Wall clock time and date at job start Tue Mar 31 2020 06:38:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47039 * 2 1 4 4 C 1.50701 * 109.46874 * 119.99521 * 2 1 3 5 5 H 1.08002 * 120.00065 * 120.00630 * 4 2 1 6 6 C 1.37877 * 120.00424 * 299.99972 * 4 2 1 7 7 N 1.31523 * 119.99562 * 0.02562 * 6 4 2 8 8 Si 1.86792 * 120.00467 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.47097 * 0.02562 * 8 6 4 10 10 H 1.48496 * 109.47272 * 120.00184 * 8 6 4 11 11 H 1.48502 * 109.47296 * 240.00565 * 8 6 4 12 12 N 1.46503 * 109.47534 * 239.99607 * 2 1 3 13 13 C 1.34775 * 119.99941 * 84.99946 * 12 2 1 14 14 O 1.21281 * 119.99926 * 0.02562 * 13 12 2 15 15 C 1.50691 * 120.00023 * 180.02562 * 13 12 2 16 16 C 1.53005 * 109.47148 * 84.72209 * 15 13 12 17 17 O 1.42902 * 109.47423 * 324.72108 * 15 13 12 18 18 C 1.50707 * 109.47128 * 204.71909 * 15 13 12 19 19 C 1.38252 * 119.97030 * 112.43139 * 18 15 13 20 20 C 1.38195 * 120.02387 * 179.97438 * 19 18 15 21 21 C 1.38462 * 119.97535 * 359.97333 * 20 19 18 22 22 F 1.35095 * 120.02718 * 180.02562 * 21 20 19 23 23 C 1.38462 * 119.94690 * 0.02688 * 21 20 19 24 24 C 1.38203 * 119.97468 * 359.97438 * 23 21 20 25 25 H 1.08993 * 109.47537 * 300.00175 * 1 2 3 26 26 H 1.09001 * 109.46773 * 60.00605 * 1 2 3 27 27 H 1.09004 * 109.47039 * 179.97438 * 1 2 3 28 28 H 0.96998 * 119.99260 * 179.97438 * 7 6 4 29 29 H 0.96999 * 119.99797 * 265.00303 * 12 2 1 30 30 H 1.09001 * 109.46746 * 179.97438 * 16 15 13 31 31 H 1.08992 * 109.46988 * 299.99799 * 16 15 13 32 32 H 1.08999 * 109.46969 * 60.00220 * 16 15 13 33 33 H 0.96701 * 113.99591 * 299.99845 * 17 15 13 34 34 H 1.08002 * 119.98553 * 359.70261 * 19 18 15 35 35 H 1.08001 * 120.01679 * 179.97438 * 20 19 18 36 36 H 1.08002 * 120.01349 * 179.97438 * 23 21 20 37 37 H 1.08002 * 119.98141 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1316 6 6 1.6992 -0.2392 2.4828 7 7 0.9427 0.8299 2.6034 8 14 2.3224 -1.1192 4.0081 9 1 3.1483 -2.2854 3.6040 10 1 3.1470 -0.1854 4.8161 11 1 1.1676 -1.5863 4.8166 12 7 2.0184 -0.6907 -1.1961 13 6 2.1472 -0.0184 -2.3571 14 8 1.8591 1.1584 -2.4115 15 6 2.6490 -0.7290 -3.5876 16 6 1.4805 -1.4285 -4.2848 17 8 3.6288 -1.6988 -3.2113 18 6 3.2687 0.2723 -4.5282 19 6 4.6302 0.2451 -4.7668 20 6 5.1995 1.1623 -5.6296 21 6 4.4056 2.1084 -6.2556 22 9 4.9610 3.0053 -7.0996 23 6 3.0422 2.1346 -6.0159 24 6 2.4751 1.2164 -5.1526 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 0.7081 1.1610 3.4844 29 1 2.2491 -1.6318 -1.1525 30 1 1.8435 -1.9420 -5.1751 31 1 1.0324 -2.1526 -3.6046 32 1 0.7332 -0.6887 -4.5719 33 1 4.3999 -1.3254 -2.7631 34 1 5.2497 -0.4905 -4.2754 35 1 6.2631 1.1412 -5.8156 36 1 2.4221 2.8724 -6.5032 37 1 1.4116 1.2365 -4.9658 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931155864.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:30 Heat of formation + Delta-G solvation = -131.841223 kcal Electronic energy + Delta-G solvation = -22047.954367 eV Core-core repulsion = 18510.702604 eV Total energy + Delta-G solvation = -3537.251763 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.92777 -41.63070 -39.64431 -37.72173 -36.73337 -34.25845 -33.25457 -31.98782 -30.98648 -29.87965 -27.34324 -25.62585 -23.99253 -23.69761 -22.10354 -20.99614 -19.68654 -18.93526 -18.18503 -17.60201 -17.32646 -16.95909 -16.61029 -16.36359 -16.01662 -15.58645 -15.13935 -14.73543 -14.62341 -14.38464 -14.12139 -13.92144 -13.72338 -13.38485 -13.32179 -13.15194 -12.96235 -12.86529 -12.77125 -12.70808 -12.28183 -12.10956 -11.99290 -11.80455 -11.09741 -10.63932 -10.44974 -10.05482 -9.76809 -9.60749 -8.17869 -6.35169 0.05253 0.27196 1.44613 1.46163 1.57841 1.66274 2.25348 2.44375 2.73533 3.06343 3.13057 3.24218 3.47139 3.72963 3.88278 3.93715 4.08118 4.31479 4.45473 4.69210 4.73088 4.79268 4.91290 4.92396 4.95378 5.08819 5.09795 5.12684 5.23520 5.42194 5.46718 5.60297 5.67646 5.86621 5.88247 6.09608 6.44245 6.72816 6.94422 7.31441 7.49642 8.88418 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.026962 B = 0.003996 C = 0.003971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.249127 B = 7006.005325 C = 7049.608721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.270 3.730 3 H -0.001 1.001 4 C -0.545 4.545 5 H 0.074 0.926 6 C 0.015 3.985 7 N -0.918 5.918 8 Si 0.971 3.029 9 H -0.259 1.259 10 H -0.284 1.284 11 H -0.280 1.280 12 N -0.692 5.692 13 C 0.476 3.524 14 O -0.582 6.582 15 C 0.176 3.824 16 C -0.133 4.133 17 O -0.539 6.539 18 C -0.124 4.124 19 C -0.081 4.081 20 C -0.154 4.154 21 C 0.084 3.916 22 F -0.146 7.146 23 C -0.162 4.162 24 C -0.062 4.062 25 H 0.066 0.934 26 H 0.014 0.986 27 H 0.040 0.960 28 H 0.265 0.735 29 H 0.407 0.593 30 H 0.095 0.905 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.393 0.607 34 H 0.161 0.839 35 H 0.160 0.840 36 H 0.149 0.851 37 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.108 -4.819 -15.815 17.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.166 3.834 3 H 0.017 0.983 4 C -0.583 4.583 5 H 0.092 0.908 6 C -0.185 4.185 7 N -0.556 5.556 8 Si 0.796 3.204 9 H -0.183 1.183 10 H -0.210 1.210 11 H -0.205 1.205 12 N -0.341 5.341 13 C 0.261 3.739 14 O -0.463 6.463 15 C 0.131 3.869 16 C -0.190 4.190 17 O -0.347 6.347 18 C -0.125 4.125 19 C -0.098 4.098 20 C -0.173 4.173 21 C 0.065 3.935 22 F -0.124 7.124 23 C -0.181 4.181 24 C -0.080 4.080 25 H 0.084 0.916 26 H 0.033 0.967 27 H 0.059 0.941 28 H 0.074 0.926 29 H 0.242 0.758 30 H 0.114 0.886 31 H 0.093 0.907 32 H 0.097 0.903 33 H 0.244 0.756 34 H 0.178 0.822 35 H 0.177 0.823 36 H 0.166 0.834 37 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 5.421 -4.259 -15.993 17.415 hybrid contribution 0.503 0.386 1.189 1.348 sum 5.924 -3.873 -14.803 16.408 Atomic orbital electron populations 1.21894 0.98248 0.99472 0.99640 1.18373 0.91169 0.91888 0.81926 0.98299 1.21573 1.32503 1.13498 0.90748 0.90830 1.25782 0.94868 0.95546 1.02297 1.70061 1.37039 1.23984 1.24525 0.85307 0.78089 0.78554 0.78451 1.18282 1.21036 1.20537 1.46266 1.64051 1.14409 1.09393 1.21782 0.78767 0.87297 0.86088 1.90665 1.52660 1.17604 1.85354 1.20017 0.90590 0.87259 0.88985 1.21807 0.94547 1.01115 1.01580 1.86554 1.33467 1.34712 1.79984 1.20219 0.95064 0.98099 0.99110 1.21071 0.93606 0.98287 0.96865 1.21330 1.01582 0.95478 0.98894 1.17956 0.92181 0.90448 0.92951 1.91473 1.85847 1.66229 1.68900 1.21292 0.93687 1.01645 1.01450 1.20896 1.00748 0.92876 0.93525 0.91562 0.96723 0.94110 0.92592 0.75759 0.88645 0.90668 0.90322 0.75637 0.82164 0.82259 0.83351 0.85122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.65 9.26 71.98 0.67 -5.98 16 2 C 0.27 13.66 2.56 44.24 0.11 13.77 16 3 H 0.00 -0.05 7.58 -2.39 -0.02 -0.07 16 4 C -0.55 -28.25 8.73 25.60 0.22 -28.03 16 5 H 0.07 3.57 7.74 -2.91 -0.02 3.54 16 6 C 0.02 0.80 5.30 84.65 0.45 1.25 16 7 N -0.92 -52.00 11.32 21.45 0.24 -51.75 16 8 Si 0.97 41.34 29.54 68.60 2.03 43.37 16 9 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 10 H -0.28 -12.10 7.11 99.48 0.71 -11.40 16 11 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 12 N -0.69 -27.63 4.98 -446.10 -2.22 -29.86 16 13 C 0.48 17.83 6.65 87.65 0.58 18.42 16 14 O -0.58 -26.71 14.87 -3.03 -0.05 -26.75 16 15 C 0.18 4.72 1.15 -12.28 -0.01 4.71 16 16 C -0.13 -3.03 8.55 71.98 0.62 -2.41 16 17 O -0.54 -12.17 11.52 -148.98 -1.72 -13.89 16 18 C -0.12 -3.22 4.56 -19.86 -0.09 -3.31 16 19 C -0.08 -1.74 9.24 22.26 0.21 -1.53 16 20 C -0.15 -3.25 10.03 22.31 0.22 -3.02 16 21 C 0.08 2.02 7.30 22.38 0.16 2.18 16 22 F -0.15 -3.57 17.27 44.97 0.78 -2.79 16 23 C -0.16 -3.98 10.03 22.31 0.22 -3.76 16 24 C -0.06 -1.67 8.00 22.26 0.18 -1.49 16 25 H 0.07 3.63 6.07 -2.39 -0.01 3.61 16 26 H 0.01 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 28 H 0.26 14.19 8.31 -92.71 -0.77 13.42 16 29 H 0.41 14.17 7.98 -92.71 -0.74 13.43 16 30 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.07 1.69 8.14 -2.39 -0.02 1.68 16 32 H 0.08 1.76 7.00 -2.39 -0.02 1.75 16 33 H 0.39 7.08 7.74 -74.06 -0.57 6.51 16 34 H 0.16 2.53 6.43 -2.91 -0.02 2.51 16 35 H 0.16 2.48 8.06 -2.91 -0.02 2.45 16 36 H 0.15 3.07 8.06 -2.91 -0.02 3.05 16 37 H 0.13 3.53 6.97 -2.91 -0.02 3.51 16 Total: -1.00 -65.72 316.66 2.40 -63.32 By element: Atomic # 1 Polarization: 27.76 SS G_CDS: -0.20 Total: 27.56 kcal Atomic # 6 Polarization: -12.75 SS G_CDS: 3.54 Total: -9.21 kcal Atomic # 7 Polarization: -79.63 SS G_CDS: -1.98 Total: -81.61 kcal Atomic # 8 Polarization: -38.88 SS G_CDS: -1.76 Total: -40.65 kcal Atomic # 9 Polarization: -3.57 SS G_CDS: 0.78 Total: -2.79 kcal Atomic # 14 Polarization: 41.34 SS G_CDS: 2.03 Total: 43.37 kcal Total: -65.72 2.40 -63.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931155864.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.521 kcal (2) G-P(sol) polarization free energy of solvation -65.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds