5.54804 5.64461 5.81518 5.84254 5.90428 6.02527 6.14753 6.18162 6.28429 6.35209 6.41816 6.51542 6.65272 6.68178 6.81134 6.83580 7.05175 7.21379 7.70214 8.12232 8.17150 8.32765 8.65917 9.00578 9.61884 11.09156 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.021005 B = 0.006209 C = 0.005321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.695014 B = 4508.770218 C = 5260.960843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.170 3.830 3 H 0.059 0.941 4 C -0.492 4.492 5 H 0.072 0.928 6 C 0.075 3.925 7 N -0.900 5.900 8 Si 0.895 3.105 9 H -0.271 1.271 10 H -0.300 1.300 11 H -0.268 1.268 12 N -0.511 5.511 13 C 0.030 3.970 14 C 0.072 3.928 15 C -0.008 4.008 16 C -0.101 4.101 17 C -0.120 4.120 18 C 0.074 3.926 19 F -0.140 7.140 20 C -0.100 4.100 21 C -0.078 4.078 22 C 0.515 3.485 23 O -0.461 6.461 24 O -0.523 6.523 25 H 0.049 0.951 26 H 0.045 0.955 27 H 0.024 0.976 28 H 0.263 0.737 29 H 0.011 0.989 30 H 0.078 0.922 31 H 0.041 0.959 32 H 0.100 0.900 33 H 0.032 0.968 34 H 0.139 0.861 35 H 0.138 0.862 36 H 0.147 0.853 37 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.050 1.046 17.884 17.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.065 3.935 3 H 0.077 0.923 4 C -0.530 4.530 5 H 0.090 0.910 6 C -0.127 4.127 7 N -0.538 5.538 8 Si 0.724 3.276 9 H -0.196 1.196 10 H -0.227 1.227 11 H -0.194 1.194 12 N -0.234 5.234 13 C -0.119 4.119 14 C -0.056 4.056 15 C -0.010 4.010 16 C -0.119 4.119 17 C -0.139 4.139 18 C 0.054 3.946 19 F -0.119 7.119 20 C -0.119 4.119 21 C -0.080 4.080 22 C 0.357 3.643 23 O -0.346 6.346 24 O -0.336 6.336 25 H 0.068 0.932 26 H 0.064 0.936 27 H 0.043 0.957 28 H 0.072 0.928 29 H 0.030 0.970 30 H 0.097 0.903 31 H 0.060 0.940 32 H 0.118 0.882 33 H 0.050 0.950 34 H 0.157 0.843 35 H 0.156 0.844 36 H 0.165 0.835 37 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges 0.241 0.901 17.700 17.724 hybrid contribution -0.005 0.990 0.022 0.990 sum 0.236 1.892 17.722 17.824 Atomic orbital electron populations 1.22478 1.01100 1.00545 0.98795 1.19976 0.89396 0.96125 0.88040 0.92302 1.20846 1.26585 1.02333 1.03241 0.91020 1.25086 0.95196 0.97975 0.94474 1.69925 1.34199 1.38955 1.10714 0.86606 0.80279 0.84263 0.76459 1.19608 1.22724 1.19417 1.62856 1.59084 1.01283 1.00226 1.22284 0.96031 0.91706 1.01853 1.21436 0.95076 1.00313 0.88757 1.20265 0.92004 0.93447 0.95252 1.20922 1.00697 0.96495 0.93794 1.21329 0.93051 1.00687 0.98830 1.17469 0.91620 0.98206 0.87270 1.91500 1.82012 1.84575 1.53821 1.21376 1.01047 0.95877 0.93642 1.18655 0.93773 0.99926 0.95605 1.20621 0.79883 0.80339 0.83495 1.90986 1.66220 1.50228 1.27144 1.84486 1.27284 1.63781 1.58015 0.93178 0.93559 0.95724 0.92752 0.97016 0.90330 0.94021 0.88185 0.95018 0.84297 0.84371 0.83508 0.72842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.54 8.43 37.16 0.31 -3.23 16 2 C 0.17 4.04 2.28 -68.86 -0.16 3.88 16 3 H 0.06 1.50 4.37 -51.93 -0.23 1.27 16 4 C -0.49 -13.76 8.18 -34.44 -0.28 -14.04 16 5 H 0.07 2.16 7.10 -52.49 -0.37 1.79 16 6 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 7 N -0.90 -27.66 13.96 55.43 0.77 -26.89 16 8 Si 0.89 22.94 27.39 -169.99 -4.66 18.28 16 9 H -0.27 -6.93 7.11 56.52 0.40 -6.53 16 10 H -0.30 -7.61 7.11 56.52 0.40 -7.21 16 11 H -0.27 -6.70 6.20 56.52 0.35 -6.35 16 12 N -0.51 -10.79 4.03 -237.74 -0.96 -11.75 16 13 C 0.03 0.57 8.53 60.06 0.51 1.08 16 14 C 0.07 1.26 3.56 -4.98 -0.02 1.24 16 15 C -0.01 -0.13 4.60 -104.21 -0.48 -0.61 16 16 C -0.10 -1.21 8.74 -39.65 -0.35 -1.56 16 17 C -0.12 -1.31 10.02 -39.42 -0.39 -1.70 16 18 C 0.07 0.89 7.29 -39.48 -0.29 0.60 16 19 F -0.14 -1.70 17.26 2.25 0.04 -1.66 16 20 C -0.10 -1.29 9.60 -39.09 -0.38 -1.66 16 21 C -0.08 -1.17 5.87 -104.99 -0.62 -1.78 16 22 C 0.51 8.41 8.24 34.61 0.29 8.70 16 23 O -0.46 -9.20 13.54 -19.24 -0.26 -9.46 16 24 O -0.52 -6.75 12.68 -40.52 -0.51 -7.27 16 25 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 26 H 0.05 0.94 6.76 -51.93 -0.35 0.59 16 27 H 0.02 0.44 6.52 -51.93 -0.34 0.11 16 28 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 29 H 0.01 0.21 6.62 -51.93 -0.34 -0.14 16 30 H 0.08 1.72 6.44 -51.93 -0.33 1.38 16 31 H 0.04 0.71 6.66 -51.93 -0.35 0.37 16 32 H 0.10 1.90 5.78 -51.93 -0.30 1.60 16 33 H 0.03 0.51 6.68 -51.93 -0.35 0.17 16 34 H 0.14 1.42 8.03 -52.49 -0.42 0.99 16 35 H 0.14 1.14 8.06 -52.49 -0.42 0.71 16 36 H 0.15 1.68 7.61 -52.49 -0.40 1.28 16 37 H 0.41 3.85 9.11 45.56 0.42 4.26 16 LS Contribution 306.27 15.07 4.62 4.62 Total: -1.00 -32.59 306.27 -6.30 -38.89 By element: Atomic # 1 Polarization: 5.59 SS G_CDS: -3.40 Total: 2.20 kcal Atomic # 6 Polarization: -5.02 SS G_CDS: -1.94 Total: -6.96 kcal Atomic # 7 Polarization: -38.45 SS G_CDS: -0.18 Total: -38.64 kcal Atomic # 8 Polarization: -15.95 SS G_CDS: -0.77 Total: -16.73 kcal Atomic # 9 Polarization: -1.70 SS G_CDS: 0.04 Total: -1.66 kcal Atomic # 14 Polarization: 22.94 SS G_CDS: -4.66 Total: 18.28 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -32.59 -6.30 -38.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827218093.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.523 kcal (2) G-P(sol) polarization free energy of solvation -32.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds