Wall clock time and date at job start Tue Mar 31 2020 06:38:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08992 * 109.47601 * 2 1 4 4 C 1.50706 * 109.46891 * 120.00566 * 2 1 3 5 5 H 1.07998 * 120.00076 * 119.99795 * 4 2 1 6 6 C 1.37874 * 119.99458 * 299.99643 * 4 2 1 7 7 N 1.31516 * 120.00595 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 119.99603 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47239 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.46970 * 119.99731 * 8 6 4 11 11 H 1.48492 * 109.47172 * 239.99690 * 8 6 4 12 12 N 1.46498 * 109.46861 * 239.99997 * 2 1 3 13 13 C 1.34774 * 120.00084 * 85.00377 * 12 2 1 14 14 O 1.21278 * 119.99881 * 359.97438 * 13 12 2 15 15 C 1.50701 * 120.00437 * 179.97438 * 13 12 2 16 16 C 1.52996 * 109.47144 * 274.92188 * 15 13 12 17 17 O 1.42907 * 109.46967 * 34.91831 * 15 13 12 18 18 C 1.50693 * 109.47450 * 154.91800 * 15 13 12 19 19 C 1.38245 * 119.97666 * 67.73779 * 18 15 13 20 20 C 1.38195 * 120.02832 * 179.97438 * 19 18 15 21 21 C 1.38461 * 119.97383 * 0.02562 * 20 19 18 22 22 F 1.35105 * 120.02548 * 179.97438 * 21 20 19 23 23 C 1.38463 * 119.94945 * 0.25503 * 21 20 19 24 24 C 1.38198 * 119.96941 * 359.47092 * 23 21 20 25 25 H 1.08997 * 109.46797 * 59.99649 * 1 2 3 26 26 H 1.09000 * 109.47439 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.46937 * 300.00109 * 1 2 3 28 28 H 0.96995 * 120.00154 * 180.02562 * 7 6 4 29 29 H 0.97000 * 120.00224 * 264.99886 * 12 2 1 30 30 H 1.09005 * 109.46818 * 299.99459 * 16 15 13 31 31 H 1.09001 * 109.47650 * 59.99421 * 16 15 13 32 32 H 1.09003 * 109.47407 * 180.02562 * 16 15 13 33 33 H 0.96692 * 114.00151 * 59.99781 * 17 15 13 34 34 H 1.07999 * 119.98665 * 359.97438 * 19 18 15 35 35 H 1.08000 * 120.01521 * 180.02562 * 20 19 18 36 36 H 1.08000 * 120.01030 * 179.72352 * 23 21 20 37 37 H 1.07999 * 119.98749 * 180.27783 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0324 -0.7106 1.2305 5 1 2.6532 -1.5887 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3224 -1.1198 4.0079 9 1 3.1483 -2.2860 3.6037 10 1 3.1473 -0.1861 4.8160 11 1 1.1677 -1.5868 4.8164 12 7 2.0183 -0.6906 -1.1962 13 6 2.1471 -0.0183 -2.3571 14 8 1.8583 1.1584 -2.4116 15 6 2.6499 -0.7285 -3.5875 16 6 4.1799 -0.7263 -3.5882 17 8 2.1755 -2.0765 -3.5867 18 6 2.1460 -0.0195 -4.8180 19 6 2.6047 1.2490 -5.1209 20 6 2.1437 1.9000 -6.2494 21 6 1.2216 1.2815 -7.0766 22 9 0.7698 1.9172 -8.1798 23 6 0.7584 0.0134 -6.7692 24 6 1.2252 -0.6379 -5.6432 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 0.7096 1.1617 3.4844 29 1 2.2490 -1.6318 -1.1527 30 1 4.5417 0.3020 -3.5889 31 1 4.5444 -1.2391 -2.6981 32 1 4.5436 -1.2396 -4.4784 33 1 1.2117 -2.1543 -3.5861 34 1 3.3237 1.7314 -4.4753 35 1 2.5026 2.8908 -6.4860 36 1 0.0358 -0.4681 -7.4113 37 1 0.8674 -1.6288 -5.4055 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931155865.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:35 Heat of formation + Delta-G solvation = -111.108547 kcal Electronic energy + Delta-G solvation = -22052.208249 eV Core-core repulsion = 18515.855523 eV Total energy + Delta-G solvation = -3536.352726 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 1.72 seconds Orbital eigenvalues (eV) -48.94242 -40.39392 -38.36164 -36.57501 -34.90296 -32.37086 -32.20046 -31.03702 -29.41739 -28.56125 -25.31488 -24.42853 -23.01134 -22.33510 -20.57509 -19.48796 -18.39657 -17.77726 -16.92485 -16.34239 -15.84142 -15.61930 -15.26582 -14.77174 -14.71132 -14.49145 -13.70567 -13.53057 -13.38196 -13.12227 -12.84047 -12.50529 -12.35836 -12.33078 -12.06230 -11.74847 -11.64066 -11.13148 -11.05050 -11.00404 -10.81093 -10.70400 -10.33583 -10.27948 -9.17508 -9.08943 -8.96903 -8.60412 -8.54494 -7.98757 -6.16151 -4.25618 1.05170 1.21519 3.14680 3.21634 3.29592 3.32302 3.45308 3.94729 4.10226 4.21095 4.33301 4.54638 4.66893 4.82267 5.09095 5.16320 5.25307 5.30666 5.40538 5.67473 5.75283 5.83801 5.92034 6.05704 6.07547 6.21587 6.44311 6.75670 6.82075 6.89726 7.08673 7.31843 7.37825 7.53664 7.65804 7.85979 8.09729 8.58621 8.72137 9.01653 9.42073 10.89800 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.032810 B = 0.003939 C = 0.003792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.195711 B = 7106.210162 C = 7382.879680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.263 3.737 3 H 0.049 0.951 4 C -0.534 4.534 5 H 0.063 0.937 6 C 0.066 3.934 7 N -0.883 5.883 8 Si 0.902 3.098 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.695 5.695 13 C 0.478 3.522 14 O -0.543 6.543 15 C 0.158 3.842 16 C -0.133 4.133 17 O -0.545 6.545 18 C -0.107 4.107 19 C -0.048 4.048 20 C -0.156 4.156 21 C 0.095 3.905 22 F -0.144 7.144 23 C -0.157 4.157 24 C -0.082 4.082 25 H 0.013 0.987 26 H 0.027 0.973 27 H 0.091 0.909 28 H 0.264 0.736 29 H 0.395 0.605 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.381 0.619 34 H 0.137 0.863 35 H 0.135 0.865 36 H 0.134 0.866 37 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.481 -3.594 -15.832 16.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.161 3.839 3 H 0.066 0.934 4 C -0.572 4.572 5 H 0.081 0.919 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.729 3.271 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.343 5.343 13 C 0.261 3.739 14 O -0.421 6.421 15 C 0.114 3.886 16 C -0.190 4.190 17 O -0.351 6.351 18 C -0.108 4.108 19 C -0.066 4.066 20 C -0.174 4.174 21 C 0.076 3.924 22 F -0.122 7.122 23 C -0.176 4.176 24 C -0.100 4.100 25 H 0.033 0.967 26 H 0.046 0.954 27 H 0.109 0.891 28 H 0.074 0.926 29 H 0.228 0.772 30 H 0.096 0.904 31 H 0.094 0.906 32 H 0.091 0.909 33 H 0.230 0.770 34 H 0.154 0.846 35 H 0.153 0.847 36 H 0.152 0.848 37 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 2.799 -2.734 -15.718 16.198 hybrid contribution -0.417 -0.581 0.723 1.017 sum 2.382 -3.315 -14.995 15.541 Atomic orbital electron populations 1.22076 0.98387 0.99140 1.00927 1.18798 0.91071 0.93998 0.80008 0.93359 1.21251 1.32460 1.13256 0.90234 0.91933 1.24890 0.94770 0.94934 0.99094 1.69908 1.35916 1.22445 1.23832 0.86388 0.78635 0.79551 0.82507 1.19672 1.20865 1.20856 1.46528 1.63746 1.13992 1.10047 1.20860 0.79651 0.88004 0.85408 1.90684 1.50644 1.15846 1.84974 1.20275 0.96489 0.81572 0.90301 1.21750 0.89952 1.03402 1.03905 1.86558 1.27374 1.24429 1.96758 1.20138 0.98443 0.95675 0.96517 1.20843 0.98244 0.93097 0.94436 1.21124 0.99125 1.01315 0.95874 1.17749 0.97379 0.92147 0.85152 1.91482 1.87924 1.81848 1.50971 1.21017 1.02759 0.94209 0.99595 1.20765 0.95727 0.99930 0.93559 0.96746 0.95407 0.89078 0.92598 0.77204 0.90351 0.90594 0.90851 0.77027 0.84560 0.84689 0.84794 0.84745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.58 9.26 37.16 0.34 -3.23 16 2 C 0.26 6.53 2.56 -69.08 -0.18 6.35 16 3 H 0.05 1.39 7.58 -51.93 -0.39 0.99 16 4 C -0.53 -13.90 8.73 -34.44 -0.30 -14.20 16 5 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 6 C 0.07 1.76 5.30 -17.82 -0.09 1.66 16 7 N -0.88 -24.57 11.32 55.43 0.63 -23.94 16 8 Si 0.90 20.37 29.54 -169.99 -5.02 15.35 16 9 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 10 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 11 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 12 N -0.70 -13.98 4.98 -54.93 -0.27 -14.25 16 13 C 0.48 9.02 6.65 -10.99 -0.07 8.94 16 14 O -0.54 -12.18 14.88 5.56 0.08 -12.10 16 15 C 0.16 2.24 1.16 -92.93 -0.11 2.14 16 16 C -0.13 -1.66 8.55 37.16 0.32 -1.34 16 17 O -0.54 -6.79 11.51 -35.23 -0.41 -7.20 16 18 C -0.11 -1.46 4.56 -104.62 -0.48 -1.93 16 19 C -0.05 -0.66 8.01 -39.59 -0.32 -0.97 16 20 C -0.16 -1.96 10.03 -39.51 -0.40 -2.36 16 21 C 0.09 1.20 7.30 -39.42 -0.29 0.92 16 22 F -0.14 -1.84 17.27 2.25 0.04 -1.80 16 23 C -0.16 -1.82 10.03 -39.51 -0.40 -2.21 16 24 C -0.08 -0.97 9.24 -39.59 -0.37 -1.33 16 25 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 26 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.09 2.43 6.07 -51.93 -0.32 2.11 16 28 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 29 H 0.39 7.13 7.97 -40.82 -0.33 6.81 16 30 H 0.08 0.94 7.00 -51.93 -0.36 0.58 16 31 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.38 3.83 7.74 45.56 0.35 4.19 16 34 H 0.14 1.83 6.97 -52.49 -0.37 1.47 16 35 H 0.14 1.43 8.06 -52.49 -0.42 1.01 16 36 H 0.13 1.24 8.06 -52.49 -0.42 0.81 16 37 H 0.13 1.26 6.43 -52.49 -0.34 0.93 16 LS Contribution 316.65 15.07 4.77 4.77 Total: -1.00 -30.29 316.65 -6.34 -36.63 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: -3.83 Total: 10.11 kcal Atomic # 6 Polarization: -5.24 SS G_CDS: -2.33 Total: -7.57 kcal Atomic # 7 Polarization: -38.54 SS G_CDS: 0.35 Total: -38.19 kcal Atomic # 8 Polarization: -18.97 SS G_CDS: -0.32 Total: -19.29 kcal Atomic # 9 Polarization: -1.84 SS G_CDS: 0.04 Total: -1.80 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -30.29 -6.34 -36.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931155865.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.483 kcal (2) G-P(sol) polarization free energy of solvation -30.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.72 seconds