Wall clock time and date at job start Tue Mar 31 2020 06:30:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.21302 * 119.99705 * 2 1 4 4 C 1.46783 * 119.99641 * 180.02562 * 2 1 3 5 5 C 1.40033 * 120.21484 * 0.26946 * 4 2 1 6 6 C 1.37869 * 119.85609 * 180.25254 * 5 4 2 7 7 F 1.35092 * 119.85861 * 179.74514 * 6 5 4 8 8 C 1.38806 * 120.28304 * 359.72997 * 6 5 4 9 9 C 1.38057 * 120.43465 * 0.02562 * 8 6 5 10 10 C 1.50700 * 119.93042 * 180.02562 * 9 8 6 11 11 N 1.46895 * 109.47474 * 259.98291 * 10 9 8 12 12 C 1.46892 * 111.00184 * 180.02562 * 11 10 9 13 13 H 1.09002 * 109.47386 * 324.99986 * 12 11 10 14 14 C 1.53006 * 109.47397 * 84.99842 * 12 11 10 15 15 C 1.50702 * 109.47401 * 204.99838 * 12 11 10 16 16 H 1.08000 * 119.99773 * 359.97438 * 15 12 11 17 17 C 1.37879 * 120.00453 * 179.97438 * 15 12 11 18 18 N 1.31512 * 119.99540 * 0.02562 * 17 15 12 19 19 Si 1.86797 * 120.00153 * 179.97438 * 17 15 12 20 20 H 1.48505 * 109.47268 * 0.02562 * 19 17 15 21 21 H 1.48508 * 109.46722 * 120.00179 * 19 17 15 22 22 H 1.48495 * 109.47556 * 240.00168 * 19 17 15 23 23 C 1.38665 * 120.13918 * 359.97438 * 9 8 6 24 24 O 1.35632 * 120.14562 * 179.97438 * 23 9 8 25 25 H 1.08994 * 109.46778 * 239.99749 * 1 2 3 26 26 H 1.09005 * 109.47026 * 359.97438 * 1 2 3 27 27 H 1.08996 * 109.47525 * 119.98852 * 1 2 3 28 28 H 1.08006 * 120.07058 * 0.02562 * 5 4 2 29 29 H 1.08001 * 119.78425 * 180.02562 * 8 6 5 30 30 H 1.09005 * 109.47220 * 19.98168 * 10 9 8 31 31 H 1.09004 * 109.47025 * 139.97883 * 10 9 8 32 32 H 1.00902 * 110.99746 * 303.95295 * 11 10 9 33 33 H 1.08997 * 109.47252 * 179.97438 * 14 12 11 34 34 H 1.08997 * 109.46529 * 300.00254 * 14 12 11 35 35 H 1.09002 * 109.46734 * 59.99746 * 14 12 11 36 36 H 0.97004 * 119.99639 * 180.02562 * 18 17 15 37 37 H 0.96700 * 114.00200 * 89.99996 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1135 1.0505 0.0000 4 6 2.2409 -1.2712 -0.0006 5 6 1.5452 -2.4865 -0.0068 6 6 2.2419 -3.6762 -0.0020 7 9 1.5708 -4.8486 -0.0028 8 6 3.6300 -3.6745 0.0033 9 6 4.3278 -2.4833 0.0044 10 6 5.8348 -2.4947 0.0096 11 7 6.3216 -2.2560 1.3748 12 6 7.7899 -2.2596 1.4183 13 1 8.1728 -2.9882 0.7037 14 6 8.3143 -0.8680 1.0584 15 6 8.2505 -2.6267 2.8055 16 1 7.5250 -2.8359 3.5776 17 6 9.5981 -2.6954 3.0889 18 7 10.4815 -2.4402 2.1487 19 14 10.1689 -3.1497 4.8085 20 1 8.9871 -3.3867 5.6760 21 1 10.9925 -4.3839 4.7467 22 1 10.9810 -2.0404 5.3698 23 6 3.6451 -1.2764 -0.0004 24 8 4.3305 -0.1060 0.0012 25 1 -0.3633 -0.5139 0.8899 26 1 -0.3633 1.0277 0.0005 27 1 -0.3634 -0.5136 -0.8900 28 1 0.4652 -2.4918 -0.0116 29 1 4.1676 -4.6111 0.0066 30 1 6.1920 -3.4636 -0.3393 31 1 6.2063 -1.7111 -0.6509 32 1 5.9513 -1.3935 1.7451 33 1 9.4038 -0.8706 1.0911 34 1 7.9811 -0.6026 0.0551 35 1 7.9314 -0.1395 1.7730 36 1 11.4296 -2.4889 2.3479 37 1 4.5334 0.2322 -0.8817 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878818213.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:01 Heat of formation + Delta-G solvation = -101.128179 kcal Electronic energy + Delta-G solvation = -21667.742530 eV Core-core repulsion = 18131.822585 eV Total energy + Delta-G solvation = -3535.919945 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 9.33 seconds Orbital eigenvalues (eV) -48.99483 -40.51976 -38.59028 -36.57427 -35.96130 -33.20718 -31.89418 -30.22899 -29.31974 -28.00795 -25.22669 -24.73540 -23.85966 -21.67881 -20.17902 -19.80296 -18.46928 -17.36494 -17.09644 -16.23807 -15.95102 -15.54682 -15.45722 -14.98759 -14.82101 -14.66183 -14.41151 -13.85363 -13.67691 -13.36713 -12.78339 -12.53357 -12.44378 -12.41323 -11.94616 -11.76885 -11.56027 -11.53672 -10.97108 -10.86803 -10.73686 -10.50992 -10.12938 -9.95834 -9.70845 -9.15970 -8.98710 -8.58681 -8.35793 -7.26849 -5.98014 -4.00951 0.37206 0.93937 2.20100 3.32771 3.33225 3.40502 3.46482 3.74243 4.04745 4.10899 4.44699 4.48619 4.75109 4.84518 5.04461 5.10496 5.13959 5.33877 5.38291 5.49930 5.61506 5.66060 5.74080 5.77773 6.02715 6.10573 6.39312 6.56113 6.70414 6.87778 7.09810 7.33578 7.35907 7.61773 7.75760 7.88645 8.26069 8.51660 8.59926 9.06456 9.64372 11.09088 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.021111 B = 0.004127 C = 0.003753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.983390 B = 6782.715691 C = 7458.253189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.393 3.607 3 O -0.438 6.438 4 C -0.180 4.180 5 C -0.104 4.104 6 C 0.076 3.924 7 F -0.138 7.138 8 C -0.090 4.090 9 C -0.077 4.077 10 C 0.101 3.899 11 N -0.676 5.676 12 C 0.211 3.789 13 H 0.033 0.967 14 C -0.167 4.167 15 C -0.494 4.494 16 H 0.063 0.937 17 C 0.055 3.945 18 N -0.898 5.898 19 Si 0.897 3.103 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.286 1.286 23 C 0.165 3.835 24 O -0.469 6.469 25 H 0.093 0.907 26 H 0.085 0.915 27 H 0.092 0.908 28 H 0.144 0.856 29 H 0.146 0.854 30 H 0.077 0.923 31 H 0.035 0.965 32 H 0.333 0.667 33 H 0.088 0.912 34 H 0.005 0.995 35 H 0.029 0.971 36 H 0.259 0.741 37 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.985 0.956 -8.553 20.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C 0.270 3.730 3 O -0.312 6.312 4 C -0.181 4.181 5 C -0.124 4.124 6 C 0.057 3.943 7 F -0.117 7.117 8 C -0.109 4.109 9 C -0.078 4.078 10 C -0.029 4.029 11 N -0.307 5.307 12 C 0.103 3.897 13 H 0.051 0.949 14 C -0.226 4.226 15 C -0.532 4.532 16 H 0.081 0.919 17 C -0.145 4.145 18 N -0.538 5.538 19 Si 0.726 3.274 20 H -0.197 1.197 21 H -0.212 1.212 22 H -0.212 1.212 23 C 0.118 3.882 24 O -0.280 6.280 25 H 0.112 0.888 26 H 0.104 0.896 27 H 0.111 0.889 28 H 0.162 0.838 29 H 0.164 0.836 30 H 0.095 0.905 31 H 0.053 0.947 32 H 0.150 0.850 33 H 0.107 0.893 34 H 0.024 0.976 35 H 0.048 0.952 36 H 0.069 0.931 37 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -18.558 0.772 -7.780 20.138 hybrid contribution 0.485 0.304 0.014 0.572 sum -18.074 1.076 -7.766 19.701 Atomic orbital electron populations 1.22253 0.93751 1.05149 1.04476 1.22196 0.91466 0.87254 0.72062 1.90601 1.71964 1.33714 1.34936 1.20681 0.93633 0.94959 1.08849 1.21169 1.00654 0.89999 1.00539 1.17467 0.90147 0.81215 1.05464 1.91509 1.80324 1.45649 1.94183 1.21244 0.91827 0.99748 0.98097 1.20342 0.97887 0.91112 0.98435 1.20785 0.87011 1.01338 0.93737 1.60953 1.12435 1.41302 1.15972 1.19210 0.80268 0.92719 0.97460 0.94863 1.22409 1.05394 0.99221 0.95624 1.21184 0.91289 1.45046 0.95723 0.91895 1.24944 0.96731 0.95631 0.97227 1.69894 1.01231 1.50188 1.32458 0.86449 0.78603 0.77885 0.84512 1.19733 1.21151 1.21193 1.18602 0.88328 0.85978 0.95316 1.84797 1.74902 1.35238 1.33061 0.88848 0.89646 0.88945 0.83807 0.83593 0.90467 0.94710 0.84960 0.89317 0.97627 0.95208 0.93139 0.74891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.36 8.93 36.01 0.32 -1.04 16 2 C 0.39 4.44 7.22 -30.85 -0.22 4.22 16 3 O -0.44 -6.47 15.89 -16.39 -0.26 -6.73 16 4 C -0.18 -2.13 5.88 -104.95 -0.62 -2.75 16 5 C -0.10 -1.06 9.44 -39.04 -0.37 -1.43 16 6 C 0.08 0.90 7.28 -39.51 -0.29 0.61 16 7 F -0.14 -1.63 17.26 2.25 0.04 -1.60 16 8 C -0.09 -1.17 9.63 -39.44 -0.38 -1.55 16 9 C -0.08 -1.11 5.40 -104.53 -0.56 -1.67 16 10 C 0.10 1.71 5.27 -4.98 -0.03 1.69 16 11 N -0.68 -14.37 6.22 -109.22 -0.68 -15.05 16 12 C 0.21 5.27 2.57 -68.86 -0.18 5.10 16 13 H 0.03 0.90 7.80 -51.93 -0.41 0.49 16 14 C -0.17 -4.04 8.94 37.16 0.33 -3.71 16 15 C -0.49 -13.75 8.84 -34.44 -0.30 -14.06 16 16 H 0.06 1.79 7.81 -52.49 -0.41 1.38 16 17 C 0.05 1.53 5.30 -17.82 -0.09 1.44 16 18 N -0.90 -25.69 11.32 55.43 0.63 -25.07 16 19 Si 0.90 21.67 29.54 -169.99 -5.02 16.65 16 20 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 22 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 23 C 0.16 2.29 6.69 -38.60 -0.26 2.03 16 24 O -0.47 -6.82 10.75 -40.52 -0.44 -7.25 16 25 H 0.09 0.51 8.09 -51.93 -0.42 0.09 16 26 H 0.08 0.57 8.12 -51.93 -0.42 0.15 16 27 H 0.09 0.44 8.08 -51.93 -0.42 0.02 16 28 H 0.14 1.00 7.05 -52.48 -0.37 0.63 16 29 H 0.15 1.78 8.03 -52.49 -0.42 1.36 16 30 H 0.08 1.29 7.91 -51.93 -0.41 0.88 16 31 H 0.03 0.58 7.14 -51.93 -0.37 0.21 16 32 H 0.33 7.17 8.40 -39.29 -0.33 6.84 16 33 H 0.09 2.37 6.07 -51.93 -0.32 2.06 16 34 H 0.00 0.10 7.45 -51.93 -0.39 -0.28 16 35 H 0.03 0.70 8.13 -51.93 -0.42 0.28 16 36 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 37 H 0.39 4.17 9.06 45.56 0.41 4.59 16 LS Contribution 321.14 15.07 4.84 4.84 Total: -1.00 -31.59 321.14 -7.36 -38.95 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: -3.83 Total: 6.37 kcal Atomic # 6 Polarization: -8.47 SS G_CDS: -2.65 Total: -11.12 kcal Atomic # 7 Polarization: -40.06 SS G_CDS: -0.05 Total: -40.12 kcal Atomic # 8 Polarization: -13.28 SS G_CDS: -0.70 Total: -13.98 kcal Atomic # 9 Polarization: -1.63 SS G_CDS: 0.04 Total: -1.60 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -31.59 -7.36 -38.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878818213.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.179 kcal (2) G-P(sol) polarization free energy of solvation -31.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 9.33 seconds