Wall clock time and date at job start Tue Mar 31 2020 06:22:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 109.47010 * 2 1 4 4 C 1.53003 * 109.46979 * 119.99834 * 2 1 3 5 5 C 1.52998 * 109.47252 * 296.68249 * 4 2 1 6 6 C 1.50694 * 109.47084 * 185.18111 * 5 4 2 7 7 H 1.08007 * 120.00048 * 359.97438 * 6 5 4 8 8 C 1.37875 * 120.00353 * 180.02562 * 6 5 4 9 9 N 1.31521 * 119.99521 * 359.97438 * 8 6 5 10 10 Si 1.86796 * 120.00482 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47419 * 89.99416 * 10 8 6 12 12 H 1.48496 * 109.47296 * 209.99732 * 10 8 6 13 13 H 1.48498 * 109.47079 * 329.99656 * 10 8 6 14 14 N 1.46894 * 109.46957 * 240.00067 * 2 1 3 15 15 C 1.46466 * 111.00377 * 64.98105 * 14 2 1 16 16 C 1.53328 * 111.28589 * 189.58508 * 15 14 2 17 17 C 1.53144 * 108.03319 * 296.80554 * 16 15 14 18 18 H 1.09001 * 111.49726 * 292.46981 * 17 16 15 19 19 S 1.81386 * 111.23088 * 167.98256 * 17 16 15 20 20 C 1.77315 * 94.81782 * 240.81947 * 19 17 16 21 21 O 1.21661 * 126.70531 * 182.54467 * 20 19 17 22 22 C 1.46240 * 106.59344 * 2.56786 * 20 19 17 23 23 C 1.30404 * 118.68416 * 0.07926 * 22 20 19 24 24 C 1.47496 * 110.99828 * 190.68858 * 14 2 1 25 25 H 1.09000 * 109.47338 * 60.00027 * 1 2 3 26 26 H 1.08995 * 109.47513 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47441 * 300.00083 * 1 2 3 28 28 H 1.09005 * 109.46849 * 56.68673 * 4 2 1 29 29 H 1.09001 * 109.46985 * 176.67991 * 4 2 1 30 30 H 1.08998 * 109.47155 * 305.18124 * 5 4 2 31 31 H 1.08999 * 109.47031 * 65.17699 * 5 4 2 32 32 H 0.97007 * 119.99885 * 180.02562 * 9 8 6 33 33 H 1.09002 * 109.11388 * 69.12032 * 15 14 2 34 34 H 1.08993 * 109.11347 * 310.05264 * 15 14 2 35 35 H 1.08995 * 109.74740 * 177.16376 * 16 15 14 36 36 H 1.09000 * 109.78754 * 56.46127 * 16 15 14 37 37 H 1.08002 * 120.65302 * 180.02562 * 22 20 19 38 38 H 1.08994 * 110.08470 * 61.68900 * 24 14 2 39 39 H 1.09003 * 110.08712 * 300.06860 * 24 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.5992 0.0466 2.4971 6 6 2.2070 -0.5908 3.7199 7 1 2.8436 -1.4573 3.6173 8 6 1.9496 -0.0687 4.9697 9 7 1.1740 0.9861 5.0946 10 14 2.7035 -0.8584 6.4854 11 1 4.0197 -0.2314 6.7675 12 1 1.8012 -0.6595 7.6479 13 1 2.8889 -2.3121 6.2457 14 7 2.0196 -0.6925 -1.1994 15 6 1.6493 0.0367 -2.4145 16 6 1.9451 -0.7898 -3.6716 17 6 3.4572 -1.0219 -3.7415 18 1 3.9958 -0.0926 -3.9271 19 16 3.8727 -2.2738 -4.9865 20 6 4.6227 -3.3901 -3.8308 21 8 5.1579 -4.4519 -4.0880 22 6 4.4718 -2.7852 -2.5079 23 6 3.8658 -1.6346 -2.4112 24 6 3.4715 -0.9373 -1.1127 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.6289 -1.7303 1.2795 29 1 3.1283 -0.7731 1.2200 30 1 1.9325 1.0818 2.4233 31 1 0.5124 0.0196 2.5754 32 1 0.9932 1.3538 5.9739 33 1 2.2146 0.9677 -2.4582 34 1 0.5847 0.2680 -2.3815 35 1 1.6146 -0.2457 -4.5563 36 1 1.4278 -1.7475 -3.6137 37 1 4.8540 -3.2820 -1.6284 38 1 3.6925 -1.5800 -0.2606 39 1 4.0056 0.0082 -1.0184 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172497028.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:02 Heat of formation + Delta-G solvation = -20.406493 kcal Electronic energy + Delta-G solvation = -19761.000471 eV Core-core repulsion = 16794.794057 eV Total energy + Delta-G solvation = -2966.206414 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 1.92 seconds Orbital eigenvalues (eV) -39.97805 -38.89973 -36.48534 -33.89834 -32.71829 -31.34044 -29.38224 -27.51392 -25.67611 -24.89908 -23.01501 -22.43873 -20.98478 -19.34855 -19.27565 -17.76647 -16.63427 -16.26148 -15.59552 -15.53825 -15.09901 -14.68780 -14.46489 -14.43806 -13.97439 -13.80239 -13.40709 -13.21588 -12.72578 -12.42170 -12.07725 -11.88163 -11.59722 -11.49296 -11.21483 -11.06195 -10.84811 -10.74239 -10.57313 -10.29618 -9.87112 -9.84647 -9.73345 -9.40205 -9.09217 -8.78635 -8.39116 -8.27489 -6.05201 -4.07444 0.44623 1.02624 1.54767 2.32366 3.28468 3.35432 3.38530 3.65000 3.82995 4.05830 4.37103 4.42204 4.62822 4.89496 4.95018 5.10909 5.22075 5.24092 5.31098 5.41533 5.44953 5.54462 5.65483 5.71612 5.79145 5.80589 5.98492 6.19494 6.23922 6.49239 6.56724 6.63615 6.74926 6.94120 7.12979 7.20309 7.61150 7.75359 7.94219 8.37129 8.99545 9.57086 11.06013 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.025259 B = 0.003678 C = 0.003286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.255996 B = 7611.478716 C = 8517.906399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.084 3.916 3 H 0.041 0.959 4 C -0.109 4.109 5 C 0.023 3.977 6 C -0.521 4.521 7 H 0.054 0.946 8 C 0.058 3.942 9 N -0.895 5.895 10 Si 0.890 3.110 11 H -0.281 1.281 12 H -0.286 1.286 13 H -0.274 1.274 14 N -0.538 5.538 15 C 0.052 3.948 16 C -0.093 4.093 17 C -0.049 4.049 18 H 0.134 0.866 19 S -0.209 6.209 20 C 0.421 3.579 21 O -0.412 6.412 22 C -0.239 4.239 23 C -0.020 4.020 24 C 0.100 3.900 25 H 0.043 0.957 26 H 0.060 0.940 27 H 0.072 0.928 28 H 0.057 0.943 29 H 0.050 0.950 30 H 0.013 0.987 31 H 0.021 0.979 32 H 0.260 0.740 33 H 0.036 0.964 34 H 0.091 0.909 35 H 0.084 0.916 36 H 0.088 0.912 37 H 0.159 0.841 38 H 0.111 0.889 39 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.305 -0.717 -17.823 17.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.022 4.022 3 H 0.059 0.941 4 C -0.146 4.146 5 C -0.014 4.014 6 C -0.559 4.559 7 H 0.073 0.927 8 C -0.144 4.144 9 N -0.535 5.535 10 Si 0.718 3.282 11 H -0.207 1.207 12 H -0.212 1.212 13 H -0.198 1.198 14 N -0.264 5.264 15 C -0.078 4.078 16 C -0.132 4.132 17 C -0.178 4.178 18 H 0.151 0.849 19 S 0.027 5.973 20 C 0.190 3.810 21 O -0.289 6.289 22 C -0.266 4.266 23 C -0.025 4.025 24 C -0.028 4.028 25 H 0.062 0.938 26 H 0.079 0.921 27 H 0.091 0.909 28 H 0.076 0.924 29 H 0.069 0.931 30 H 0.031 0.969 31 H 0.039 0.961 32 H 0.070 0.930 33 H 0.054 0.946 34 H 0.110 0.890 35 H 0.103 0.897 36 H 0.107 0.893 37 H 0.177 0.823 38 H 0.129 0.871 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.098 -1.674 -19.193 19.380 hybrid contribution 1.058 0.493 2.127 2.426 sum 3.156 -1.182 -17.066 17.395 Atomic orbital electron populations 1.21886 0.94183 1.02397 1.01415 1.21830 0.95967 0.95578 0.88843 0.94101 1.21846 0.99435 0.99794 0.93575 1.19117 0.96931 0.95016 0.90350 1.21238 1.29701 1.13526 0.91463 0.92748 1.25006 0.95218 0.95026 0.99103 1.69959 1.37216 1.22696 1.23595 0.86620 0.79061 0.79807 0.82694 1.20703 1.21215 1.19846 1.61776 1.11428 1.50369 1.02780 1.22108 1.02307 0.94408 0.88993 1.21786 0.90233 1.02809 0.98410 1.23410 1.02400 1.00150 0.91826 0.84875 1.87216 1.70632 1.20785 1.18625 1.24345 0.78724 0.88206 0.89737 1.90700 1.37550 1.20432 1.80255 1.22539 1.06682 0.98406 0.98947 1.22736 0.90067 0.93665 0.95999 1.21657 0.88937 0.99698 0.92495 0.93757 0.92065 0.90867 0.92383 0.93131 0.96864 0.96087 0.92997 0.94584 0.89037 0.89727 0.89333 0.82343 0.87127 0.91888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 8.83 37.16 0.33 -1.68 16 2 C 0.08 1.25 2.20 -67.72 -0.15 1.10 16 3 H 0.04 0.62 8.13 -51.93 -0.42 0.20 16 4 C -0.11 -2.00 4.17 -26.73 -0.11 -2.11 16 5 C 0.02 0.56 4.55 -27.89 -0.13 0.43 16 6 C -0.52 -14.10 9.11 -34.44 -0.31 -14.41 16 7 H 0.05 1.44 7.74 -52.48 -0.41 1.03 16 8 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 9 N -0.90 -26.05 13.29 55.43 0.74 -25.32 16 10 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 11 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 12 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 13 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 14 N -0.54 -6.54 4.47 -226.57 -1.01 -7.55 16 15 C 0.05 0.49 5.16 -3.89 -0.02 0.47 16 16 C -0.09 -0.79 5.59 -26.49 -0.15 -0.93 16 17 C -0.05 -0.44 3.59 -27.14 -0.10 -0.54 16 18 H 0.13 0.98 8.14 -51.93 -0.42 0.56 16 19 S -0.21 -2.29 22.79 -107.50 -2.45 -4.74 16 20 C 0.42 5.35 8.10 33.94 0.28 5.62 16 21 O -0.41 -6.35 18.05 5.22 0.09 -6.25 16 22 C -0.24 -2.62 10.00 -37.92 -0.38 -3.00 16 23 C -0.02 -0.21 5.46 -99.30 -0.54 -0.75 16 24 C 0.10 1.12 5.17 -3.71 -0.02 1.10 16 25 H 0.04 0.52 6.32 -51.93 -0.33 0.19 16 26 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 27 H 0.07 1.18 6.63 -51.93 -0.34 0.84 16 28 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.05 0.90 6.14 -51.93 -0.32 0.58 16 30 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.02 0.53 6.78 -51.93 -0.35 0.18 16 32 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 33 H 0.04 0.33 8.14 -51.93 -0.42 -0.10 16 34 H 0.09 0.85 5.99 -51.93 -0.31 0.54 16 35 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.16 1.59 8.06 -52.49 -0.42 1.17 16 38 H 0.11 1.33 6.26 -51.93 -0.33 1.00 16 39 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 LS Contribution 322.36 15.07 4.86 4.86 Total: -1.00 -29.77 322.36 -9.95 -39.72 By element: Atomic # 1 Polarization: 2.15 SS G_CDS: -5.75 Total: -3.60 kcal Atomic # 6 Polarization: -11.79 SS G_CDS: -1.40 Total: -13.19 kcal Atomic # 7 Polarization: -32.59 SS G_CDS: -0.28 Total: -32.87 kcal Atomic # 8 Polarization: -6.35 SS G_CDS: 0.09 Total: -6.25 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 16 Polarization: -2.29 SS G_CDS: -2.45 Total: -4.74 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -29.77 -9.95 -39.72 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172497028.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.309 kcal (2) G-P(sol) polarization free energy of solvation -29.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.92 seconds