Wall clock time and date at job start Tue Mar 31 2020 05:30:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50702 * 119.99932 * 2 1 4 4 N 1.46500 * 109.47089 * 124.72256 * 3 2 1 5 5 C 1.34777 * 126.58402 * 124.71255 * 4 3 2 6 6 C 1.36669 * 106.83504 * 179.88332 * 5 4 3 7 7 C 1.47384 * 125.78481 * 180.14448 * 6 5 4 8 8 O 1.21517 * 119.99697 * 0.30207 * 7 6 5 9 9 O 1.34746 * 120.00274 * 180.30382 * 7 6 5 10 10 C 1.45202 * 116.99976 * 180.02562 * 9 7 6 11 11 C 1.53005 * 109.47092 * 179.97438 * 10 9 7 12 12 O 1.42908 * 109.46723 * 65.00072 * 11 10 9 13 13 C 1.42909 * 113.99562 * 179.97438 * 12 11 10 14 14 C 1.50697 * 109.46918 * 179.97438 * 13 12 11 15 15 H 1.08005 * 120.00040 * 0.02562 * 14 13 12 16 16 C 1.37878 * 120.00144 * 179.97438 * 14 13 12 17 17 N 1.31517 * 119.99454 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00306 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.46974 * 90.00176 * 18 16 14 20 20 H 1.48500 * 109.47166 * 210.00166 * 18 16 14 21 21 H 1.48506 * 109.46767 * 330.00198 * 18 16 14 22 22 N 1.34451 * 108.43728 * 0.38291 * 6 5 4 23 23 N 1.28757 * 109.50928 * 359.76029 * 22 6 5 24 24 H 1.08002 * 119.99713 * 0.27722 * 1 2 3 25 25 H 1.07999 * 120.00046 * 180.27508 * 1 2 3 26 26 H 1.08002 * 119.99708 * 179.71665 * 2 1 3 27 27 H 1.09002 * 109.47005 * 244.72313 * 3 2 1 28 28 H 1.08999 * 109.47073 * 4.72010 * 3 2 1 29 29 H 1.07996 * 126.58668 * 0.02562 * 5 4 3 30 30 H 1.09000 * 109.46949 * 299.99772 * 10 9 7 31 31 H 1.09001 * 109.47411 * 60.00202 * 10 9 7 32 32 H 1.08997 * 109.47390 * 184.99596 * 11 10 9 33 33 H 1.08998 * 109.47433 * 305.00482 * 11 10 9 34 34 H 1.08996 * 109.47163 * 299.99882 * 13 12 11 35 35 H 1.08998 * 109.47092 * 59.99681 * 13 12 11 36 36 H 0.97005 * 119.99470 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9891 1.3347 1.1353 5 6 4.3189 1.5470 1.0821 6 6 4.7802 1.4919 2.3675 7 6 6.1811 1.6714 2.7888 8 8 7.0408 1.8957 1.9598 9 8 6.5085 1.5869 4.0931 10 6 7.9070 1.7750 4.4353 11 6 8.0836 1.6450 5.9495 12 8 7.7721 0.3097 6.3524 13 6 7.9063 0.0801 7.7565 14 6 7.5545 -1.3519 8.0672 15 1 7.2584 -2.0200 7.2719 16 6 7.6115 -1.8096 9.3665 17 7 7.9726 -0.9962 10.3348 18 14 7.1761 -3.5849 9.7515 19 1 8.3980 -4.4242 9.6649 20 1 6.6132 -3.6702 11.1231 21 1 6.1709 -4.0714 8.7727 22 7 3.7404 1.2408 3.1820 23 7 2.6623 1.1416 2.4850 24 1 -0.5400 0.9353 -0.0045 25 1 -0.5400 -0.9353 0.0045 26 1 1.8500 -0.9353 0.0046 27 1 2.6252 1.4004 -0.9293 28 1 1.3582 2.1318 0.0846 29 1 4.9069 1.7284 0.1946 30 1 8.5090 1.0180 3.9326 31 1 8.2290 2.7663 4.1161 32 1 9.1155 1.8734 6.2160 33 1 7.4150 2.3422 6.4545 34 1 8.9347 0.2760 8.0600 35 1 7.2344 0.7449 8.2993 36 1 8.0124 -1.3181 11.2491 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000830120329.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:01 Heat of formation + Delta-G solvation = -10.480364 kcal Electronic energy + Delta-G solvation = -20597.744632 eV Core-core repulsion = 17085.675433 eV Total energy + Delta-G solvation = -3512.069199 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.43077 -39.99113 -36.99754 -36.41327 -35.94866 -33.18941 -32.69837 -31.32800 -29.94702 -27.63022 -26.85117 -24.46013 -22.69769 -22.36187 -21.96166 -21.06952 -20.44026 -18.43937 -17.05954 -16.65840 -16.47112 -16.07510 -16.03189 -15.70652 -15.20699 -14.96476 -14.54295 -14.30387 -14.07545 -13.65543 -13.04508 -12.86795 -12.61047 -12.27235 -12.02153 -11.88465 -11.44574 -11.36012 -10.89478 -10.80313 -10.74590 -10.70858 -10.53728 -10.32275 -10.16483 -9.98464 -9.54796 -9.05409 -8.79987 -8.13498 -6.05238 -4.06182 0.81427 1.26604 1.47247 2.05755 2.72467 3.00510 3.35544 3.40112 3.46862 3.93991 4.00214 4.15586 4.39122 4.43105 4.48202 4.70213 4.81065 4.85070 5.05684 5.26749 5.27739 5.31461 5.46634 5.52789 5.91634 5.93438 5.94273 5.99151 6.08453 6.16034 6.53713 7.13140 7.48054 7.64774 7.85525 7.93147 8.20108 8.60599 9.06631 9.58208 11.06467 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.016794 B = 0.003223 C = 0.002791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1666.866471 B = 8685.696382 C =10029.941399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.184 4.184 3 C 0.152 3.848 4 N -0.362 5.362 5 C 0.098 3.902 6 C -0.083 4.083 7 C 0.556 3.444 8 O -0.515 6.515 9 O -0.320 6.320 10 C 0.074 3.926 11 C 0.061 3.939 12 O -0.390 6.390 13 C 0.194 3.806 14 C -0.513 4.513 15 H 0.067 0.933 16 C 0.056 3.944 17 N -0.900 5.900 18 Si 0.908 3.092 19 H -0.279 1.279 20 H -0.285 1.285 21 H -0.271 1.271 22 N -0.172 5.172 23 N -0.055 5.055 24 H 0.103 0.897 25 H 0.109 0.891 26 H 0.119 0.881 27 H 0.114 0.886 28 H 0.104 0.896 29 H 0.208 0.792 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.064 0.936 33 H 0.051 0.949 34 H 0.006 0.994 35 H 0.008 0.992 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.042 7.712 -24.216 27.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.203 4.203 3 C 0.031 3.969 4 N -0.146 5.146 5 C -0.058 4.058 6 C -0.220 4.220 7 C 0.398 3.602 8 O -0.404 6.404 9 O -0.234 6.234 10 C 0.001 3.999 11 C -0.016 4.016 12 O -0.310 6.310 13 C 0.120 3.880 14 C -0.551 4.551 15 H 0.085 0.915 16 C -0.145 4.145 17 N -0.539 5.539 18 Si 0.735 3.265 19 H -0.205 1.205 20 H -0.211 1.211 21 H -0.196 1.196 22 N -0.047 5.047 23 N -0.036 5.036 24 H 0.121 0.879 25 H 0.127 0.873 26 H 0.137 0.863 27 H 0.132 0.868 28 H 0.122 0.878 29 H 0.225 0.775 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.082 0.918 33 H 0.069 0.931 34 H 0.024 0.976 35 H 0.026 0.974 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -11.925 7.370 -23.387 27.267 hybrid contribution 0.754 -0.481 -0.313 0.948 sum -11.171 6.888 -23.700 27.091 Atomic orbital electron populations 1.24015 0.95456 1.02919 0.95966 1.22877 0.96436 0.97380 1.03624 1.21130 0.92038 0.98374 0.85315 1.50652 1.06398 1.48058 1.09454 1.23321 0.84952 0.97506 1.00058 1.20351 0.93380 1.18103 0.90198 1.19409 0.86141 0.72914 0.81692 1.90845 1.49533 1.46532 1.53520 1.86755 1.30950 1.80931 1.24714 1.23308 0.78227 1.01818 0.96571 1.22322 0.99459 0.88611 0.91234 1.87932 1.89694 1.24956 1.28377 1.20232 0.95447 0.97187 0.75109 1.21062 1.45547 0.95173 0.93294 0.91504 1.24944 0.95297 0.98543 0.95749 1.69967 1.48118 1.35449 1.00386 0.86329 0.78719 0.83857 0.77562 1.20519 1.21081 1.19573 1.74927 0.96000 1.07684 1.26070 1.82150 1.17093 1.21457 0.82923 0.87866 0.87281 0.86288 0.86768 0.87838 0.77495 0.90255 0.90196 0.91841 0.93054 0.97640 0.97424 0.92698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.66 14.32 29.01 0.42 -0.25 16 2 C -0.18 -1.00 9.72 -36.03 -0.35 -1.35 16 3 C 0.15 0.69 6.98 -5.19 -0.04 0.66 16 4 N -0.36 -3.36 3.68 -62.23 -0.23 -3.59 16 5 C 0.10 0.94 11.27 -16.83 -0.19 0.75 16 6 C -0.08 -1.20 7.02 -83.57 -0.59 -1.79 16 7 C 0.56 9.02 7.96 34.45 0.27 9.29 16 8 O -0.52 -8.36 16.65 -19.28 -0.32 -8.68 16 9 O -0.32 -5.92 10.20 -43.40 -0.44 -6.36 16 10 C 0.07 1.23 5.85 37.16 0.22 1.45 16 11 C 0.06 1.17 6.33 37.16 0.24 1.41 16 12 O -0.39 -9.88 10.30 -38.80 -0.40 -10.28 16 13 C 0.19 5.51 5.69 36.00 0.20 5.72 16 14 C -0.51 -15.65 9.43 -34.44 -0.32 -15.98 16 15 H 0.07 2.04 7.81 -52.48 -0.41 1.63 16 16 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 17 N -0.90 -27.53 13.29 55.43 0.74 -26.80 16 18 Si 0.91 22.52 29.54 -169.99 -5.02 17.50 16 19 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 20 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 21 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 22 N -0.17 -2.85 12.39 32.84 0.41 -2.44 16 23 N -0.06 -0.77 13.63 60.35 0.82 0.05 16 24 H 0.10 0.34 7.84 -52.49 -0.41 -0.07 16 25 H 0.11 0.43 8.06 -52.49 -0.42 0.01 16 26 H 0.12 0.73 8.06 -52.49 -0.42 0.30 16 27 H 0.11 0.15 8.08 -51.93 -0.42 -0.27 16 28 H 0.10 0.33 7.79 -51.93 -0.40 -0.07 16 29 H 0.21 1.10 8.06 -52.49 -0.42 0.68 16 30 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 31 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 32 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 34 H 0.01 0.17 8.14 -51.93 -0.42 -0.26 16 35 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 36 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 333.88 15.07 5.03 5.03 Total: -1.00 -37.29 333.88 -4.24 -41.53 By element: Atomic # 1 Polarization: -2.84 SS G_CDS: -4.59 Total: -7.42 kcal Atomic # 6 Polarization: 1.70 SS G_CDS: -0.24 Total: 1.47 kcal Atomic # 7 Polarization: -34.51 SS G_CDS: 1.74 Total: -32.77 kcal Atomic # 8 Polarization: -24.16 SS G_CDS: -1.16 Total: -25.33 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -37.29 -4.24 -41.53 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830120329.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.047 kcal (2) G-P(sol) polarization free energy of solvation -37.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds