Wall clock time and date at job start Tue Mar 31 2020 06:17:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.76196 * 102.99753 * 2 1 4 4 C 1.38991 * 120.08264 * 0.02562 * 3 2 1 5 5 C 1.38065 * 119.91907 * 179.97438 * 4 3 2 6 6 C 1.38324 * 120.08029 * 0.02562 * 5 4 3 7 7 C 1.38271 * 120.16157 * 359.97438 * 6 5 4 8 8 C 1.38108 * 120.08155 * 0.02562 * 7 6 5 9 9 C 1.50706 * 120.04039 * 180.02562 * 8 7 6 10 10 H 1.09007 * 109.46514 * 144.97663 * 9 8 7 11 11 C 1.52995 * 109.46987 * 264.97739 * 9 8 7 12 12 N 1.46898 * 109.46985 * 24.97883 * 9 8 7 13 13 C 1.46901 * 110.99738 * 155.00131 * 12 9 8 14 14 C 1.52998 * 109.46978 * 179.97438 * 13 12 9 15 15 H 1.08999 * 109.47299 * 59.99559 * 14 13 12 16 16 O 1.42901 * 109.47353 * 299.99765 * 14 13 12 17 17 C 1.50699 * 109.47392 * 179.97438 * 14 13 12 18 18 H 1.08006 * 119.99578 * 359.97438 * 17 14 13 19 19 C 1.37872 * 120.00102 * 179.97438 * 17 14 13 20 20 N 1.31508 * 120.00385 * 0.02562 * 19 17 14 21 21 Si 1.86810 * 119.99884 * 180.02562 * 19 17 14 22 22 H 1.48499 * 109.46765 * 0.02562 * 21 19 17 23 23 H 1.48493 * 109.46991 * 120.00332 * 21 19 17 24 24 H 1.48498 * 109.47144 * 240.00450 * 21 19 17 25 25 H 1.08999 * 109.47084 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47639 * 299.99599 * 1 2 3 27 27 H 1.09007 * 109.47468 * 60.00136 * 1 2 3 28 28 H 1.08001 * 120.04160 * 359.95370 * 4 3 2 29 29 H 1.08005 * 119.95297 * 179.72377 * 5 4 3 30 30 H 1.07996 * 119.91729 * 179.97438 * 6 5 4 31 31 H 1.08005 * 119.96251 * 180.02562 * 7 6 5 32 32 H 1.09001 * 109.46959 * 299.99863 * 11 9 8 33 33 H 1.08992 * 109.47293 * 60.00118 * 11 9 8 34 34 H 1.09001 * 109.47180 * 180.02562 * 11 9 8 35 35 H 1.00905 * 110.99650 * 278.95238 * 12 9 8 36 36 H 1.08997 * 109.47030 * 299.99259 * 13 12 9 37 37 H 1.08999 * 109.47466 * 59.99550 * 13 12 9 38 38 H 0.96705 * 114.00037 * 300.00561 * 16 14 13 39 39 H 0.97005 * 120.00415 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7168 0.0000 4 6 1.1951 2.6662 0.0005 5 6 1.5094 4.0105 0.0011 6 6 2.8328 4.4131 0.0005 7 6 3.8454 3.4715 0.0000 8 6 3.5385 2.1250 -0.0005 9 6 4.6429 1.0995 -0.0005 10 1 4.3362 0.2354 0.5889 11 6 4.9311 0.6604 -1.4375 12 7 5.8558 1.6861 0.5849 13 6 6.7270 0.6443 1.1448 14 6 7.9771 1.2922 1.7433 15 1 7.6849 1.9846 2.5328 16 8 8.6803 2.0032 0.7225 17 6 8.8706 0.2235 2.3183 18 1 8.5760 -0.8141 2.2627 19 6 10.0640 0.5704 2.9152 20 7 10.4225 1.8338 2.9833 21 14 11.1719 -0.7545 3.6273 22 1 10.5457 -2.0855 3.4236 23 1 12.4896 -0.7180 2.9436 24 1 11.3613 -0.5132 5.0802 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 0.1616 2.3526 0.0002 29 1 0.7210 4.7487 -0.0030 30 1 3.0757 5.4654 0.0005 31 1 4.8776 3.7894 0.0000 32 1 4.0311 0.2252 -1.8718 33 1 5.2377 1.5245 -2.0269 34 1 5.7296 -0.0816 -1.4375 35 1 6.3508 2.2453 -0.0937 36 1 6.1905 0.1017 1.9232 37 1 7.0195 -0.0479 0.3552 38 1 8.9713 1.4484 -0.0141 39 1 11.2624 2.0778 3.4029 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930332066.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:37 Heat of formation + Delta-G solvation = -31.574890 kcal Electronic energy + Delta-G solvation = -19597.221221 eV Core-core repulsion = 16630.530509 eV Total energy + Delta-G solvation = -2966.690712 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = -0.05 seconds Orbital eigenvalues (eV) -39.39088 -36.90749 -35.06387 -32.10439 -31.43377 -31.24809 -29.04236 -28.96585 -27.32374 -24.41621 -23.23548 -22.63465 -20.49090 -20.33786 -17.62002 -16.94091 -16.18589 -15.51003 -15.05615 -14.58598 -14.53944 -14.27628 -14.12660 -14.06699 -13.72421 -13.57810 -13.24149 -12.84129 -12.60464 -12.49061 -12.23433 -11.97084 -11.51956 -11.12635 -11.08504 -11.03866 -10.88240 -10.76211 -10.70778 -10.11352 -10.04852 -9.68232 -9.00746 -8.71096 -8.55121 -8.16389 -7.78482 -7.40639 -5.98218 -4.16241 1.26614 1.43229 1.46472 2.34631 3.28531 3.36731 3.40188 3.75743 4.37882 4.61432 4.83237 4.83703 4.84442 4.97831 5.11874 5.29064 5.32241 5.40647 5.43894 5.46891 5.57303 5.81571 5.85395 5.96308 6.10072 6.19776 6.23157 6.28586 6.40317 6.45881 6.56866 6.65326 6.92177 6.98593 7.56131 7.79234 7.87430 8.02124 8.25562 8.87528 9.40090 9.60769 11.06089 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.025068 B = 0.003819 C = 0.003520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.687473 B = 7329.767332 C = 7952.461298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 S -0.112 6.112 3 C -0.088 4.088 4 C -0.137 4.137 5 C -0.112 4.112 6 C -0.125 4.125 7 C -0.077 4.077 8 C -0.041 4.041 9 C 0.117 3.883 10 H 0.088 0.912 11 C -0.175 4.175 12 N -0.678 5.678 13 C 0.037 3.963 14 C 0.232 3.768 15 H 0.064 0.936 16 O -0.565 6.565 17 C -0.572 4.572 18 H 0.055 0.945 19 C 0.080 3.920 20 N -0.858 5.858 21 Si 0.888 3.112 22 H -0.273 1.273 23 H -0.283 1.283 24 H -0.283 1.283 25 H 0.105 0.895 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.119 0.881 29 H 0.120 0.880 30 H 0.122 0.878 31 H 0.136 0.864 32 H 0.062 0.938 33 H 0.056 0.944 34 H 0.061 0.939 35 H 0.344 0.656 36 H 0.065 0.935 37 H 0.019 0.981 38 H 0.340 0.660 39 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.350 0.291 -8.740 21.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.319 4.319 2 S 0.130 5.870 3 C -0.201 4.201 4 C -0.161 4.161 5 C -0.132 4.132 6 C -0.146 4.146 7 C -0.097 4.097 8 C -0.047 4.047 9 C 0.006 3.994 10 H 0.106 0.894 11 C -0.234 4.234 12 N -0.309 5.309 13 C -0.092 4.092 14 C 0.174 3.826 15 H 0.081 0.919 16 O -0.367 6.367 17 C -0.610 4.610 18 H 0.073 0.927 19 C -0.126 4.126 20 N -0.494 5.494 21 Si 0.716 3.284 22 H -0.197 1.197 23 H -0.209 1.209 24 H -0.209 1.209 25 H 0.123 0.877 26 H 0.100 0.900 27 H 0.100 0.900 28 H 0.137 0.863 29 H 0.138 0.862 30 H 0.140 0.860 31 H 0.154 0.846 32 H 0.081 0.919 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.163 0.837 36 H 0.083 0.917 37 H 0.037 0.963 38 H 0.184 0.816 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -18.999 -0.002 -7.649 20.481 hybrid contribution 0.156 -0.497 -0.602 0.796 sum -18.844 -0.499 -8.251 20.577 Atomic orbital electron populations 1.23691 0.96100 1.06759 1.05353 1.85594 1.05071 1.03705 1.92610 1.21536 0.96081 0.96168 1.06320 1.21009 0.97642 0.93272 1.04189 1.20957 0.96621 0.95043 1.00578 1.21215 0.92733 0.99692 1.00934 1.21063 1.00131 0.91646 0.96877 1.19595 0.91500 0.95038 0.98562 1.20442 0.90247 0.94453 0.94281 0.89432 1.22436 1.02160 1.01735 0.97051 1.60586 1.07314 1.24194 1.38813 1.22874 0.95915 0.92679 0.97718 1.19425 0.85078 0.91670 0.86420 0.91863 1.86589 1.77161 1.39234 1.33706 1.21670 1.05385 0.93624 1.40345 0.92651 1.25027 0.97743 0.95098 0.94782 1.70092 1.21997 1.15777 1.41531 0.86628 0.80655 0.82240 0.78921 1.19729 1.20933 1.20863 0.87677 0.89959 0.90032 0.86348 0.86237 0.85960 0.84605 0.91873 0.92461 0.92031 0.83668 0.91692 0.96274 0.81646 0.93083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.15 101.05 0.92 -0.26 16 2 S -0.11 -1.33 20.47 -107.50 -2.20 -3.53 16 3 C -0.09 -1.18 6.11 -39.04 -0.24 -1.42 16 4 C -0.14 -1.60 9.36 -39.37 -0.37 -1.97 16 5 C -0.11 -1.25 10.04 -39.61 -0.40 -1.65 16 6 C -0.13 -1.52 10.04 -39.54 -0.40 -1.92 16 7 C -0.08 -1.10 9.32 -39.62 -0.37 -1.47 16 8 C -0.04 -0.60 5.08 -104.40 -0.53 -1.13 16 9 C 0.12 1.81 2.26 -68.87 -0.16 1.66 16 10 H 0.09 1.45 6.67 -51.93 -0.35 1.11 16 11 C -0.17 -2.40 9.14 37.16 0.34 -2.06 16 12 N -0.68 -12.18 5.25 -107.95 -0.57 -12.75 16 13 C 0.04 0.76 5.13 -3.82 -0.02 0.74 16 14 C 0.23 5.87 3.10 -27.88 -0.09 5.78 16 15 H 0.06 1.81 8.14 -51.93 -0.42 1.39 16 16 O -0.56 -14.20 12.07 -35.23 -0.43 -14.63 16 17 C -0.57 -15.77 8.76 -34.44 -0.30 -16.07 16 18 H 0.06 1.50 7.74 -52.48 -0.41 1.09 16 19 C 0.08 2.24 5.40 -17.82 -0.10 2.15 16 20 N -0.86 -25.53 12.84 55.43 0.71 -24.82 16 21 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 22 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 23 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 24 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 25 H 0.10 0.66 8.14 -51.92 -0.42 0.24 16 26 H 0.08 0.60 7.75 -51.93 -0.40 0.20 16 27 H 0.08 0.56 7.75 -51.92 -0.40 0.16 16 28 H 0.12 1.10 5.88 -52.49 -0.31 0.79 16 29 H 0.12 1.01 8.06 -52.48 -0.42 0.59 16 30 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 31 H 0.14 1.97 6.89 -52.48 -0.36 1.61 16 32 H 0.06 0.81 7.73 -51.93 -0.40 0.41 16 33 H 0.06 0.75 8.13 -51.93 -0.42 0.33 16 34 H 0.06 0.86 7.45 -51.93 -0.39 0.48 16 35 H 0.34 6.09 7.29 -39.29 -0.29 5.80 16 36 H 0.06 1.38 8.05 -51.93 -0.42 0.96 16 37 H 0.02 0.38 7.44 -51.93 -0.39 0.00 16 38 H 0.34 7.60 9.04 45.56 0.41 8.01 16 39 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 332.91 15.07 5.02 5.02 Total: -1.00 -30.71 332.91 -9.13 -39.83 By element: Atomic # 1 Polarization: 17.19 SS G_CDS: -4.94 Total: 12.25 kcal Atomic # 6 Polarization: -15.92 SS G_CDS: -1.70 Total: -17.62 kcal Atomic # 7 Polarization: -37.72 SS G_CDS: 0.14 Total: -37.57 kcal Atomic # 8 Polarization: -14.20 SS G_CDS: -0.43 Total: -14.63 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: -1.33 SS G_CDS: -2.20 Total: -3.53 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.71 -9.13 -39.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930332066.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.256 kcal (2) G-P(sol) polarization free energy of solvation -30.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.05 seconds