Wall clock time and date at job start Tue Mar 31 2020 06:15:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 109.47290 * 2 1 4 4 C 1.50705 * 109.47046 * 120.00040 * 2 1 3 5 5 C 1.38213 * 120.01510 * 59.99457 * 4 2 1 6 6 C 1.38224 * 120.02596 * 179.97438 * 5 4 2 7 7 C 1.38271 * 120.05181 * 0.02562 * 6 5 4 8 8 C 1.38177 * 120.02469 * 0.02562 * 7 6 5 9 9 C 1.38443 * 120.00937 * 239.72606 * 4 2 1 10 10 F 1.35103 * 120.02737 * 359.97438 * 9 4 2 11 11 C 1.53002 * 109.47067 * 239.99506 * 2 1 3 12 12 H 1.08999 * 109.47252 * 184.60012 * 11 2 1 13 13 O 1.42899 * 109.46990 * 304.59649 * 11 2 1 14 14 C 1.50698 * 109.47066 * 64.59830 * 11 2 1 15 15 O 1.21289 * 120.00349 * 248.47696 * 14 11 2 16 16 N 1.34776 * 120.00032 * 68.47284 * 14 11 2 17 17 C 1.46507 * 119.99912 * 5.24061 * 16 14 11 18 18 C 1.37095 * 120.00210 * 185.23559 * 16 14 11 19 19 H 1.07998 * 120.00165 * 340.28556 * 18 16 14 20 20 C 1.38957 * 120.00079 * 160.28422 * 18 16 14 21 21 N 1.31416 * 119.99893 * 345.38145 * 20 18 16 22 22 Si 1.86796 * 120.00021 * 165.38274 * 20 18 16 23 23 H 1.48503 * 109.47146 * 60.00411 * 22 20 18 24 24 H 1.48502 * 109.46981 * 179.97438 * 22 20 18 25 25 H 1.48490 * 109.47234 * 300.00085 * 22 20 18 26 26 H 1.09004 * 109.47588 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47166 * 300.00396 * 1 2 3 28 28 H 1.09004 * 109.47252 * 60.00380 * 1 2 3 29 29 H 1.08004 * 119.98912 * 359.95825 * 5 4 2 30 30 H 1.07997 * 119.97883 * 180.02562 * 6 5 4 31 31 H 1.07994 * 119.98916 * 179.97438 * 7 6 5 32 32 H 1.07995 * 120.01330 * 179.97438 * 8 7 6 33 33 H 0.96706 * 114.00007 * 60.00535 * 13 11 2 34 34 H 1.09004 * 109.47088 * 24.89287 * 17 16 14 35 35 H 1.08997 * 109.47255 * 144.89846 * 17 16 14 36 36 H 1.09003 * 109.46849 * 264.89627 * 17 16 14 37 37 H 0.96994 * 120.00200 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 1.6985 -2.0336 1.4496 6 6 2.1595 -2.6856 2.5778 7 6 2.9546 -2.0149 3.4888 8 6 3.2888 -0.6917 3.2724 9 6 2.8329 -0.0395 2.1391 10 9 3.1648 1.2522 1.9230 11 6 2.0400 -0.7214 -1.2492 12 1 3.1268 -0.7933 -1.2090 13 8 1.4775 -2.0339 -1.3043 14 6 1.6328 0.0516 -2.4771 15 8 0.8098 -0.4099 -3.2391 16 7 2.1831 1.2560 -2.7284 17 6 3.2589 1.7628 -1.8727 18 6 1.7363 2.0068 -3.7849 19 1 1.1932 1.5357 -4.5908 20 6 1.9822 3.3740 -3.8189 21 7 2.3784 3.9976 -2.7320 22 14 1.7496 4.3256 -5.4094 23 1 0.3390 4.2036 -5.8574 24 1 2.0741 5.7568 -5.1819 25 1 2.6500 3.7731 -6.4529 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.0769 -2.5584 0.7391 30 1 1.8986 -3.7197 2.7480 31 1 3.3140 -2.5252 4.3702 32 1 3.9095 -0.1680 3.9843 33 1 0.5113 -2.0464 -1.3421 34 1 3.7743 0.9252 -1.4025 35 1 3.9658 2.3319 -2.4763 36 1 2.8368 2.4083 -1.1024 37 1 2.5504 4.9518 -2.7558 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000865068328.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:25 Heat of formation + Delta-G solvation = -98.967519 kcal Electronic energy + Delta-G solvation = -22861.611910 eV Core-core repulsion = 19325.785658 eV Total energy + Delta-G solvation = -3535.826252 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 2.17 seconds Orbital eigenvalues (eV) -48.71232 -39.83196 -38.51345 -36.33815 -34.70099 -33.37069 -31.63719 -30.46784 -29.39231 -27.38554 -25.98277 -24.48185 -23.28794 -22.46624 -20.42858 -19.22597 -17.50264 -16.99635 -16.78318 -16.32485 -15.98109 -15.49461 -15.33251 -14.79355 -14.58696 -14.26002 -13.97486 -13.69967 -13.23113 -12.99994 -12.83276 -12.25156 -12.14365 -11.95845 -11.71336 -11.66361 -11.58007 -11.28677 -11.06590 -10.91605 -10.89218 -10.56119 -10.40060 -10.27384 -9.91634 -9.06036 -8.88546 -8.60019 -8.19710 -7.74210 -6.34513 -3.89030 1.22220 1.28996 3.16287 3.23416 3.27412 3.61630 3.79587 4.10609 4.37332 4.62211 4.72653 4.79066 4.94809 5.01166 5.07095 5.25165 5.31722 5.41545 5.45780 5.59667 5.73663 5.95550 6.02855 6.09688 6.13596 6.23974 6.26528 6.30746 6.42994 6.53234 6.59752 6.83593 6.97943 7.20609 7.54151 7.89872 8.10393 8.43997 9.13892 9.37887 9.90795 10.68035 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.026301 B = 0.005359 C = 0.004706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.355275 B = 5223.633994 C = 5948.119338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.084 4.084 3 H 0.104 0.896 4 C -0.102 4.102 5 C -0.073 4.073 6 C -0.136 4.136 7 C -0.101 4.101 8 C -0.160 4.160 9 C 0.100 3.900 10 F -0.135 7.135 11 C 0.109 3.891 12 H 0.106 0.894 13 O -0.543 6.543 14 C 0.418 3.582 15 O -0.586 6.586 16 N -0.438 5.438 17 C 0.108 3.892 18 C -0.311 4.311 19 H 0.100 0.900 20 C 0.033 3.967 21 N -0.878 5.878 22 Si 0.926 3.074 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.274 1.274 26 H 0.056 0.944 27 H 0.058 0.942 28 H 0.072 0.928 29 H 0.142 0.858 30 H 0.125 0.875 31 H 0.127 0.873 32 H 0.131 0.869 33 H 0.375 0.625 34 H 0.026 0.974 35 H 0.067 0.933 36 H 0.066 0.934 37 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.520 -7.866 12.627 14.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.103 4.103 3 H 0.122 0.878 4 C -0.103 4.103 5 C -0.091 4.091 6 C -0.154 4.154 7 C -0.119 4.119 8 C -0.179 4.179 9 C 0.081 3.919 10 F -0.113 7.113 11 C 0.046 3.954 12 H 0.124 0.876 13 O -0.349 6.349 14 C 0.206 3.794 15 O -0.471 6.471 16 N -0.157 5.157 17 C -0.035 4.035 18 C -0.439 4.439 19 H 0.118 0.882 20 C -0.171 4.171 21 N -0.517 5.517 22 Si 0.753 3.247 23 H -0.198 1.198 24 H -0.209 1.209 25 H -0.199 1.199 26 H 0.075 0.925 27 H 0.077 0.923 28 H 0.091 0.909 29 H 0.159 0.841 30 H 0.143 0.857 31 H 0.145 0.855 32 H 0.149 0.851 33 H 0.225 0.775 34 H 0.044 0.956 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.819 -7.986 12.313 14.789 hybrid contribution -0.325 1.194 -0.611 1.380 sum 1.493 -6.792 11.702 13.613 Atomic orbital electron populations 1.21790 0.93347 1.01883 1.03038 1.20787 0.97469 1.00956 0.91138 0.87794 1.19934 0.98742 0.95248 0.96346 1.21198 0.98460 0.92903 0.96490 1.21208 0.99093 1.00270 0.94852 1.20947 0.97895 0.93585 0.99436 1.21072 1.03353 0.96039 0.97431 1.17657 0.98956 0.79341 0.95974 1.91519 1.90757 1.34326 1.94698 1.21693 0.98499 0.83358 0.91840 0.87606 1.86471 1.26123 1.26061 1.96240 1.20610 0.85496 0.84502 0.88819 1.90516 1.37118 1.69600 1.49875 1.43620 1.30334 1.15130 1.26607 1.21630 0.90323 0.96273 0.95310 1.19638 1.35531 0.89400 0.99301 0.88207 1.25314 0.96989 0.96577 0.98225 1.70008 1.45098 1.10232 1.26389 0.86000 0.79116 0.77989 0.81622 1.19781 1.20923 1.19899 0.92504 0.92318 0.90863 0.84056 0.85669 0.85544 0.85105 0.77535 0.95572 0.91383 0.91540 0.92090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.30 8.40 37.16 0.31 -1.98 16 2 C -0.08 -1.43 2.30 -91.77 -0.21 -1.65 16 3 H 0.10 1.98 4.89 -51.93 -0.25 1.72 16 4 C -0.10 -1.51 4.79 -104.55 -0.50 -2.01 16 5 C -0.07 -0.94 8.42 -39.60 -0.33 -1.27 16 6 C -0.14 -1.47 10.04 -39.57 -0.40 -1.87 16 7 C -0.10 -1.04 10.04 -39.59 -0.40 -1.43 16 8 C -0.16 -1.91 10.03 -39.51 -0.40 -2.30 16 9 C 0.10 1.46 7.25 -39.42 -0.29 1.18 16 10 F -0.13 -2.19 16.19 2.25 0.04 -2.15 16 11 C 0.11 2.07 2.30 -27.88 -0.06 2.00 16 12 H 0.11 1.98 6.77 -51.93 -0.35 1.63 16 13 O -0.54 -9.55 10.35 -54.99 -0.57 -10.12 16 14 C 0.42 10.08 5.93 -10.99 -0.07 10.02 16 15 O -0.59 -15.96 15.97 -14.21 -0.23 -16.19 16 16 N -0.44 -11.14 3.02 -122.19 -0.37 -11.51 16 17 C 0.11 2.44 7.34 59.85 0.44 2.88 16 18 C -0.31 -8.62 9.35 -14.93 -0.14 -8.76 16 19 H 0.10 2.91 7.34 -52.49 -0.39 2.52 16 20 C 0.03 0.86 5.08 -17.46 -0.09 0.77 16 21 N -0.88 -23.15 10.61 55.50 0.59 -22.56 16 22 Si 0.93 20.68 29.58 -169.99 -5.03 15.65 16 23 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 24 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 25 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 26 H 0.06 0.77 5.97 -51.93 -0.31 0.46 16 27 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.07 1.39 7.37 -51.93 -0.38 1.01 16 29 H 0.14 1.74 5.72 -52.48 -0.30 1.44 16 30 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 31 H 0.13 0.94 8.06 -52.49 -0.42 0.51 16 32 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 33 H 0.38 5.97 6.83 45.56 0.31 6.28 16 34 H 0.03 0.50 6.02 -51.93 -0.31 0.19 16 35 H 0.07 1.61 7.16 -51.93 -0.37 1.24 16 36 H 0.07 1.56 6.59 -51.93 -0.34 1.21 16 37 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 LS Contribution 303.60 15.07 4.58 4.58 Total: -1.00 -30.69 303.60 -6.65 -37.34 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: -3.52 Total: 9.40 kcal Atomic # 6 Polarization: -2.31 SS G_CDS: -2.13 Total: -4.43 kcal Atomic # 7 Polarization: -34.28 SS G_CDS: 0.22 Total: -34.06 kcal Atomic # 8 Polarization: -25.51 SS G_CDS: -0.80 Total: -26.31 kcal Atomic # 9 Polarization: -2.19 SS G_CDS: 0.04 Total: -2.15 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.03 Total: 15.65 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -30.69 -6.65 -37.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865068328.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.627 kcal (2) G-P(sol) polarization free energy of solvation -30.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.17 seconds