Wall clock time and date at job start Tue Mar 31 2020 06:30:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.47121 * 2 1 4 4 C 1.50697 * 109.47434 * 239.99142 * 2 1 3 5 5 H 1.08000 * 120.00189 * 239.99904 * 4 2 1 6 6 C 1.37882 * 119.99554 * 60.00143 * 4 2 1 7 7 N 1.31516 * 120.00095 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99601 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47413 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.47023 * 120.00059 * 8 6 4 11 11 H 1.48495 * 109.47178 * 239.99631 * 8 6 4 12 12 N 1.46905 * 109.47200 * 119.99264 * 2 1 3 13 13 C 1.46900 * 110.99850 * 58.95317 * 12 2 1 14 14 C 1.46906 * 111.00051 * 295.00351 * 12 2 1 15 15 C 1.50699 * 109.47140 * 189.99841 * 14 12 2 16 16 C 1.38345 * 119.85851 * 259.72611 * 15 14 12 17 17 C 1.37938 * 120.17955 * 179.72576 * 16 15 14 18 18 C 1.39650 * 119.89131 * 0.57065 * 17 16 15 19 19 C 1.47734 * 120.13245 * 179.73178 * 18 17 16 20 20 O 1.21470 * 120.00175 * 179.97438 * 19 18 17 21 21 O 1.34712 * 120.00158 * 359.97267 * 19 18 17 22 22 C 1.39585 * 119.72985 * 359.69944 * 18 17 16 23 23 C 1.38192 * 119.81572 * 0.02562 * 22 18 17 24 24 F 1.35108 * 119.94868 * 179.97438 * 23 22 18 25 25 H 1.09002 * 109.46927 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47343 * 300.00378 * 1 2 3 27 27 H 1.09001 * 109.47209 * 60.00959 * 1 2 3 28 28 H 0.96999 * 119.99537 * 180.02562 * 7 6 4 29 29 H 1.08996 * 109.47030 * 296.04770 * 13 12 2 30 30 H 1.08999 * 109.46702 * 56.04909 * 13 12 2 31 31 H 1.08996 * 109.46890 * 176.04778 * 13 12 2 32 32 H 1.09004 * 109.47040 * 309.99779 * 14 12 2 33 33 H 1.09000 * 109.47033 * 69.99731 * 14 12 2 34 34 H 1.08000 * 119.91453 * 0.02562 * 16 15 14 35 35 H 1.07991 * 120.05330 * 180.27324 * 17 16 15 36 36 H 0.96698 * 117.00210 * 180.02562 * 21 19 18 37 37 H 1.07997 * 120.08485 * 180.02562 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7106 -1.2303 5 1 2.6533 -1.5886 -1.1311 6 6 1.6993 -0.2396 -2.4827 7 7 0.9436 0.8300 -2.6034 8 14 2.3226 -1.1200 -4.0077 9 1 3.1475 -2.2867 -3.6034 10 1 1.1679 -1.5871 -4.8163 11 1 3.1473 -0.1863 -4.8159 12 7 2.0196 -0.6924 1.1996 13 6 1.5283 -2.0760 1.2462 14 6 1.6486 0.0394 2.4181 15 6 2.3678 -0.5567 3.6007 16 6 1.7027 -1.4301 4.4426 17 6 2.3562 -1.9840 5.5237 18 6 3.6893 -1.6528 5.7755 19 6 4.3926 -2.2383 6.9353 20 8 5.5523 -1.9490 7.1518 21 8 3.7478 -3.0932 7.7528 22 6 4.3547 -0.7668 4.9266 23 6 3.6905 -0.2232 3.8436 24 9 4.3318 0.6351 3.0204 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5137 -0.8901 28 1 0.7090 1.1610 -3.4845 29 1 0.4419 -2.0729 1.3350 30 1 1.8167 -2.5949 0.3322 31 1 1.9616 -2.5866 2.1062 32 1 1.9296 1.0873 2.3125 33 1 0.5721 -0.0343 2.5726 34 1 0.6704 -1.6826 4.2502 35 1 1.8364 -2.6689 6.1771 36 1 4.2493 -3.4501 8.4985 37 1 5.3858 -0.5071 5.1157 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833515305.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:56 Heat of formation + Delta-G solvation = -102.645054 kcal Electronic energy + Delta-G solvation = -21792.498994 eV Core-core repulsion = 18256.513272 eV Total energy + Delta-G solvation = -3535.985722 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -48.63574 -40.57974 -38.96049 -37.04264 -36.32441 -33.20489 -31.69015 -30.71249 -28.65480 -27.26940 -25.22445 -24.73547 -23.13089 -22.39283 -21.10613 -19.28975 -18.52157 -17.77441 -16.34906 -16.32846 -15.94592 -15.82951 -15.58938 -15.26674 -14.91394 -14.25847 -14.07535 -13.70819 -13.62109 -13.16108 -12.91492 -12.59928 -12.33777 -11.95937 -11.79133 -11.49005 -11.39417 -11.12244 -11.10031 -10.88375 -10.79170 -10.65851 -10.47953 -10.06379 -9.88474 -9.15318 -8.92660 -8.69945 -8.41566 -7.25348 -6.03605 -4.07220 0.44565 1.11224 2.30748 2.70326 3.29179 3.37333 3.41772 3.50815 4.33594 4.40039 4.57628 4.67997 4.86643 4.93161 5.08449 5.23456 5.29521 5.58919 5.66793 5.93995 5.97675 6.00225 6.06721 6.15584 6.20111 6.26064 6.37087 6.60977 6.73066 6.76657 6.83925 7.05437 7.40869 7.62510 7.65889 7.78869 8.05670 8.31696 8.52361 8.98425 9.57882 11.03644 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.030784 B = 0.003783 C = 0.003714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.331875 B = 7399.226940 C = 7537.395068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.211 3.789 3 H 0.041 0.959 4 C -0.499 4.499 5 H 0.064 0.936 6 C 0.058 3.942 7 N -0.894 5.894 8 Si 0.897 3.103 9 H -0.273 1.273 10 H -0.286 1.286 11 H -0.284 1.284 12 N -0.526 5.526 13 C 0.031 3.969 14 C 0.082 3.918 15 C -0.057 4.057 16 C -0.104 4.104 17 C -0.073 4.073 18 C -0.115 4.115 19 C 0.532 3.468 20 O -0.514 6.514 21 O -0.511 6.511 22 C -0.094 4.094 23 C 0.113 3.887 24 F -0.121 7.121 25 H 0.031 0.969 26 H 0.007 0.993 27 H 0.089 0.911 28 H 0.260 0.740 29 H 0.018 0.982 30 H 0.077 0.923 31 H 0.042 0.958 32 H 0.083 0.917 33 H 0.046 0.954 34 H 0.139 0.861 35 H 0.142 0.858 36 H 0.414 0.586 37 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.786 -5.399 17.896 18.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.105 3.895 3 H 0.059 0.941 4 C -0.538 4.538 5 H 0.082 0.918 6 C -0.143 4.143 7 N -0.534 5.534 8 Si 0.725 3.275 9 H -0.197 1.197 10 H -0.212 1.212 11 H -0.210 1.210 12 N -0.250 5.250 13 C -0.117 4.117 14 C -0.046 4.046 15 C -0.059 4.059 16 C -0.122 4.122 17 C -0.091 4.091 18 C -0.116 4.116 19 C 0.377 3.623 20 O -0.404 6.404 21 O -0.323 6.323 22 C -0.113 4.113 23 C 0.093 3.907 24 F -0.099 7.099 25 H 0.050 0.950 26 H 0.026 0.974 27 H 0.108 0.892 28 H 0.070 0.930 29 H 0.037 0.963 30 H 0.095 0.905 31 H 0.061 0.939 32 H 0.101 0.899 33 H 0.064 0.936 34 H 0.157 0.843 35 H 0.159 0.841 36 H 0.273 0.727 37 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 1.344 -5.019 17.397 18.156 hybrid contribution -0.156 -0.482 -0.500 0.712 sum 1.188 -5.500 16.897 17.809 Atomic orbital electron populations 1.22416 1.00733 0.99417 1.00632 1.19354 0.89799 0.94696 0.85641 0.94088 1.21134 1.30568 1.12521 0.89549 0.91826 1.24921 0.95204 0.95118 0.99014 1.69892 1.37097 1.23029 1.23343 0.86459 0.78525 0.79683 0.82859 1.19737 1.21192 1.21024 1.62437 1.59417 1.01978 1.01150 1.22291 0.96798 0.91027 1.01596 1.21078 0.96430 0.98550 0.88515 1.20510 0.92757 0.95865 0.96735 1.21001 1.00776 0.96372 0.94075 1.21409 0.92819 0.98015 0.96888 1.18634 0.94962 1.02323 0.95726 1.20792 0.84199 0.75683 0.81667 1.90896 1.17804 1.59235 1.72417 1.84552 1.48610 1.58165 1.40963 1.21140 1.01142 0.96010 0.93044 1.17227 0.90638 0.92902 0.89926 1.91577 1.81086 1.66788 1.70428 0.95021 0.97376 0.89219 0.93031 0.96323 0.90471 0.93944 0.89860 0.93633 0.84339 0.84067 0.72720 0.83501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.00 8.28 37.15 0.31 -3.70 16 2 C 0.21 5.15 2.34 -68.87 -0.16 4.99 16 3 H 0.04 1.11 8.03 -51.93 -0.42 0.70 16 4 C -0.50 -13.41 7.88 -34.44 -0.27 -13.68 16 5 H 0.06 1.73 6.77 -52.49 -0.36 1.37 16 6 C 0.06 1.59 5.30 -17.82 -0.09 1.49 16 7 N -0.89 -25.09 11.32 55.43 0.63 -24.46 16 8 Si 0.90 21.18 29.54 -169.99 -5.02 16.15 16 9 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 10 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 N -0.53 -10.90 4.73 -237.73 -1.13 -12.03 16 13 C 0.03 0.59 8.51 60.06 0.51 1.10 16 14 C 0.08 1.42 4.25 -4.97 -0.02 1.39 16 15 C -0.06 -0.84 4.58 -104.47 -0.48 -1.32 16 16 C -0.10 -1.22 8.72 -39.65 -0.35 -1.56 16 17 C -0.07 -0.77 9.62 -39.16 -0.38 -1.14 16 18 C -0.11 -1.37 5.87 -104.99 -0.62 -1.99 16 19 C 0.53 5.97 8.27 34.61 0.29 6.26 16 20 O -0.51 -7.17 17.13 -19.24 -0.33 -7.50 16 21 O -0.51 -3.93 12.68 -40.53 -0.51 -4.44 16 22 C -0.09 -1.26 9.57 -39.10 -0.37 -1.63 16 23 C 0.11 1.72 7.23 -39.48 -0.29 1.43 16 24 F -0.12 -2.09 16.64 2.25 0.04 -2.06 16 25 H 0.03 0.71 6.47 -51.93 -0.34 0.37 16 26 H 0.01 0.15 6.75 -51.93 -0.35 -0.20 16 27 H 0.09 2.33 6.07 -51.93 -0.32 2.01 16 28 H 0.26 6.96 8.31 -40.82 -0.34 6.63 16 29 H 0.02 0.33 6.51 -51.93 -0.34 0.00 16 30 H 0.08 1.59 6.41 -51.93 -0.33 1.25 16 31 H 0.04 0.70 6.66 -51.93 -0.35 0.35 16 32 H 0.08 1.49 7.79 -51.93 -0.40 1.09 16 33 H 0.05 0.74 6.79 -51.93 -0.35 0.39 16 34 H 0.14 1.38 8.03 -52.49 -0.42 0.96 16 35 H 0.14 1.15 7.61 -52.49 -0.40 0.75 16 36 H 0.41 1.28 9.11 45.56 0.42 1.70 16 37 H 0.15 1.88 7.65 -52.49 -0.40 1.48 16 LS Contribution 312.76 15.07 4.71 4.71 Total: -1.00 -30.73 312.76 -7.02 -37.75 By element: Atomic # 1 Polarization: 3.72 SS G_CDS: -3.49 Total: 0.23 kcal Atomic # 6 Polarization: -6.43 SS G_CDS: -1.92 Total: -8.36 kcal Atomic # 7 Polarization: -35.99 SS G_CDS: -0.50 Total: -36.49 kcal Atomic # 8 Polarization: -11.10 SS G_CDS: -0.84 Total: -11.94 kcal Atomic # 9 Polarization: -2.09 SS G_CDS: 0.04 Total: -2.06 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -30.73 -7.02 -37.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833515305.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.897 kcal (2) G-P(sol) polarization free energy of solvation -30.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds