Wall clock time and date at job start Tue Mar 31 2020 05:23:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53010 * 109.46878 * 2 1 4 4 H 1.09002 * 109.46382 * 54.99740 * 3 2 1 5 5 N 1.46498 * 109.46755 * 294.99913 * 3 2 1 6 6 C 1.34784 * 119.99543 * 132.81892 * 5 3 2 7 7 O 1.21681 * 120.00099 * 359.97438 * 6 5 3 8 8 C 1.46374 * 119.99666 * 179.97438 * 6 5 3 9 9 H 1.08002 * 120.00137 * 5.65277 * 8 6 5 10 10 C 1.40045 * 119.99949 * 185.65434 * 8 6 5 11 11 N 1.30665 * 119.99954 * 354.35415 * 10 8 6 12 12 Si 1.86806 * 119.99915 * 174.35029 * 10 8 6 13 13 H 1.48503 * 109.46778 * 94.95467 * 12 10 8 14 14 H 1.48500 * 109.46843 * 214.95085 * 12 10 8 15 15 H 1.48493 * 109.47114 * 334.95083 * 12 10 8 16 16 C 1.50694 * 109.47016 * 174.99789 * 3 2 1 17 17 C 1.38174 * 120.01600 * 101.19211 * 16 3 2 18 18 C 1.38433 * 120.03093 * 179.97438 * 17 16 3 19 19 F 1.35094 * 119.96749 * 180.02562 * 18 17 16 20 20 C 1.38476 * 120.06135 * 0.02562 * 18 17 16 21 21 C 1.38132 * 120.02963 * 0.02562 * 20 18 17 22 22 C 1.38687 * 120.01542 * 280.91741 * 16 3 2 23 23 O 1.35951 * 120.03168 * 359.97438 * 22 16 3 24 24 C 1.42902 * 117.00193 * 180.02562 * 23 22 16 25 25 H 1.08998 * 109.46962 * 60.00549 * 1 2 3 26 26 H 1.09001 * 109.47389 * 299.99820 * 1 2 3 27 27 H 1.09001 * 109.46592 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46962 * 119.99451 * 2 1 3 29 29 H 1.09001 * 109.47389 * 240.00180 * 2 1 3 30 30 H 0.96993 * 120.00472 * 312.81289 * 5 3 2 31 31 H 0.96999 * 120.00290 * 180.02562 * 11 10 8 32 32 H 1.07998 * 119.98205 * 0.02562 * 17 16 3 33 33 H 1.07993 * 119.98770 * 179.97438 * 20 18 17 34 34 H 1.08003 * 120.01304 * 179.97438 * 21 20 18 35 35 H 1.09000 * 109.46995 * 299.99812 * 24 23 22 36 36 H 1.08995 * 109.46762 * 59.99384 * 24 23 22 37 37 H 1.08996 * 109.47102 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6052 1.9815 0.8418 5 7 1.6524 2.0975 -1.2518 6 6 1.0971 3.3254 -1.2261 7 8 0.9174 3.8897 -0.1632 8 6 0.7103 3.9799 -2.4769 9 1 0.7847 3.4447 -3.4120 10 6 0.2439 5.3003 -2.4611 11 7 0.0491 5.9108 -1.3224 12 14 -0.0997 6.1888 -4.0680 13 1 -1.5394 6.0579 -4.4079 14 1 0.2459 7.6257 -3.9228 15 1 0.7211 5.5892 -5.1505 16 6 3.5418 1.4445 0.1239 17 6 4.3274 1.6433 -0.9953 18 6 5.7071 1.6456 -0.8817 19 9 6.4740 1.8407 -1.9767 20 6 6.3018 1.4481 0.3531 21 6 5.5189 1.2480 1.4734 22 6 4.1360 1.2522 1.3622 23 8 3.3642 1.0625 2.4651 24 6 4.0438 0.8714 3.7076 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3634 0.5138 0.8900 27 1 -0.3632 -1.0277 -0.0005 28 1 1.8933 -0.5137 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.7954 1.6476 -2.0991 31 1 -0.2743 6.8253 -1.3114 32 1 3.8649 1.7979 -1.9588 33 1 7.3782 1.4497 0.4403 34 1 5.9830 1.0936 2.4363 35 1 4.6813 -0.0102 3.6411 36 1 4.6558 1.7467 3.9253 37 1 3.3128 0.7324 4.5040 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928777900.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:32 Heat of formation + Delta-G solvation = -103.836156 kcal Electronic energy + Delta-G solvation = -22282.453902 eV Core-core repulsion = 18746.416530 eV Total energy + Delta-G solvation = -3536.037372 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.57583 -40.17963 -37.87321 -36.77304 -34.81999 -32.43787 -31.18451 -30.69498 -29.55690 -27.25551 -26.57512 -25.17525 -22.30005 -21.97795 -20.74662 -19.40812 -18.07659 -17.30952 -16.73176 -16.65648 -15.72632 -15.32688 -15.18541 -14.61317 -14.55611 -14.32407 -14.13276 -13.96683 -13.21880 -12.92633 -12.72334 -12.62267 -12.28734 -12.06545 -11.79260 -11.59221 -11.38002 -11.15034 -11.00108 -10.88042 -10.64986 -10.47232 -10.41053 -10.36667 -10.16736 -8.83611 -8.74601 -7.83795 -7.61079 -7.55066 -6.17422 -4.61913 1.36216 1.42203 3.15310 3.22930 3.26718 3.37012 3.74838 4.12141 4.48295 4.59236 4.71112 4.78517 5.04458 5.07086 5.14229 5.25403 5.38761 5.46279 5.54271 5.59821 5.75617 5.86886 5.88961 6.09640 6.20662 6.27798 6.29425 6.39231 6.41680 6.49237 6.76368 6.83481 6.92947 7.45540 7.48454 7.93947 8.10944 8.34856 9.04807 9.54151 10.61840 10.80593 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.015998 B = 0.005655 C = 0.004882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1749.794192 B = 4950.499285 C = 5734.130476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.119 4.119 3 C 0.191 3.809 4 H 0.109 0.891 5 N -0.757 5.757 6 C 0.557 3.443 7 O -0.577 6.577 8 C -0.546 4.546 9 H 0.067 0.933 10 C 0.089 3.911 11 N -0.767 5.767 12 Si 0.905 3.095 13 H -0.273 1.273 14 H -0.279 1.279 15 H -0.264 1.264 16 C -0.079 4.079 17 C -0.099 4.099 18 C 0.058 3.942 19 F -0.145 7.145 20 C -0.127 4.127 21 C -0.185 4.185 22 C 0.121 3.879 23 O -0.305 6.305 24 C 0.027 3.973 25 H 0.062 0.938 26 H 0.053 0.947 27 H 0.044 0.956 28 H 0.065 0.935 29 H 0.057 0.943 30 H 0.379 0.621 31 H 0.268 0.732 32 H 0.145 0.855 33 H 0.131 0.869 34 H 0.133 0.867 35 H 0.052 0.948 36 H 0.054 0.946 37 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.971 -11.668 5.084 15.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.158 4.158 3 C 0.084 3.916 4 H 0.126 0.874 5 N -0.411 5.411 6 C 0.361 3.639 7 O -0.459 6.459 8 C -0.582 4.582 9 H 0.086 0.914 10 C -0.131 4.131 11 N -0.396 5.396 12 Si 0.730 3.270 13 H -0.199 1.199 14 H -0.205 1.205 15 H -0.189 1.189 16 C -0.081 4.081 17 C -0.118 4.118 18 C 0.039 3.961 19 F -0.124 7.124 20 C -0.146 4.146 21 C -0.204 4.204 22 C 0.075 3.925 23 O -0.218 6.218 24 C -0.068 4.068 25 H 0.081 0.919 26 H 0.072 0.928 27 H 0.064 0.936 28 H 0.083 0.917 29 H 0.075 0.925 30 H 0.211 0.789 31 H 0.078 0.922 32 H 0.163 0.837 33 H 0.149 0.851 34 H 0.151 0.849 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 8.570 -11.055 5.956 15.203 hybrid contribution 0.493 0.352 -1.234 1.374 sum 9.062 -10.703 4.722 14.798 Atomic orbital electron populations 1.21674 0.95235 1.00307 1.02971 1.21758 0.96587 0.95964 1.01447 1.19394 0.86871 0.93114 0.92223 0.87363 1.46194 1.68747 1.20481 1.05718 1.18218 0.76708 0.78359 0.90578 1.90597 1.58796 1.63970 1.32575 1.20867 1.46345 0.98352 0.92684 0.91438 1.25684 0.93167 0.97434 0.96819 1.70021 1.32308 1.11308 1.25914 0.86401 0.79061 0.78870 0.82696 1.19860 1.20457 1.18852 1.19892 0.98283 1.00494 0.89442 1.20908 0.90932 0.99569 1.00357 1.17571 0.88907 1.06432 0.83216 1.91462 1.75286 1.93102 1.52512 1.20770 1.00317 1.02468 0.91020 1.20956 0.92252 1.07899 0.99312 1.18824 0.89263 0.97462 0.86957 1.86163 1.34520 1.86554 1.14566 1.23044 0.98824 1.00595 0.84380 0.91872 0.92766 0.93648 0.91657 0.92461 0.78874 0.92166 0.83722 0.85060 0.84905 0.92922 0.92771 0.88281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.30 9.80 37.16 0.36 -1.94 16 2 C -0.12 -1.87 5.58 -26.73 -0.15 -2.02 16 3 C 0.19 3.71 2.14 -69.08 -0.15 3.56 16 4 H 0.11 2.51 6.74 -51.93 -0.35 2.16 16 5 N -0.76 -16.47 3.30 -56.34 -0.19 -16.66 16 6 C 0.56 15.54 7.74 -12.98 -0.10 15.44 16 7 O -0.58 -18.50 14.42 5.21 0.08 -18.42 16 8 C -0.55 -15.25 9.54 -35.63 -0.34 -15.59 16 9 H 0.07 1.73 7.85 -52.49 -0.41 1.32 16 10 C 0.09 2.48 5.50 -17.37 -0.10 2.38 16 11 N -0.77 -23.04 11.85 55.55 0.66 -22.38 16 12 Si 0.91 20.24 29.56 -169.99 -5.03 15.21 16 13 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 14 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 15 H -0.26 -5.73 7.11 56.52 0.40 -5.33 16 16 C -0.08 -1.41 5.11 -104.48 -0.53 -1.94 16 17 C -0.10 -1.72 9.31 -39.53 -0.37 -2.09 16 18 C 0.06 0.93 7.30 -39.42 -0.29 0.65 16 19 F -0.14 -2.35 17.27 2.25 0.04 -2.31 16 20 C -0.13 -1.74 10.02 -39.53 -0.40 -2.14 16 21 C -0.19 -2.48 9.04 -39.44 -0.36 -2.84 16 22 C 0.12 1.93 6.63 -39.23 -0.26 1.67 16 23 O -0.31 -4.58 9.54 -19.59 -0.19 -4.77 16 24 C 0.03 0.27 9.81 101.05 0.99 1.26 16 25 H 0.06 1.12 7.75 -51.93 -0.40 0.71 16 26 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.95 7.92 -51.93 -0.41 0.54 16 29 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.38 7.28 8.13 -40.82 -0.33 6.95 16 31 H 0.27 7.31 8.29 -40.82 -0.34 6.97 16 32 H 0.15 2.53 6.71 -52.49 -0.35 2.18 16 33 H 0.13 1.44 8.06 -52.49 -0.42 1.02 16 34 H 0.13 1.35 6.30 -52.48 -0.33 1.02 16 35 H 0.05 0.42 7.65 -51.93 -0.40 0.02 16 36 H 0.05 0.50 7.67 -51.93 -0.40 0.10 16 37 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 320.39 15.07 4.83 4.83 Total: -1.00 -34.22 320.39 -6.11 -40.33 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: -4.63 Total: 7.78 kcal Atomic # 6 Polarization: -1.92 SS G_CDS: -1.68 Total: -3.60 kcal Atomic # 7 Polarization: -39.51 SS G_CDS: 0.47 Total: -39.04 kcal Atomic # 8 Polarization: -23.08 SS G_CDS: -0.11 Total: -23.19 kcal Atomic # 9 Polarization: -2.35 SS G_CDS: 0.04 Total: -2.31 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.03 Total: 15.21 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -34.22 -6.11 -40.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928777900.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.508 kcal (2) G-P(sol) polarization free energy of solvation -34.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds