Wall clock time and date at job start Tue Mar 31 2020 05:27:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52993 * 109.47113 * 2 1 4 4 H 1.09001 * 109.47107 * 55.00645 * 3 2 1 5 5 C 1.50709 * 109.46864 * 175.00176 * 3 2 1 6 6 H 1.07997 * 119.99805 * 120.00412 * 5 3 2 7 7 C 1.37875 * 119.99782 * 300.00186 * 5 3 2 8 8 N 1.31519 * 120.00215 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 119.99952 * 180.02562 * 7 5 3 10 10 H 1.48495 * 109.47357 * 59.99562 * 9 7 5 11 11 H 1.48494 * 109.47273 * 180.02562 * 9 7 5 12 12 H 1.48508 * 109.46811 * 299.99913 * 9 7 5 13 13 O 1.45197 * 109.47750 * 295.00172 * 3 2 1 14 14 C 1.34231 * 116.99902 * 89.99618 * 13 3 2 15 15 O 1.20821 * 119.99945 * 0.02562 * 14 13 3 16 16 C 1.50703 * 119.99639 * 180.02562 * 14 13 3 17 17 N 1.46503 * 109.46690 * 180.02562 * 16 14 13 18 18 C 1.34707 * 126.51711 * 124.99891 * 17 16 14 19 19 C 1.37992 * 106.64967 * 180.02562 * 18 17 16 20 20 C 1.46768 * 125.91596 * 180.02562 * 19 18 17 21 21 C 1.50699 * 119.99908 * 180.02562 * 20 19 18 22 22 O 1.21305 * 120.00137 * 0.02562 * 20 19 18 23 23 N 1.34606 * 108.16437 * 0.02562 * 19 18 17 24 24 N 1.28714 * 109.55129 * 359.97438 * 23 19 18 25 25 H 1.09000 * 109.47322 * 59.99950 * 1 2 3 26 26 H 1.09000 * 109.47159 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46918 * 299.99547 * 1 2 3 28 28 H 1.09002 * 109.46606 * 240.00010 * 2 1 3 29 29 H 1.08997 * 109.46900 * 120.00670 * 2 1 3 30 30 H 0.97005 * 119.99675 * 180.02562 * 8 7 5 31 31 H 1.09002 * 109.47041 * 60.00463 * 16 14 13 32 32 H 1.08993 * 109.47217 * 300.00287 * 16 14 13 33 33 H 1.07996 * 126.67654 * 0.04530 * 18 17 16 34 34 H 1.09002 * 109.46923 * 59.99738 * 21 20 19 35 35 H 1.09002 * 109.47407 * 179.97438 * 21 20 19 36 36 H 1.08996 * 109.47389 * 300.00227 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9814 0.8419 5 6 3.5420 1.4442 0.1238 6 1 4.1472 1.8888 -0.6523 7 6 4.1433 0.8782 1.2279 8 7 3.4062 0.3372 2.1733 9 14 6.0050 0.8809 1.3817 10 1 6.4996 2.2811 1.3821 11 1 6.3978 0.2163 2.6502 12 1 6.5975 0.1470 0.2347 13 8 1.6559 2.0917 -1.2406 14 6 0.4727 2.7255 -1.2558 15 8 -0.2188 2.7377 -0.2652 16 6 0.0070 3.4218 -2.5086 17 7 -1.3030 4.0325 -2.2695 18 6 -1.6302 5.3261 -2.4545 19 6 -2.9593 5.4516 -2.1053 20 6 -3.7476 6.6888 -2.1483 21 6 -5.1965 6.6738 -1.7344 22 8 -3.2328 7.7235 -2.5170 23 7 -3.4075 4.2427 -1.7185 24 7 -2.4540 3.3823 -1.8038 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 3.8293 -0.0606 2.9502 31 1 -0.0719 2.6972 -3.3190 32 1 0.7240 4.1959 -2.7819 33 1 -0.9791 6.1120 -2.8077 34 1 -5.2747 6.3476 -0.6973 35 1 -5.6127 7.6765 -1.8319 36 1 -5.7501 5.9865 -2.3741 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001122989656.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:10 Heat of formation + Delta-G solvation = -29.831602 kcal Electronic energy + Delta-G solvation = -21646.282062 eV Core-core repulsion = 18133.373730 eV Total energy + Delta-G solvation = -3512.908332 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.23894 -39.88342 -39.10786 -36.23926 -34.63544 -33.65989 -31.49042 -31.45019 -30.22510 -28.66029 -27.23117 -23.67306 -23.55774 -22.67067 -21.27990 -20.08093 -19.51827 -17.59311 -17.52623 -16.73517 -16.28166 -15.77564 -15.60903 -15.40368 -15.28620 -14.69534 -14.51759 -14.28157 -13.50834 -13.02356 -12.92607 -12.53776 -12.32222 -12.16936 -12.06417 -11.61033 -11.49565 -11.33845 -11.31539 -11.04501 -10.81483 -10.73700 -10.40171 -10.13610 -9.93099 -9.79214 -9.52558 -9.35037 -8.95991 -8.56417 -6.28692 -4.37382 0.83639 1.38321 1.77618 2.59943 2.83683 3.15909 3.19313 3.24229 3.29905 3.74401 4.15929 4.22012 4.38998 4.60158 4.79654 4.93583 5.03100 5.14620 5.27552 5.30304 5.34904 5.57904 5.91108 6.11232 6.16607 6.22742 6.36398 6.72712 6.86319 7.05413 7.09663 7.21544 7.48663 7.60943 7.77337 7.92573 8.01817 8.35719 8.71223 9.28215 10.77782 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.032771 B = 0.003516 C = 0.003366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.215615 B = 7962.000744 C = 8316.623161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.137 4.137 3 C 0.225 3.775 4 H 0.048 0.952 5 C -0.527 4.527 6 H 0.069 0.931 7 C 0.064 3.936 8 N -0.886 5.886 9 Si 0.913 3.087 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.273 1.273 13 O -0.350 6.350 14 C 0.438 3.562 15 O -0.486 6.486 16 C 0.124 3.876 17 N -0.347 5.347 18 C 0.096 3.904 19 C -0.144 4.144 20 C 0.447 3.553 21 C -0.188 4.188 22 O -0.466 6.466 23 N -0.197 5.197 24 N -0.027 5.027 25 H 0.032 0.968 26 H 0.034 0.966 27 H 0.053 0.947 28 H 0.043 0.957 29 H 0.110 0.890 30 H 0.268 0.732 31 H 0.138 0.862 32 H 0.143 0.857 33 H 0.205 0.795 34 H 0.097 0.903 35 H 0.083 0.917 36 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.618 8.074 -10.253 16.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.174 4.174 3 C 0.173 3.827 4 H 0.066 0.934 5 C -0.565 4.565 6 H 0.087 0.913 7 C -0.139 4.139 8 N -0.523 5.523 9 Si 0.740 3.260 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.199 1.199 13 O -0.266 6.266 14 C 0.278 3.722 15 O -0.373 6.373 16 C 0.001 3.999 17 N -0.131 5.131 18 C -0.061 4.061 19 C -0.280 4.280 20 C 0.324 3.676 21 C -0.245 4.245 22 O -0.339 6.339 23 N -0.072 5.072 24 N -0.008 5.008 25 H 0.051 0.949 26 H 0.054 0.946 27 H 0.072 0.928 28 H 0.062 0.938 29 H 0.128 0.872 30 H 0.078 0.922 31 H 0.155 0.845 32 H 0.161 0.839 33 H 0.222 0.778 34 H 0.115 0.885 35 H 0.102 0.898 36 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -10.030 7.141 -9.476 15.537 hybrid contribution 1.542 0.598 -0.025 1.654 sum -8.488 7.739 -9.501 14.906 Atomic orbital electron populations 1.21850 0.98042 0.99247 1.00814 1.22042 0.92804 0.99063 1.03534 1.20791 0.95120 0.88826 0.77940 0.93395 1.20971 0.89375 1.39635 1.06490 0.91273 1.24893 0.99388 0.94599 0.94979 1.69879 1.35625 1.37376 1.09411 0.86309 0.83584 0.78528 0.77588 1.19956 1.20957 1.19867 1.86460 1.32888 1.62252 1.44998 1.22723 0.82129 0.78528 0.88846 1.90739 1.54801 1.57071 1.34729 1.21432 0.79918 1.01143 0.97419 1.50004 1.11405 1.07323 1.44348 1.23929 0.97223 0.87307 0.97630 1.22371 0.93913 0.96009 1.15737 1.21284 0.89862 0.84167 0.72297 1.22101 0.93267 1.04611 1.04488 1.90574 1.73693 1.32597 1.37068 1.74707 1.22283 0.99283 1.10950 1.82190 0.86241 1.16345 1.16054 0.94915 0.94649 0.92838 0.93829 0.87197 0.92159 0.84473 0.83915 0.77792 0.88455 0.89764 0.88536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.05 8.57 37.16 0.32 -2.73 16 2 C -0.14 -3.25 5.49 -26.73 -0.15 -3.39 16 3 C 0.23 5.64 2.25 -27.88 -0.06 5.58 16 4 H 0.05 1.35 7.16 -51.93 -0.37 0.98 16 5 C -0.53 -14.00 8.90 -34.44 -0.31 -14.31 16 6 H 0.07 1.79 7.81 -52.49 -0.41 1.38 16 7 C 0.06 1.70 5.29 -17.82 -0.09 1.60 16 8 N -0.89 -24.29 11.30 55.43 0.63 -23.66 16 9 Si 0.91 20.28 29.54 -169.99 -5.02 15.26 16 10 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 11 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 12 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 13 O -0.35 -7.39 9.81 -39.26 -0.39 -7.78 16 14 C 0.44 7.98 6.45 36.01 0.23 8.21 16 15 O -0.49 -10.59 12.87 -18.75 -0.24 -10.83 16 16 C 0.12 1.42 7.13 -5.19 -0.04 1.39 16 17 N -0.35 -4.59 3.40 -61.89 -0.21 -4.80 16 18 C 0.10 1.08 11.34 -16.38 -0.19 0.89 16 19 C -0.14 -1.83 6.96 -83.29 -0.58 -2.41 16 20 C 0.45 5.04 7.24 -30.86 -0.22 4.81 16 21 C -0.19 -1.53 10.09 36.01 0.36 -1.16 16 22 O -0.47 -6.16 17.61 5.54 0.10 -6.06 16 23 N -0.20 -2.94 12.21 32.97 0.40 -2.54 16 24 N -0.03 -0.44 12.86 60.35 0.78 0.33 16 25 H 0.03 0.67 6.06 -51.93 -0.31 0.35 16 26 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.05 1.22 7.80 -51.93 -0.40 0.82 16 28 H 0.04 1.00 8.14 -51.93 -0.42 0.57 16 29 H 0.11 2.87 5.95 -51.93 -0.31 2.56 16 30 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 31 H 0.14 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.14 1.05 8.08 -51.93 -0.42 0.63 16 33 H 0.21 1.48 8.06 -52.49 -0.42 1.06 16 34 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.08 0.58 8.12 -51.93 -0.42 0.16 16 36 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 318.65 15.07 4.80 4.80 Total: -1.00 -32.84 318.65 -4.20 -37.04 By element: Atomic # 1 Polarization: 4.08 SS G_CDS: -4.32 Total: -0.25 kcal Atomic # 6 Polarization: -0.80 SS G_CDS: -0.72 Total: -1.52 kcal Atomic # 7 Polarization: -32.27 SS G_CDS: 1.59 Total: -30.67 kcal Atomic # 8 Polarization: -24.14 SS G_CDS: -0.53 Total: -24.67 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -32.84 -4.20 -37.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001122989656.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.209 kcal (2) G-P(sol) polarization free energy of solvation -32.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds